Wall clock time and date at job start Tue Mar 31 2020 16:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47130 * 2 1 4 4 N 1.46505 * 109.47195 * 180.02562 * 3 2 1 5 5 C 1.34773 * 119.99619 * 90.00208 * 4 3 2 6 6 O 1.21286 * 119.99679 * 179.97438 * 5 4 3 7 7 C 1.50703 * 120.00386 * 359.97438 * 5 4 3 8 8 H 1.08996 * 109.46818 * 320.00325 * 7 5 4 9 9 N 1.46900 * 109.46977 * 200.00087 * 7 5 4 10 10 C 1.52996 * 109.46997 * 80.00295 * 7 5 4 11 11 C 1.52997 * 109.46947 * 184.99910 * 10 7 5 12 12 C 1.50706 * 109.47238 * 179.97438 * 11 10 7 13 13 H 1.07999 * 119.99515 * 0.02562 * 12 11 10 14 14 C 1.37870 * 120.00176 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00200 * 180.02562 * 14 12 11 16 16 Si 1.86802 * 120.00139 * 359.97438 * 14 12 11 17 17 H 1.48499 * 109.47145 * 89.99836 * 16 14 12 18 18 H 1.48496 * 109.47547 * 210.00333 * 16 14 12 19 19 H 1.48499 * 109.47030 * 330.00237 * 16 14 12 20 20 C 1.46495 * 120.00053 * 270.00123 * 4 3 2 21 21 H 1.09000 * 109.64085 * 0.42698 * 20 4 3 22 22 C 1.53871 * 109.64629 * 120.72294 * 20 4 3 23 23 C 1.55052 * 106.62311 * 167.03178 * 22 20 4 24 24 S 1.83284 * 102.56902 * 317.56831 * 23 22 20 25 25 O 1.42096 * 109.35571 * 269.81444 * 24 23 22 26 26 O 1.42096 * 109.47420 * 136.64367 * 24 23 22 27 27 C 1.54165 * 109.64560 * 240.00062 * 20 4 3 28 28 H 1.08998 * 109.47189 * 59.99786 * 1 2 3 29 29 H 1.09000 * 109.47425 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46878 * 299.99990 * 1 2 3 31 31 H 1.09000 * 109.46782 * 240.00517 * 2 1 3 32 32 H 1.08998 * 109.47189 * 120.00214 * 2 1 3 33 33 H 1.09004 * 109.47232 * 60.00227 * 3 2 1 34 34 H 1.08998 * 109.47259 * 300.00171 * 3 2 1 35 35 H 1.00900 * 110.99557 * 176.04504 * 9 7 5 36 36 H 1.00905 * 111.00223 * 300.00017 * 9 7 5 37 37 H 1.09001 * 109.47372 * 65.00220 * 10 7 5 38 38 H 1.09004 * 109.47108 * 304.99964 * 10 7 5 39 39 H 1.09001 * 109.46832 * 59.99979 * 11 10 7 40 40 H 1.09000 * 109.47611 * 300.00276 * 11 10 7 41 41 H 0.96999 * 120.00061 * 179.97438 * 15 14 12 42 42 H 1.08996 * 110.03144 * 286.32374 * 22 20 4 43 43 H 1.08997 * 110.02547 * 47.74418 * 22 20 4 44 44 H 1.08997 * 110.78704 * 199.29651 * 23 22 20 45 45 H 1.09000 * 110.78814 * 75.83646 * 23 22 20 46 46 H 1.08995 * 110.32085 * 331.14193 * 27 20 4 47 47 H 1.09005 * 110.31851 * 93.23442 * 27 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1783 1.4427 -1.1681 6 8 5.3912 1.4432 -1.1686 7 6 3.4243 1.4424 -2.4729 8 1 2.5611 0.7815 -2.3935 9 7 4.3063 0.9690 -3.5480 10 6 2.9517 2.8627 -2.7892 11 6 2.0813 2.8423 -4.0473 12 6 1.6153 4.2413 -4.3586 13 1 1.9108 5.0628 -3.7228 14 6 0.8118 4.4724 -5.4548 15 7 0.4055 5.6933 -5.7267 16 14 0.3012 3.0515 -6.5548 17 1 -0.9713 2.4715 -6.0556 18 1 0.1100 3.5438 -7.9427 19 1 1.3593 2.0096 -6.5406 20 6 4.2380 1.4423 1.2677 21 1 3.5326 1.4345 2.0986 22 6 5.1379 0.1965 1.3450 23 6 6.1124 0.4260 2.5290 24 16 6.5931 2.1818 2.3154 25 8 7.7476 2.2570 1.4903 26 8 6.5821 2.8330 3.5783 27 6 5.1259 2.6997 1.3535 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6766 1.9563 -0.8899 35 1 3.8059 0.8982 -4.4214 36 1 5.1147 1.5656 -3.6417 37 1 3.8166 3.5047 -2.9562 38 1 2.3702 3.2473 -1.9512 39 1 1.2164 2.2003 -3.8803 40 1 2.6627 2.4578 -4.8853 41 1 -0.1595 5.8559 -6.4982 42 1 4.5320 -0.6910 1.5269 43 1 5.6982 0.0827 0.4170 44 1 6.9820 -0.2260 2.4462 45 1 5.6051 0.2770 3.4821 46 1 5.4222 3.0226 0.3555 47 1 4.5974 3.5018 1.8688 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345482531.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:12 Heat of formation + Delta-G solvation = -140.737522 kcal Electronic energy + Delta-G solvation = -28240.220666 eV Core-core repulsion = 24355.845435 eV Total energy + Delta-G solvation = -3884.375230 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.62996 -38.14490 -38.06001 -37.25442 -37.08394 -35.88251 -34.75407 -33.24598 -32.09093 -30.66446 -28.59755 -27.09847 -26.40931 -24.96076 -23.11519 -22.34328 -21.83553 -20.05572 -19.83308 -19.00013 -18.48387 -18.01175 -17.48659 -17.05618 -16.60314 -16.31305 -16.10635 -15.91380 -15.71409 -15.44429 -15.13663 -14.97322 -14.73949 -14.67952 -14.41004 -14.12945 -13.76396 -13.55151 -13.34837 -13.22124 -13.15815 -13.11419 -13.02155 -12.84324 -12.75017 -12.53279 -12.38604 -12.11675 -12.01550 -11.89064 -11.73520 -11.69910 -11.45900 -11.40095 -11.22806 -10.77665 -10.56170 -9.79144 -9.63039 -8.30222 -6.35854 -0.93279 1.36993 1.39999 1.47032 1.50512 1.59123 1.92520 2.35528 2.63689 3.04244 3.05564 3.28779 3.48316 3.65418 3.71742 3.73507 3.91808 4.01688 4.05100 4.10130 4.16977 4.21008 4.41401 4.50649 4.55475 4.57331 4.66059 4.69849 4.78886 4.81913 4.88686 4.93754 5.01760 5.08270 5.25592 5.29500 5.36725 5.44125 5.52342 5.61335 5.62257 6.02517 6.24141 6.30988 6.46502 6.72640 7.13398 7.29212 8.86505 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015911 B = 0.003297 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.407688 B = 8490.535789 C = 9151.152375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.136 4.136 3 C 0.089 3.911 4 N -0.597 5.597 5 C 0.524 3.476 6 O -0.553 6.553 7 C 0.077 3.923 8 H 0.117 0.883 9 N -0.830 5.830 10 C -0.122 4.122 11 C -0.004 4.004 12 C -0.533 4.533 13 H 0.026 0.974 14 C 0.004 3.996 15 N -0.952 5.952 16 Si 0.951 3.049 17 H -0.262 1.262 18 H -0.291 1.291 19 H -0.239 1.239 20 C 0.154 3.846 21 H 0.156 0.844 22 C -0.142 4.142 23 C -0.548 4.548 24 S 2.388 3.612 25 O -0.985 6.985 26 O -0.974 6.974 27 C -0.610 4.610 28 H 0.046 0.954 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.055 0.945 32 H 0.085 0.915 33 H 0.110 0.890 34 H 0.078 0.922 35 H 0.353 0.647 36 H 0.344 0.656 37 H 0.038 0.962 38 H 0.068 0.932 39 H 0.031 0.969 40 H 0.023 0.977 41 H 0.266 0.734 42 H 0.128 0.872 43 H 0.080 0.920 44 H 0.153 0.847 45 H 0.177 0.823 46 H 0.122 0.878 47 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.129 -17.416 18.773 25.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.175 4.175 3 C -0.033 4.033 4 N -0.329 5.329 5 C 0.312 3.688 6 O -0.431 6.431 7 C -0.038 4.038 8 H 0.135 0.865 9 N -0.361 5.361 10 C -0.162 4.162 11 C -0.041 4.041 12 C -0.571 4.571 13 H 0.044 0.956 14 C -0.193 4.193 15 N -0.593 5.593 16 Si 0.774 3.226 17 H -0.187 1.187 18 H -0.217 1.217 19 H -0.163 1.163 20 C 0.049 3.951 21 H 0.173 0.827 22 C -0.181 4.181 23 C -0.682 4.682 24 S 2.576 3.424 25 O -0.982 6.982 26 O -0.971 6.971 27 C -0.741 4.741 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.104 0.896 33 H 0.128 0.872 34 H 0.096 0.904 35 H 0.168 0.832 36 H 0.157 0.843 37 H 0.057 0.943 38 H 0.086 0.914 39 H 0.049 0.951 40 H 0.041 0.959 41 H 0.075 0.925 42 H 0.147 0.853 43 H 0.099 0.901 44 H 0.171 0.829 45 H 0.195 0.805 46 H 0.140 0.860 47 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 3.574 -17.425 19.405 26.324 hybrid contribution -1.042 1.139 -1.809 2.378 sum 2.533 -16.286 17.596 24.110 Atomic orbital electron populations 1.21715 0.94499 1.02445 1.02339 1.21931 0.96642 0.95747 1.03161 1.22196 0.77114 0.98668 1.05304 1.47923 1.07580 1.73067 1.04288 1.20746 0.87613 0.74539 0.85904 1.90647 1.14957 1.49789 1.87723 1.21530 0.95928 0.96284 0.90060 0.86512 1.58782 1.10879 1.57149 1.09337 1.22094 0.99301 0.95216 0.99569 1.19478 0.95421 0.95024 0.94208 1.21410 1.30543 0.94079 1.11068 0.95601 1.26055 0.95587 0.98511 0.99150 1.70080 1.37031 1.22809 1.29369 0.85643 0.80059 0.79606 0.77259 1.18700 1.21736 1.16260 1.21744 0.94852 0.90151 0.88336 0.82677 1.22716 0.97898 0.99948 0.97525 1.30368 1.10500 1.19215 1.08075 1.08816 0.77349 0.81422 0.74845 1.93569 1.47703 1.87042 1.69920 1.93556 1.87591 1.74926 1.41072 1.30901 1.18822 1.08680 1.15684 0.93460 0.91805 0.91359 0.92586 0.89647 0.87219 0.90410 0.83204 0.84259 0.94265 0.91350 0.95108 0.95924 0.92549 0.85348 0.90111 0.82879 0.80505 0.85952 0.82298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.91 71.98 0.71 -1.08 16 2 C -0.14 -1.64 6.12 30.59 0.19 -1.45 16 3 C 0.09 1.33 4.94 86.38 0.43 1.76 16 4 N -0.60 -11.15 2.44 -794.01 -1.94 -13.09 16 5 C 0.52 14.14 6.09 87.66 0.53 14.67 16 6 O -0.55 -18.11 12.67 -3.05 -0.04 -18.15 16 7 C 0.08 2.18 2.37 44.17 0.10 2.28 16 8 H 0.12 2.88 6.12 -2.39 -0.01 2.87 16 9 N -0.83 -24.27 8.94 -171.80 -1.54 -25.81 16 10 C -0.12 -4.28 4.45 30.59 0.14 -4.15 16 11 C 0.00 -0.16 3.81 29.85 0.11 -0.05 16 12 C -0.53 -29.18 9.66 25.60 0.25 -28.94 16 13 H 0.03 1.59 7.99 -2.91 -0.02 1.57 16 14 C 0.00 0.21 5.47 84.65 0.46 0.67 16 15 N -0.95 -58.38 13.96 21.44 0.30 -58.08 16 16 Si 0.95 41.60 27.47 68.60 1.88 43.48 16 17 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 18 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 19 H -0.24 -9.40 6.54 99.48 0.65 -8.74 16 20 C 0.15 2.12 2.97 45.68 0.14 2.25 16 21 H 0.16 0.72 7.81 -2.39 -0.02 0.70 16 22 C -0.14 -1.79 5.79 31.59 0.18 -1.61 16 23 C -0.55 -5.23 7.31 72.68 0.53 -4.70 16 24 S 2.39 47.23 6.10 -56.49 -0.34 46.88 16 25 O -0.99 -30.48 18.14 -127.47 -2.31 -32.79 16 26 O -0.97 -23.99 18.15 -127.47 -2.31 -26.30 16 27 C -0.61 -11.19 6.54 72.38 0.47 -10.71 16 28 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.06 0.84 7.15 -2.39 -0.02 0.82 16 32 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.11 1.07 7.93 -2.39 -0.02 1.06 16 34 H 0.08 1.52 4.83 -2.39 -0.01 1.51 16 35 H 0.35 9.89 7.55 -89.69 -0.68 9.21 16 36 H 0.34 10.75 8.58 -89.69 -0.77 9.98 16 37 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.07 2.32 6.43 -2.38 -0.02 2.30 16 39 H 0.03 1.19 7.57 -2.39 -0.02 1.17 16 40 H 0.02 0.92 5.93 -2.39 -0.01 0.91 16 41 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 42 H 0.13 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.08 1.63 5.96 -2.39 -0.01 1.62 16 44 H 0.15 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.18 0.37 8.14 -2.39 -0.02 0.35 16 46 H 0.12 3.15 6.14 -2.39 -0.01 3.13 16 47 H 0.16 2.16 8.14 -2.38 -0.02 2.14 16 Total: -1.00 -83.33 375.61 -2.56 -85.89 By element: Atomic # 1 Polarization: 29.52 SS G_CDS: -0.51 Total: 29.01 kcal Atomic # 6 Polarization: -35.30 SS G_CDS: 4.25 Total: -31.05 kcal Atomic # 7 Polarization: -93.81 SS G_CDS: -3.18 Total: -96.98 kcal Atomic # 8 Polarization: -72.57 SS G_CDS: -4.66 Total: -77.24 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 1.88 Total: 43.48 kcal Atomic # 16 Polarization: 47.23 SS G_CDS: -0.34 Total: 46.88 kcal Total: -83.33 -2.56 -85.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345482531.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.847 kcal (2) G-P(sol) polarization free energy of solvation -83.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds