Wall clock time and date at job start Tue Mar 31 2020 16:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.46790 * 2 1 4 4 N 1.46502 * 109.47187 * 120.00377 * 2 1 3 5 5 C 1.46500 * 119.99852 * 304.69842 * 4 2 1 6 6 C 1.53006 * 109.46810 * 270.00129 * 5 4 2 7 7 N 1.46504 * 109.46790 * 180.02562 * 6 5 4 8 8 C 1.46504 * 119.99664 * 269.99730 * 7 6 5 9 9 C 1.36931 * 120.00521 * 90.00100 * 7 6 5 10 10 H 1.08002 * 119.99669 * 356.17805 * 9 7 6 11 11 C 1.38810 * 120.00430 * 176.18121 * 9 7 6 12 12 N 1.31618 * 120.00008 * 34.41611 * 11 9 7 13 13 Si 1.86804 * 120.00081 * 214.42078 * 11 9 7 14 14 H 1.48493 * 109.47248 * 94.99595 * 13 11 9 15 15 H 1.48500 * 109.46970 * 214.99819 * 13 11 9 16 16 H 1.48502 * 109.47044 * 334.99468 * 13 11 9 17 17 C 1.34774 * 119.99876 * 124.69781 * 4 2 1 18 18 O 1.21273 * 120.00327 * 4.91233 * 17 4 2 19 19 C 1.50707 * 119.99745 * 184.63464 * 17 4 2 20 20 H 1.09001 * 110.28189 * 332.37685 * 19 17 4 21 21 C 1.54160 * 110.31704 * 210.26006 * 19 17 4 22 22 C 1.53883 * 108.70089 * 213.18937 * 21 19 17 23 23 C 1.55040 * 106.62547 * 47.18173 * 22 21 19 24 24 S 1.82918 * 110.31603 * 94.59781 * 19 17 4 25 25 O 1.42107 * 109.35193 * 234.42358 * 24 19 17 26 26 O 1.42095 * 109.35679 * 7.62480 * 24 19 17 27 27 H 1.09000 * 109.47328 * 299.99044 * 1 2 3 28 28 H 1.08994 * 109.47510 * 59.99676 * 1 2 3 29 29 H 1.09006 * 109.47283 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47115 * 240.00201 * 2 1 3 31 31 H 1.08995 * 109.47062 * 179.97438 * 3 2 1 32 32 H 1.08993 * 109.47841 * 300.00198 * 3 2 1 33 33 H 1.09001 * 109.46852 * 60.00673 * 3 2 1 34 34 H 1.09000 * 109.47598 * 29.99951 * 5 4 2 35 35 H 1.09000 * 109.47147 * 150.00596 * 5 4 2 36 36 H 1.09000 * 109.47084 * 299.99490 * 6 5 4 37 37 H 1.08996 * 109.47549 * 60.00075 * 6 5 4 38 38 H 1.08994 * 109.47271 * 95.83258 * 8 7 6 39 39 H 1.09004 * 109.46872 * 215.83486 * 8 7 6 40 40 H 1.09005 * 109.47157 * 335.83305 * 8 7 6 41 41 H 0.96996 * 120.00287 * 180.02562 * 12 11 9 42 42 H 1.09000 * 109.64986 * 333.03785 * 21 19 17 43 43 H 1.09000 * 109.64619 * 93.47281 * 21 19 17 44 44 H 1.09005 * 110.02118 * 166.47102 * 22 21 19 45 45 H 1.09004 * 110.02668 * 287.83737 * 22 21 19 46 46 H 1.09009 * 110.79057 * 75.83410 * 23 22 21 47 47 H 1.08994 * 110.79268 * 199.10502 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.5816 -0.2531 2.5243 6 6 2.5477 0.8081 3.0548 7 7 2.1113 1.2453 4.3833 8 6 1.1861 2.3734 4.5158 9 6 2.5682 0.5996 5.5010 10 1 3.2008 -0.2700 5.4016 11 6 2.2181 1.0626 6.7619 12 7 1.0317 1.5967 6.9609 13 14 3.4309 0.9279 8.1764 14 1 4.1833 2.2015 8.3063 15 1 2.6934 0.6579 9.4367 16 1 4.3799 -0.1829 7.9105 17 6 2.8694 -1.7287 1.0746 18 8 3.3008 -2.0346 -0.0167 19 6 3.2899 -2.5052 2.2959 20 1 3.2478 -1.8699 3.1806 21 6 4.7127 -3.0684 2.1084 22 6 4.8090 -4.4190 2.8395 23 6 3.5518 -5.2321 2.4367 24 16 2.2214 -3.9737 2.5138 25 8 1.6620 -3.9594 3.8200 26 8 1.3753 -4.1128 1.3807 27 1 -0.3634 0.5137 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1299 1.4425 0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6766 1.9562 0.8901 34 1 0.5793 0.1697 2.4562 35 1 1.5708 -1.1062 3.2026 36 1 3.5501 0.3853 3.1230 37 1 2.5586 1.6613 2.3766 38 1 0.1664 1.9986 4.6042 39 1 1.4401 2.9490 5.4059 40 1 1.2634 3.0121 3.6358 41 1 0.7872 1.9206 7.8419 42 1 4.9133 -3.2114 1.0466 43 1 5.4401 -2.3738 2.5286 44 1 5.7105 -4.9476 2.5297 45 1 4.8218 -4.2597 3.9178 46 1 3.6535 -5.6261 1.4254 47 1 3.3680 -6.0377 3.1474 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278929968.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:57 Heat of formation + Delta-G solvation = -93.316358 kcal Electronic energy + Delta-G solvation = -29128.103020 eV Core-core repulsion = 25245.784125 eV Total energy + Delta-G solvation = -3882.318894 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.47185 -38.48948 -38.23685 -37.39694 -37.16099 -36.63130 -34.10745 -33.12645 -31.04111 -29.77789 -28.21015 -27.93675 -26.79819 -25.33884 -23.33591 -22.45520 -22.11768 -20.40783 -19.68369 -19.04649 -18.62381 -18.13623 -17.76928 -17.18233 -16.83993 -16.43824 -16.03994 -15.61667 -15.40769 -15.19514 -15.11035 -15.04462 -14.83513 -14.45177 -14.08751 -13.95929 -13.64682 -13.42751 -13.39642 -13.29887 -13.25762 -13.10360 -13.01029 -12.92274 -12.82443 -12.73514 -12.37719 -12.22794 -12.08592 -11.96925 -11.89976 -11.78139 -11.71898 -11.55683 -11.36474 -11.01066 -10.42251 -9.92537 -8.97009 -7.97337 -5.11527 -1.19925 1.21899 1.47514 1.51431 1.55120 1.59099 1.72754 2.47125 2.52909 2.77880 3.17098 3.20790 3.27538 3.60800 3.73610 3.77656 3.83589 4.01143 4.03899 4.10109 4.16251 4.29906 4.41101 4.48894 4.54997 4.61467 4.61627 4.70306 4.76332 4.82496 4.91980 4.97408 4.98884 4.99296 5.07183 5.14632 5.28558 5.33426 5.41445 5.49513 5.60840 5.75588 6.14750 6.25523 6.88606 7.10518 7.85894 8.26190 9.12309 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.010224 B = 0.005468 C = 0.004119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2738.053691 B = 5119.828464 C = 6796.104933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.126 3.874 3 C -0.156 4.156 4 N -0.596 5.596 5 C 0.080 3.920 6 C 0.140 3.860 7 N -0.613 5.613 8 C 0.162 3.838 9 C -0.274 4.274 10 H 0.082 0.918 11 C -0.040 4.040 12 N -0.917 5.917 13 Si 0.939 3.061 14 H -0.289 1.289 15 H -0.302 1.302 16 H -0.265 1.265 17 C 0.543 3.457 18 O -0.549 6.549 19 C -0.599 4.599 20 H 0.160 0.840 21 C -0.100 4.100 22 C -0.118 4.118 23 C -0.546 4.546 24 S 2.363 3.637 25 O -0.964 6.964 26 O -0.968 6.968 27 H 0.059 0.941 28 H 0.096 0.904 29 H 0.045 0.955 30 H 0.095 0.905 31 H 0.054 0.946 32 H 0.090 0.910 33 H 0.061 0.939 34 H 0.082 0.918 35 H 0.055 0.945 36 H 0.052 0.948 37 H 0.074 0.926 38 H -0.008 1.008 39 H 0.038 0.962 40 H 0.036 0.964 41 H 0.250 0.750 42 H 0.101 0.899 43 H 0.110 0.890 44 H 0.141 0.859 45 H 0.099 0.901 46 H 0.165 0.835 47 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.405 -8.992 -13.329 17.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.024 3.976 3 C -0.214 4.214 4 N -0.328 5.328 5 C -0.046 4.046 6 C 0.013 3.987 7 N -0.337 5.337 8 C 0.017 3.983 9 C -0.403 4.403 10 H 0.100 0.900 11 C -0.237 4.237 12 N -0.563 5.563 13 Si 0.767 3.233 14 H -0.216 1.216 15 H -0.229 1.229 16 H -0.189 1.189 17 C 0.329 3.671 18 O -0.428 6.428 19 C -0.709 4.709 20 H 0.178 0.822 21 C -0.139 4.139 22 C -0.157 4.157 23 C -0.681 4.681 24 S 2.549 3.451 25 O -0.961 6.961 26 O -0.965 6.965 27 H 0.078 0.922 28 H 0.115 0.885 29 H 0.065 0.935 30 H 0.113 0.887 31 H 0.074 0.926 32 H 0.109 0.891 33 H 0.080 0.920 34 H 0.100 0.900 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.092 0.908 38 H 0.010 0.990 39 H 0.057 0.943 40 H 0.055 0.945 41 H 0.059 0.941 42 H 0.120 0.880 43 H 0.129 0.871 44 H 0.159 0.841 45 H 0.118 0.882 46 H 0.183 0.817 47 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 6.510 -9.090 -13.648 17.643 hybrid contribution 0.496 0.282 1.283 1.404 sum 7.006 -8.808 -12.365 16.720 Atomic orbital electron populations 1.22172 0.93940 1.02105 1.03751 1.21295 0.94961 0.94096 0.87279 1.22219 1.01367 0.94323 1.03493 1.48175 1.45274 1.31227 1.08154 1.22628 1.01102 0.99440 0.81400 1.21432 0.95652 0.96040 0.85592 1.44338 1.53096 1.34809 1.01443 1.20860 0.91096 0.88575 0.97778 1.19492 1.24846 1.10944 0.84988 0.89988 1.25347 0.97322 1.01500 0.99483 1.70441 1.17585 1.45879 1.22359 0.85660 0.80399 0.77950 0.79252 1.21598 1.22922 1.18935 1.19263 0.78661 0.80506 0.88629 1.90616 1.55647 1.68621 1.27871 1.30728 1.15823 1.18407 1.05939 0.82191 1.22095 0.89725 0.97362 1.04734 1.22423 0.98255 0.92416 1.02591 1.30475 1.11400 1.12264 1.13981 1.09925 0.79847 0.81091 0.74234 1.93630 1.77142 1.85961 1.39383 1.93557 1.65535 1.85128 1.52318 0.92244 0.88533 0.93550 0.88736 0.92648 0.89114 0.92050 0.89993 0.92647 0.93006 0.90794 0.98984 0.94283 0.94507 0.94059 0.88015 0.87149 0.84057 0.88241 0.81707 0.81305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.95 9.08 71.98 0.65 -3.29 16 2 C 0.13 3.35 3.24 44.99 0.15 3.50 16 3 C -0.16 -3.50 8.43 71.98 0.61 -2.89 16 4 N -0.60 -18.71 2.40 -797.83 -1.91 -20.63 16 5 C 0.08 2.81 4.89 86.38 0.42 3.24 16 6 C 0.14 5.18 5.65 86.38 0.49 5.67 16 7 N -0.61 -28.82 2.93 -726.91 -2.13 -30.95 16 8 C 0.16 7.59 9.24 127.77 1.18 8.77 16 9 C -0.27 -14.37 9.64 84.03 0.81 -13.56 16 10 H 0.08 4.13 8.02 -2.91 -0.02 4.11 16 11 C -0.04 -2.19 4.85 84.86 0.41 -1.78 16 12 N -0.92 -53.01 10.80 21.65 0.23 -52.78 16 13 Si 0.94 43.57 29.67 68.60 2.04 45.60 16 14 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 15 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 16 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 17 C 0.54 17.33 6.19 87.66 0.54 17.87 16 18 O -0.55 -18.83 15.07 -3.01 -0.05 -18.88 16 19 C -0.60 -16.30 2.74 30.24 0.08 -16.22 16 20 H 0.16 4.67 5.87 -2.39 -0.01 4.66 16 21 C -0.10 -1.83 5.90 31.28 0.18 -1.65 16 22 C -0.12 -1.43 6.48 31.59 0.20 -1.23 16 23 C -0.55 -7.85 7.31 72.68 0.53 -7.32 16 24 S 2.36 66.79 5.95 -56.49 -0.34 66.45 16 25 O -0.96 -35.02 18.15 -127.49 -2.31 -37.34 16 26 O -0.97 -33.98 17.28 -127.49 -2.20 -36.18 16 27 H 0.06 1.51 6.53 -2.39 -0.02 1.49 16 28 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 30 H 0.09 2.64 6.94 -2.39 -0.02 2.62 16 31 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.06 1.47 6.01 -2.39 -0.01 1.46 16 34 H 0.08 2.92 6.19 -2.39 -0.01 2.90 16 35 H 0.06 2.15 6.27 -2.39 -0.01 2.13 16 36 H 0.05 1.87 7.66 -2.39 -0.02 1.85 16 37 H 0.07 2.44 5.13 -2.39 -0.01 2.43 16 38 H -0.01 -0.42 8.04 -2.39 -0.02 -0.44 16 39 H 0.04 2.03 6.19 -2.39 -0.01 2.02 16 40 H 0.04 1.43 7.83 -2.38 -0.02 1.41 16 41 H 0.25 14.07 8.31 -92.71 -0.77 13.29 16 42 H 0.10 1.88 6.88 -2.39 -0.02 1.87 16 43 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.14 0.79 8.14 -2.38 -0.02 0.77 16 45 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 46 H 0.17 1.71 8.14 -2.38 -0.02 1.69 16 47 H 0.17 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -76.72 376.33 0.55 -76.17 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: 0.96 Total: 17.43 kcal Atomic # 6 Polarization: -15.16 SS G_CDS: 6.26 Total: -8.89 kcal Atomic # 7 Polarization: -100.55 SS G_CDS: -3.81 Total: -104.36 kcal Atomic # 8 Polarization: -87.84 SS G_CDS: -4.56 Total: -92.40 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.04 Total: 45.60 kcal Atomic # 16 Polarization: 66.79 SS G_CDS: -0.34 Total: 66.45 kcal Total: -76.72 0.55 -76.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278929968.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.149 kcal (2) G-P(sol) polarization free energy of solvation -76.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds