Wall clock time and date at job start Tue Mar 31 2020 16:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47130 * 2 1 4 4 N 1.46505 * 109.47195 * 180.02562 * 3 2 1 5 5 C 1.34773 * 119.99619 * 90.00208 * 4 3 2 6 6 O 1.21286 * 119.99679 * 179.97438 * 5 4 3 7 7 C 1.50703 * 120.00386 * 359.97438 * 5 4 3 8 8 H 1.08996 * 109.46818 * 320.00325 * 7 5 4 9 9 N 1.46900 * 109.46977 * 200.00087 * 7 5 4 10 10 C 1.52996 * 109.46997 * 80.00295 * 7 5 4 11 11 C 1.52997 * 109.46947 * 184.99910 * 10 7 5 12 12 C 1.50706 * 109.47238 * 179.97438 * 11 10 7 13 13 H 1.07999 * 119.99515 * 0.02562 * 12 11 10 14 14 C 1.37870 * 120.00176 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00200 * 180.02562 * 14 12 11 16 16 Si 1.86802 * 120.00139 * 359.97438 * 14 12 11 17 17 H 1.48499 * 109.47145 * 89.99836 * 16 14 12 18 18 H 1.48496 * 109.47547 * 210.00333 * 16 14 12 19 19 H 1.48499 * 109.47030 * 330.00237 * 16 14 12 20 20 C 1.46495 * 120.00053 * 270.00123 * 4 3 2 21 21 H 1.09000 * 109.64085 * 0.42698 * 20 4 3 22 22 C 1.53871 * 109.64629 * 120.72294 * 20 4 3 23 23 C 1.55052 * 106.62311 * 167.03178 * 22 20 4 24 24 S 1.83284 * 102.56902 * 317.56831 * 23 22 20 25 25 O 1.42096 * 109.35571 * 269.81444 * 24 23 22 26 26 O 1.42096 * 109.47420 * 136.64367 * 24 23 22 27 27 C 1.54165 * 109.64560 * 240.00062 * 20 4 3 28 28 H 1.08998 * 109.47189 * 59.99786 * 1 2 3 29 29 H 1.09000 * 109.47425 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46878 * 299.99990 * 1 2 3 31 31 H 1.09000 * 109.46782 * 240.00517 * 2 1 3 32 32 H 1.08998 * 109.47189 * 120.00214 * 2 1 3 33 33 H 1.09004 * 109.47232 * 60.00227 * 3 2 1 34 34 H 1.08998 * 109.47259 * 300.00171 * 3 2 1 35 35 H 1.00900 * 110.99557 * 176.04504 * 9 7 5 36 36 H 1.00905 * 111.00223 * 300.00017 * 9 7 5 37 37 H 1.09001 * 109.47372 * 65.00220 * 10 7 5 38 38 H 1.09004 * 109.47108 * 304.99964 * 10 7 5 39 39 H 1.09001 * 109.46832 * 59.99979 * 11 10 7 40 40 H 1.09000 * 109.47611 * 300.00276 * 11 10 7 41 41 H 0.96999 * 120.00061 * 179.97438 * 15 14 12 42 42 H 1.08996 * 110.03144 * 286.32374 * 22 20 4 43 43 H 1.08997 * 110.02547 * 47.74418 * 22 20 4 44 44 H 1.08997 * 110.78704 * 199.29651 * 23 22 20 45 45 H 1.09000 * 110.78814 * 75.83646 * 23 22 20 46 46 H 1.08995 * 110.32085 * 331.14193 * 27 20 4 47 47 H 1.09005 * 110.31851 * 93.23442 * 27 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1783 1.4427 -1.1681 6 8 5.3912 1.4432 -1.1686 7 6 3.4243 1.4424 -2.4729 8 1 2.5611 0.7815 -2.3935 9 7 4.3063 0.9690 -3.5480 10 6 2.9517 2.8627 -2.7892 11 6 2.0813 2.8423 -4.0473 12 6 1.6153 4.2413 -4.3586 13 1 1.9108 5.0628 -3.7228 14 6 0.8118 4.4724 -5.4548 15 7 0.4055 5.6933 -5.7267 16 14 0.3012 3.0515 -6.5548 17 1 -0.9713 2.4715 -6.0556 18 1 0.1100 3.5438 -7.9427 19 1 1.3593 2.0096 -6.5406 20 6 4.2380 1.4423 1.2677 21 1 3.5326 1.4345 2.0986 22 6 5.1379 0.1965 1.3450 23 6 6.1124 0.4260 2.5290 24 16 6.5931 2.1818 2.3154 25 8 7.7476 2.2570 1.4903 26 8 6.5821 2.8330 3.5783 27 6 5.1259 2.6997 1.3535 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6766 1.9563 -0.8899 35 1 3.8059 0.8982 -4.4214 36 1 5.1147 1.5656 -3.6417 37 1 3.8166 3.5047 -2.9562 38 1 2.3702 3.2473 -1.9512 39 1 1.2164 2.2003 -3.8803 40 1 2.6627 2.4578 -4.8853 41 1 -0.1595 5.8559 -6.4982 42 1 4.5320 -0.6910 1.5269 43 1 5.6982 0.0827 0.4170 44 1 6.9820 -0.2260 2.4462 45 1 5.6051 0.2770 3.4821 46 1 5.4222 3.0226 0.3555 47 1 4.5974 3.5018 1.8688 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345482531.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:13 Heat of formation + Delta-G solvation = -111.599434 kcal Electronic energy + Delta-G solvation = -28238.957143 eV Core-core repulsion = 24355.845435 eV Total energy + Delta-G solvation = -3883.111708 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.66741 -37.21338 -37.11192 -36.18784 -36.10568 -34.96530 -32.85327 -32.54223 -30.40735 -29.94254 -27.22945 -26.38458 -25.30079 -23.79251 -22.09915 -21.69821 -20.33493 -19.08556 -18.93458 -17.73995 -17.21430 -16.87782 -16.59676 -16.13021 -15.74824 -15.09082 -15.05738 -14.75592 -14.47303 -14.37187 -14.27955 -13.97967 -13.75751 -13.32409 -13.20278 -12.97766 -12.75419 -12.62100 -12.42273 -12.25968 -12.24245 -12.17185 -12.02191 -11.83425 -11.75996 -11.53209 -11.31538 -11.10933 -10.94126 -10.85794 -10.55500 -10.37891 -10.13270 -9.94483 -9.42127 -9.38015 -8.91934 -8.67976 -8.40347 -6.17254 -4.17394 -0.17059 2.25857 2.59792 2.76756 3.19556 3.28839 3.29317 3.38019 3.79842 4.04169 4.21832 4.30688 4.31999 4.47200 4.59862 4.65035 4.70649 4.81882 4.95671 5.08688 5.13517 5.15439 5.16024 5.24950 5.32164 5.34885 5.44435 5.48453 5.57703 5.61137 5.72347 5.81667 5.89596 6.04098 6.09034 6.21769 6.35938 6.55754 7.00885 7.10389 7.12797 7.36905 7.59819 7.70019 8.14888 8.38099 8.86317 9.43707 10.95868 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015911 B = 0.003297 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.407688 B = 8490.535789 C = 9151.152375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.143 4.143 3 C 0.095 3.905 4 N -0.607 5.607 5 C 0.528 3.472 6 O -0.525 6.525 7 C 0.070 3.930 8 H 0.099 0.901 9 N -0.831 5.831 10 C -0.133 4.133 11 C -0.009 4.009 12 C -0.525 4.525 13 H 0.071 0.929 14 C 0.068 3.932 15 N -0.899 5.899 16 Si 0.880 3.120 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.265 1.265 20 C 0.163 3.837 21 H 0.108 0.892 22 C -0.140 4.140 23 C -0.584 4.584 24 S 2.394 3.606 25 O -0.926 6.926 26 O -0.944 6.944 27 C -0.611 4.611 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.082 0.918 34 H 0.099 0.901 35 H 0.351 0.649 36 H 0.349 0.651 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.013 0.987 40 H 0.016 0.984 41 H 0.264 0.736 42 H 0.096 0.904 43 H 0.111 0.889 44 H 0.139 0.861 45 H 0.136 0.864 46 H 0.153 0.847 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.652 -13.795 17.005 22.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.182 4.182 3 C -0.027 4.027 4 N -0.340 5.340 5 C 0.317 3.683 6 O -0.400 6.400 7 C -0.045 4.045 8 H 0.117 0.883 9 N -0.363 5.363 10 C -0.173 4.173 11 C -0.047 4.047 12 C -0.563 4.563 13 H 0.089 0.911 14 C -0.134 4.134 15 N -0.538 5.538 16 Si 0.708 3.292 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.190 1.190 20 C 0.058 3.942 21 H 0.126 0.874 22 C -0.179 4.179 23 C -0.714 4.714 24 S 2.576 3.424 25 O -0.923 6.923 26 O -0.941 6.941 27 C -0.741 4.741 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.101 0.899 34 H 0.117 0.883 35 H 0.166 0.834 36 H 0.163 0.837 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.032 0.968 40 H 0.034 0.966 41 H 0.074 0.926 42 H 0.115 0.885 43 H 0.130 0.870 44 H 0.157 0.843 45 H 0.154 0.846 46 H 0.171 0.829 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 5.083 -13.825 17.601 22.951 hybrid contribution -1.484 -0.047 -1.330 1.993 sum 3.600 -13.872 16.271 21.682 Atomic orbital electron populations 1.21720 0.94754 1.02065 1.02525 1.21991 0.96576 0.96889 1.02732 1.22013 0.78326 0.97472 1.04900 1.47944 1.06864 1.74647 1.04548 1.20912 0.88031 0.74227 0.85145 1.90639 1.13835 1.48320 1.87245 1.21598 0.95264 0.98327 0.89354 0.88293 1.58756 1.10988 1.57464 1.09069 1.22284 1.00825 0.93234 1.00954 1.19563 0.94338 0.98352 0.92406 1.21038 1.30949 0.92434 1.11872 0.91087 1.25036 0.95491 0.95531 0.97299 1.69906 1.35553 1.19987 1.28310 0.86777 0.79353 0.82964 0.80146 1.20243 1.21301 1.18987 1.21294 0.94044 0.90785 0.88108 0.87438 1.22693 0.97699 0.99074 0.98453 1.30551 1.09967 1.24385 1.06541 1.08902 0.77966 0.79426 0.76063 1.93646 1.44499 1.85378 1.68760 1.93604 1.87256 1.72863 1.40391 1.30978 1.18659 1.07040 1.17433 0.91849 0.92455 0.92544 0.91286 0.91812 0.89950 0.88327 0.83381 0.83733 0.91895 0.91721 0.96837 0.96555 0.92575 0.88507 0.87025 0.84300 0.84609 0.82876 0.84218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.91 37.16 0.37 -0.79 16 2 C -0.14 -1.14 6.12 -26.73 -0.16 -1.30 16 3 C 0.10 0.87 4.94 -4.04 -0.02 0.85 16 4 N -0.61 -6.42 2.44 -164.90 -0.40 -6.82 16 5 C 0.53 7.36 6.09 -10.99 -0.07 7.29 16 6 O -0.52 -8.51 12.67 5.55 0.07 -8.44 16 7 C 0.07 1.02 2.37 -68.86 -0.16 0.85 16 8 H 0.10 1.33 6.12 -51.93 -0.32 1.01 16 9 N -0.83 -12.46 8.94 -5.66 -0.05 -12.51 16 10 C -0.13 -2.33 4.45 -26.73 -0.12 -2.45 16 11 C -0.01 -0.19 3.81 -27.88 -0.11 -0.30 16 12 C -0.53 -14.01 9.66 -34.44 -0.33 -14.34 16 13 H 0.07 2.07 7.99 -52.49 -0.42 1.65 16 14 C 0.07 1.89 5.47 -17.82 -0.10 1.80 16 15 N -0.90 -26.71 13.96 55.43 0.77 -25.93 16 16 Si 0.88 20.45 27.47 -169.99 -4.67 15.78 16 17 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 18 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.27 -5.81 6.54 56.52 0.37 -5.44 16 20 C 0.16 1.40 2.97 -66.87 -0.20 1.20 16 21 H 0.11 0.57 7.81 -51.93 -0.41 0.17 16 22 C -0.14 -1.14 5.79 -25.19 -0.15 -1.29 16 23 C -0.58 -3.89 7.31 38.24 0.28 -3.61 16 24 S 2.39 24.27 6.10 -107.50 -0.66 23.62 16 25 O -0.93 -13.60 18.14 -57.73 -1.05 -14.65 16 26 O -0.94 -11.89 18.15 -57.73 -1.05 -12.94 16 27 C -0.61 -5.89 6.54 37.77 0.25 -5.65 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.63 7.15 -51.93 -0.37 0.26 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.08 0.59 7.93 -51.93 -0.41 0.17 16 34 H 0.10 1.06 4.83 -51.93 -0.25 0.81 16 35 H 0.35 5.17 7.55 -39.29 -0.30 4.88 16 36 H 0.35 5.40 8.58 -39.29 -0.34 5.06 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 38 H 0.06 1.09 6.43 -51.93 -0.33 0.75 16 39 H 0.01 0.28 7.57 -51.93 -0.39 -0.12 16 40 H 0.02 0.34 5.93 -51.93 -0.31 0.04 16 41 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 42 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.11 1.23 5.96 -51.93 -0.31 0.92 16 44 H 0.14 0.80 8.14 -51.93 -0.42 0.37 16 45 H 0.14 0.56 8.14 -51.93 -0.42 0.13 16 46 H 0.15 1.89 6.14 -51.93 -0.32 1.57 16 47 H 0.14 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 375.61 15.07 5.66 5.66 Total: -1.00 -35.93 375.61 -9.33 -45.26 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -7.44 Total: 8.70 kcal Atomic # 6 Polarization: -17.21 SS G_CDS: -0.52 Total: -17.73 kcal Atomic # 7 Polarization: -45.59 SS G_CDS: 0.32 Total: -45.27 kcal Atomic # 8 Polarization: -34.00 SS G_CDS: -2.02 Total: -36.03 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -4.67 Total: 15.78 kcal Atomic # 16 Polarization: 24.27 SS G_CDS: -0.66 Total: 23.62 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.93 -9.33 -45.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345482531.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.335 kcal (2) G-P(sol) polarization free energy of solvation -35.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds