Wall clock time and date at job start Tue Mar 31 2020 16:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.46790 * 2 1 4 4 N 1.46502 * 109.47187 * 120.00377 * 2 1 3 5 5 C 1.46500 * 119.99852 * 304.69842 * 4 2 1 6 6 C 1.53006 * 109.46810 * 270.00129 * 5 4 2 7 7 N 1.46504 * 109.46790 * 180.02562 * 6 5 4 8 8 C 1.46504 * 119.99664 * 269.99730 * 7 6 5 9 9 C 1.36931 * 120.00521 * 90.00100 * 7 6 5 10 10 H 1.08002 * 119.99669 * 356.17805 * 9 7 6 11 11 C 1.38810 * 120.00430 * 176.18121 * 9 7 6 12 12 N 1.31618 * 120.00008 * 34.41611 * 11 9 7 13 13 Si 1.86804 * 120.00081 * 214.42078 * 11 9 7 14 14 H 1.48493 * 109.47248 * 94.99595 * 13 11 9 15 15 H 1.48500 * 109.46970 * 214.99819 * 13 11 9 16 16 H 1.48502 * 109.47044 * 334.99468 * 13 11 9 17 17 C 1.34774 * 119.99876 * 124.69781 * 4 2 1 18 18 O 1.21273 * 120.00327 * 4.91233 * 17 4 2 19 19 C 1.50707 * 119.99745 * 184.63464 * 17 4 2 20 20 H 1.09001 * 110.28189 * 332.37685 * 19 17 4 21 21 C 1.54160 * 110.31704 * 210.26006 * 19 17 4 22 22 C 1.53883 * 108.70089 * 213.18937 * 21 19 17 23 23 C 1.55040 * 106.62547 * 47.18173 * 22 21 19 24 24 S 1.82918 * 110.31603 * 94.59781 * 19 17 4 25 25 O 1.42107 * 109.35193 * 234.42358 * 24 19 17 26 26 O 1.42095 * 109.35679 * 7.62480 * 24 19 17 27 27 H 1.09000 * 109.47328 * 299.99044 * 1 2 3 28 28 H 1.08994 * 109.47510 * 59.99676 * 1 2 3 29 29 H 1.09006 * 109.47283 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47115 * 240.00201 * 2 1 3 31 31 H 1.08995 * 109.47062 * 179.97438 * 3 2 1 32 32 H 1.08993 * 109.47841 * 300.00198 * 3 2 1 33 33 H 1.09001 * 109.46852 * 60.00673 * 3 2 1 34 34 H 1.09000 * 109.47598 * 29.99951 * 5 4 2 35 35 H 1.09000 * 109.47147 * 150.00596 * 5 4 2 36 36 H 1.09000 * 109.47084 * 299.99490 * 6 5 4 37 37 H 1.08996 * 109.47549 * 60.00075 * 6 5 4 38 38 H 1.08994 * 109.47271 * 95.83258 * 8 7 6 39 39 H 1.09004 * 109.46872 * 215.83486 * 8 7 6 40 40 H 1.09005 * 109.47157 * 335.83305 * 8 7 6 41 41 H 0.96996 * 120.00287 * 180.02562 * 12 11 9 42 42 H 1.09000 * 109.64986 * 333.03785 * 21 19 17 43 43 H 1.09000 * 109.64619 * 93.47281 * 21 19 17 44 44 H 1.09005 * 110.02118 * 166.47102 * 22 21 19 45 45 H 1.09004 * 110.02668 * 287.83737 * 22 21 19 46 46 H 1.09009 * 110.79057 * 75.83410 * 23 22 21 47 47 H 1.08994 * 110.79268 * 199.10502 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.5816 -0.2531 2.5243 6 6 2.5477 0.8081 3.0548 7 7 2.1113 1.2453 4.3833 8 6 1.1861 2.3734 4.5158 9 6 2.5682 0.5996 5.5010 10 1 3.2008 -0.2700 5.4016 11 6 2.2181 1.0626 6.7619 12 7 1.0317 1.5967 6.9609 13 14 3.4309 0.9279 8.1764 14 1 4.1833 2.2015 8.3063 15 1 2.6934 0.6579 9.4367 16 1 4.3799 -0.1829 7.9105 17 6 2.8694 -1.7287 1.0746 18 8 3.3008 -2.0346 -0.0167 19 6 3.2899 -2.5052 2.2959 20 1 3.2478 -1.8699 3.1806 21 6 4.7127 -3.0684 2.1084 22 6 4.8090 -4.4190 2.8395 23 6 3.5518 -5.2321 2.4367 24 16 2.2214 -3.9737 2.5138 25 8 1.6620 -3.9594 3.8200 26 8 1.3753 -4.1128 1.3807 27 1 -0.3634 0.5137 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1299 1.4425 0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6766 1.9562 0.8901 34 1 0.5793 0.1697 2.4562 35 1 1.5708 -1.1062 3.2026 36 1 3.5501 0.3853 3.1230 37 1 2.5586 1.6613 2.3766 38 1 0.1664 1.9986 4.6042 39 1 1.4401 2.9490 5.4059 40 1 1.2634 3.0121 3.6358 41 1 0.7872 1.9206 7.8419 42 1 4.9133 -3.2114 1.0466 43 1 5.4401 -2.3738 2.5286 44 1 5.7105 -4.9476 2.5297 45 1 4.8218 -4.2597 3.9178 46 1 3.6535 -5.6261 1.4254 47 1 3.3680 -6.0377 3.1474 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278929968.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:58 Heat of formation + Delta-G solvation = -69.462481 kcal Electronic energy + Delta-G solvation = -29127.068638 eV Core-core repulsion = 25245.784125 eV Total energy + Delta-G solvation = -3881.284512 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.22650 -37.18913 -37.06286 -36.18294 -35.90868 -35.28864 -32.77655 -31.38680 -30.05158 -28.20051 -27.18531 -26.01007 -25.88278 -23.67219 -22.37229 -21.22649 -20.65320 -19.24847 -18.49524 -17.72838 -17.09870 -16.77300 -16.67611 -16.01159 -15.30217 -15.11106 -14.68067 -14.36387 -14.18219 -14.03309 -13.92707 -13.59690 -13.37823 -13.04626 -12.88722 -12.76995 -12.55551 -12.18347 -12.16625 -12.11129 -12.05706 -11.96510 -11.89585 -11.59998 -11.25496 -11.12750 -11.06053 -10.92293 -10.78424 -10.67164 -10.50423 -10.41250 -10.28928 -10.05804 -9.85359 -9.72944 -8.72360 -8.27007 -7.06881 -5.94810 -3.08551 -0.16340 2.30477 2.70664 2.92529 3.37683 3.47063 3.47876 3.49110 3.88985 4.16202 4.26226 4.45857 4.50968 4.54694 4.80601 4.94663 5.08500 5.16010 5.21210 5.25211 5.30139 5.34718 5.38532 5.56009 5.60281 5.66678 5.70537 5.72943 5.82339 5.88399 5.90449 5.98607 6.09812 6.17733 6.31058 6.37811 6.60292 6.63761 6.79399 7.31268 7.44515 7.56139 7.78130 8.14350 8.20719 9.09692 9.78282 10.22430 11.15118 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.010224 B = 0.005468 C = 0.004119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2738.053691 B = 5119.828464 C = 6796.104933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.134 3.866 3 C -0.164 4.164 4 N -0.594 5.594 5 C 0.065 3.935 6 C 0.137 3.863 7 N -0.600 5.600 8 C 0.150 3.850 9 C -0.273 4.273 10 H 0.078 0.922 11 C 0.014 3.986 12 N -0.883 5.883 13 Si 0.879 3.121 14 H -0.288 1.288 15 H -0.293 1.293 16 H -0.278 1.278 17 C 0.549 3.451 18 O -0.533 6.533 19 C -0.598 4.598 20 H 0.172 0.828 21 C -0.102 4.102 22 C -0.120 4.120 23 C -0.587 4.587 24 S 2.392 3.608 25 O -0.915 6.915 26 O -0.925 6.925 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.099 0.901 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.048 0.952 37 H 0.054 0.946 38 H 0.015 0.985 39 H 0.066 0.934 40 H 0.002 0.998 41 H 0.255 0.745 42 H 0.101 0.899 43 H 0.098 0.902 44 H 0.101 0.899 45 H 0.091 0.909 46 H 0.140 0.860 47 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.892 -7.951 -12.213 15.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.031 3.969 3 C -0.222 4.222 4 N -0.326 5.326 5 C -0.060 4.060 6 C 0.008 3.992 7 N -0.323 5.323 8 C 0.005 3.995 9 C -0.400 4.400 10 H 0.096 0.904 11 C -0.185 4.185 12 N -0.526 5.526 13 Si 0.708 3.292 14 H -0.215 1.215 15 H -0.220 1.220 16 H -0.204 1.204 17 C 0.334 3.666 18 O -0.410 6.410 19 C -0.707 4.707 20 H 0.189 0.811 21 C -0.140 4.140 22 C -0.158 4.158 23 C -0.717 4.717 24 S 2.572 3.428 25 O -0.912 6.912 26 O -0.922 6.922 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.117 0.883 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.103 0.897 35 H 0.091 0.909 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.033 0.967 39 H 0.084 0.916 40 H 0.020 0.980 41 H 0.065 0.935 42 H 0.119 0.881 43 H 0.116 0.884 44 H 0.119 0.881 45 H 0.110 0.890 46 H 0.158 0.842 47 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 4.021 -8.067 -12.500 15.411 hybrid contribution 1.228 0.028 1.069 1.628 sum 5.249 -8.040 -11.431 14.928 Atomic orbital electron populations 1.22190 0.94761 1.02788 1.02651 1.21071 0.94221 0.93258 0.88347 1.22284 1.01705 0.95591 1.02605 1.48134 1.45282 1.30869 1.08360 1.23046 1.01699 1.00602 0.80675 1.21311 0.95553 0.95065 0.87254 1.44136 1.53037 1.34813 1.00282 1.21085 0.92424 0.88474 0.97470 1.19145 1.25725 1.11115 0.84034 0.90429 1.24683 0.96191 1.00519 0.97157 1.70332 1.16233 1.43769 1.22238 0.86606 0.82460 0.77839 0.82328 1.21522 1.21999 1.20355 1.18893 0.79027 0.80550 0.88085 1.90638 1.55038 1.68211 1.27135 1.30748 1.13520 1.18849 1.07609 0.81076 1.21956 0.92063 0.95854 1.04159 1.22244 0.97514 0.93850 1.02210 1.30644 1.15318 1.14410 1.11369 1.09337 0.78112 0.79561 0.75815 1.93696 1.74685 1.84949 1.37841 1.93621 1.62522 1.84326 1.51699 0.91666 0.91358 0.91972 0.88288 0.92240 0.91734 0.91280 0.89724 0.90915 0.93399 0.92825 0.96665 0.91569 0.97988 0.93497 0.88070 0.88392 0.88053 0.89044 0.84207 0.84259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.06 9.08 37.16 0.34 -1.73 16 2 C 0.13 1.83 3.24 -67.93 -0.22 1.61 16 3 C -0.16 -1.98 8.43 37.15 0.31 -1.67 16 4 N -0.59 -9.31 2.40 -166.11 -0.40 -9.71 16 5 C 0.06 1.13 4.89 -4.04 -0.02 1.11 16 6 C 0.14 2.57 5.65 -4.04 -0.02 2.55 16 7 N -0.60 -14.05 2.93 -181.11 -0.53 -14.58 16 8 C 0.15 3.49 9.24 59.85 0.55 4.04 16 9 C -0.27 -7.11 9.64 -15.06 -0.15 -7.26 16 10 H 0.08 1.96 8.02 -52.49 -0.42 1.54 16 11 C 0.01 0.38 4.85 -17.43 -0.08 0.29 16 12 N -0.88 -24.83 10.80 55.49 0.60 -24.23 16 13 Si 0.88 20.99 29.67 -169.99 -5.04 15.95 16 14 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 15 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 16 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 17 C 0.55 8.80 6.19 -10.98 -0.07 8.73 16 18 O -0.53 -9.28 15.07 5.56 0.08 -9.20 16 19 C -0.60 -8.26 2.74 -27.27 -0.07 -8.33 16 20 H 0.17 2.46 5.87 -51.93 -0.30 2.15 16 21 C -0.10 -1.06 5.90 -25.66 -0.15 -1.21 16 22 C -0.12 -0.98 6.48 -25.19 -0.16 -1.14 16 23 C -0.59 -5.27 7.31 38.24 0.28 -4.99 16 24 S 2.39 33.73 5.95 -107.50 -0.64 33.09 16 25 O -0.91 -16.02 18.15 -57.71 -1.05 -17.06 16 26 O -0.92 -15.73 17.28 -57.71 -1.00 -16.72 16 27 H 0.06 0.83 6.53 -51.93 -0.34 0.50 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.10 1.41 6.94 -51.93 -0.36 1.05 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.89 6.01 -51.93 -0.31 0.58 16 34 H 0.08 1.47 6.19 -51.93 -0.32 1.15 16 35 H 0.07 1.35 6.27 -51.93 -0.33 1.02 16 36 H 0.05 0.88 7.66 -51.93 -0.40 0.49 16 37 H 0.05 0.92 5.13 -51.93 -0.27 0.66 16 38 H 0.02 0.37 8.04 -51.93 -0.42 -0.04 16 39 H 0.07 1.70 6.19 -51.93 -0.32 1.38 16 40 H 0.00 0.03 7.83 -51.93 -0.41 -0.38 16 41 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 42 H 0.10 1.07 6.88 -51.93 -0.36 0.72 16 43 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 44 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.14 1.04 8.14 -51.92 -0.42 0.62 16 47 H 0.14 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 376.33 15.07 5.67 5.67 Total: -1.00 -34.11 376.33 -9.26 -43.37 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -7.49 Total: 1.44 kcal Atomic # 6 Polarization: -8.54 SS G_CDS: 0.53 Total: -8.01 kcal Atomic # 7 Polarization: -48.20 SS G_CDS: -0.33 Total: -48.53 kcal Atomic # 8 Polarization: -41.02 SS G_CDS: -1.96 Total: -42.99 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.04 Total: 15.95 kcal Atomic # 16 Polarization: 33.73 SS G_CDS: -0.64 Total: 33.09 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.11 -9.26 -43.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278929968.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.095 kcal (2) G-P(sol) polarization free energy of solvation -34.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds