Wall clock time and date at job start Tue Mar 31 2020 16:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47495 * 2 1 4 4 N 1.46497 * 109.47353 * 185.37343 * 3 2 1 5 5 C 1.34778 * 120.00124 * 270.24194 * 4 3 2 6 6 O 1.21278 * 120.00013 * 185.38332 * 5 4 3 7 7 C 1.50707 * 119.99946 * 5.38033 * 5 4 3 8 8 H 1.08999 * 109.47004 * 336.13631 * 7 5 4 9 9 N 1.46892 * 109.46974 * 216.13523 * 7 5 4 10 10 C 1.53001 * 109.46913 * 96.13325 * 7 5 4 11 11 C 1.52999 * 109.46875 * 184.48890 * 10 7 5 12 12 C 1.50700 * 109.47252 * 180.02562 * 11 10 7 13 13 H 1.08001 * 119.99739 * 359.97438 * 12 11 10 14 14 C 1.37870 * 120.00242 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00148 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00070 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47278 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.47114 * 119.99825 * 16 14 12 19 19 H 1.48498 * 109.47330 * 239.99940 * 16 14 12 20 20 C 1.46498 * 120.00181 * 90.23847 * 4 3 2 21 21 H 1.09007 * 109.53243 * 359.63685 * 20 4 3 22 22 C 1.53875 * 109.64929 * 239.27520 * 20 4 3 23 23 C 1.55046 * 106.62635 * 192.96300 * 22 20 4 24 24 S 1.83563 * 102.55355 * 42.48760 * 23 22 20 25 25 O 1.42097 * 109.37467 * 223.35181 * 24 23 22 26 26 O 1.42102 * 109.41314 * 90.08571 * 24 23 22 27 27 C 1.54161 * 109.64780 * 120.00035 * 20 4 3 28 28 H 1.09002 * 109.46853 * 59.99934 * 1 2 3 29 29 H 1.09003 * 109.47106 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47108 * 299.99902 * 1 2 3 31 31 H 1.09003 * 109.47502 * 239.99730 * 2 1 3 32 32 H 1.08998 * 109.47323 * 120.00031 * 2 1 3 33 33 H 1.08996 * 109.46372 * 65.37393 * 3 2 1 34 34 H 1.08998 * 109.46409 * 305.37460 * 3 2 1 35 35 H 1.00902 * 110.99721 * 176.04663 * 9 7 5 36 36 H 1.00901 * 111.00409 * 299.99811 * 9 7 5 37 37 H 1.09005 * 109.47282 * 304.48426 * 10 7 5 38 38 H 1.08996 * 109.46899 * 64.48394 * 10 7 5 39 39 H 1.09005 * 109.46786 * 299.99839 * 11 10 7 40 40 H 1.08991 * 109.47351 * 59.99810 * 11 10 7 41 41 H 0.97002 * 120.00544 * 179.97438 * 15 14 12 42 42 H 1.09000 * 110.02776 * 312.25624 * 22 20 4 43 43 H 1.09007 * 110.02558 * 73.67699 * 22 20 4 44 44 H 1.08998 * 110.79068 * 160.70103 * 23 22 20 45 45 H 1.08999 * 110.79305 * 283.97828 * 23 22 20 46 46 H 1.09003 * 110.31988 * 266.66509 * 27 20 4 47 47 H 1.08997 * 110.31887 * 28.75551 * 27 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.4993 1.4445 -0.1293 5 6 4.2736 1.4040 0.9731 6 8 5.4780 1.5041 0.8721 7 6 3.6428 1.2346 2.3312 8 1 2.6089 1.5782 2.2970 9 7 4.3889 2.0245 3.3197 10 6 3.6763 -0.2426 2.7283 11 6 2.9372 -0.4310 4.0546 12 6 2.9707 -1.8859 4.4462 13 1 3.4690 -2.6043 3.8122 14 6 2.3653 -2.2997 5.6137 15 7 1.7589 -1.4248 6.3859 16 14 2.4063 -4.1032 6.0986 17 1 3.1453 -4.8762 5.0683 18 1 3.0889 -4.2479 7.4095 19 1 1.0178 -4.6192 6.2039 20 6 4.1170 1.4904 -1.4569 21 1 3.3391 1.5123 -2.2203 22 6 5.0043 0.2494 -1.6580 23 6 5.8702 0.5221 -2.9148 24 16 6.3730 2.2720 -2.6809 25 8 6.2508 2.9665 -3.9146 26 8 7.5952 2.3196 -1.9576 27 6 4.9960 2.7512 -1.5764 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.7574 1.9277 0.9342 34 1 1.6002 1.9833 -0.8380 35 1 3.9479 1.9791 4.2261 36 1 5.3511 1.7249 3.3702 37 1 3.1916 -0.8380 1.9545 38 1 4.7114 -0.5653 2.8401 39 1 3.4219 0.1644 4.8284 40 1 1.9022 -0.1083 3.9428 41 1 1.3327 -1.7160 7.2072 42 1 5.6445 0.1034 -0.7880 43 1 4.3829 -0.6320 -1.8169 44 1 6.7426 -0.1312 -2.9328 45 1 5.2809 0.4032 -3.8240 46 1 4.4259 3.5699 -2.0156 47 1 5.3788 3.0398 -0.5975 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345482534.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:19 Heat of formation + Delta-G solvation = -113.385309 kcal Electronic energy + Delta-G solvation = -28242.540295 eV Core-core repulsion = 24359.351145 eV Total energy + Delta-G solvation = -3883.189149 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.60118 -37.19571 -37.06308 -36.16043 -35.99670 -34.84914 -32.89703 -32.43134 -29.98476 -29.90767 -26.89415 -26.32023 -25.29455 -23.78547 -22.15102 -21.68993 -20.43419 -19.03259 -18.72196 -17.74771 -17.17832 -16.68254 -16.41818 -15.97554 -15.73081 -15.09001 -14.94928 -14.79212 -14.50377 -14.40870 -14.07144 -13.93428 -13.47373 -13.27513 -13.23203 -12.96444 -12.60188 -12.47705 -12.29632 -12.27337 -12.17011 -11.99596 -11.89875 -11.76495 -11.63693 -11.39080 -11.12172 -10.99646 -10.89631 -10.76652 -10.67601 -10.50432 -9.95600 -9.85045 -9.31863 -9.25342 -8.86310 -8.49194 -8.29534 -6.13658 -4.16731 -0.15341 2.27144 2.66280 2.81297 3.22305 3.30858 3.34254 3.39066 3.82186 4.07526 4.25283 4.33849 4.35281 4.50700 4.62827 4.71699 4.77118 4.91026 5.09758 5.15993 5.19944 5.21390 5.22957 5.30917 5.38941 5.39708 5.55152 5.62138 5.69001 5.73684 5.76459 5.96727 6.01959 6.18854 6.30782 6.37642 6.53294 6.82419 7.18131 7.44589 7.47136 7.56414 7.80776 7.83626 8.20160 8.25897 8.89279 9.48616 10.97184 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017040 B = 0.003106 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.811337 B = 9013.910778 C = 9436.496202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.155 4.155 3 C 0.106 3.894 4 N -0.607 5.607 5 C 0.530 3.470 6 O -0.530 6.530 7 C 0.071 3.929 8 H 0.097 0.903 9 N -0.834 5.834 10 C -0.138 4.138 11 C 0.026 3.974 12 C -0.523 4.523 13 H 0.055 0.945 14 C 0.059 3.941 15 N -0.892 5.892 16 Si 0.891 3.109 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.283 1.283 20 C 0.164 3.836 21 H 0.107 0.893 22 C -0.140 4.140 23 C -0.582 4.582 24 S 2.391 3.609 25 O -0.946 6.946 26 O -0.925 6.925 27 C -0.611 4.611 28 H 0.050 0.950 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.356 0.644 36 H 0.347 0.653 37 H 0.059 0.941 38 H 0.057 0.943 39 H 0.017 0.983 40 H 0.018 0.982 41 H 0.261 0.739 42 H 0.107 0.893 43 H 0.099 0.901 44 H 0.139 0.861 45 H 0.136 0.864 46 H 0.137 0.863 47 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.511 5.931 -18.382 19.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.194 4.194 3 C -0.017 4.017 4 N -0.341 5.341 5 C 0.319 3.681 6 O -0.405 6.405 7 C -0.044 4.044 8 H 0.115 0.885 9 N -0.367 5.367 10 C -0.177 4.177 11 C -0.011 4.011 12 C -0.561 4.561 13 H 0.073 0.927 14 C -0.142 4.142 15 N -0.531 5.531 16 Si 0.719 3.281 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.209 1.209 20 C 0.058 3.942 21 H 0.125 0.875 22 C -0.179 4.179 23 C -0.712 4.712 24 S 2.574 3.426 25 O -0.943 6.943 26 O -0.922 6.922 27 C -0.741 4.741 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.103 0.897 33 H 0.107 0.893 34 H 0.097 0.903 35 H 0.171 0.829 36 H 0.161 0.839 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.036 0.964 40 H 0.036 0.964 41 H 0.071 0.929 42 H 0.125 0.875 43 H 0.118 0.882 44 H 0.157 0.843 45 H 0.154 0.846 46 H 0.155 0.845 47 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 0.645 7.182 -19.077 20.394 hybrid contribution -0.763 -2.426 1.158 2.794 sum -0.117 4.756 -17.919 18.540 Atomic orbital electron populations 1.21674 0.94892 1.02333 1.01728 1.22184 0.96620 0.96737 1.03834 1.21865 0.78465 0.97734 1.03621 1.47985 1.06967 1.74563 1.04579 1.21006 0.87006 0.73977 0.86100 1.90630 1.14622 1.48485 1.86804 1.21646 0.98269 0.95548 0.88901 0.88542 1.58842 1.07093 1.58622 1.12095 1.22446 1.01872 0.91967 1.01462 1.19085 0.95022 0.97235 0.89761 1.21189 1.35131 0.93362 1.06409 0.92706 1.24997 0.95224 0.97592 0.96422 1.69951 1.36074 1.33697 1.13397 0.86550 0.77768 0.85244 0.78540 1.19762 1.20930 1.20945 1.21284 0.95538 0.90753 0.86623 0.87474 1.22672 0.99149 0.99285 0.96838 1.30563 1.10637 1.24087 1.05908 1.08983 0.77836 0.79423 0.76388 1.93599 1.87386 1.71220 1.42061 1.93650 1.39942 1.85573 1.73078 1.30978 1.17659 1.06687 1.18746 0.93063 0.92222 0.92126 0.91856 0.89690 0.89256 0.90270 0.82884 0.83942 0.92221 0.92469 0.96447 0.96379 0.92920 0.87452 0.88241 0.84318 0.84564 0.84504 0.82449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.91 37.15 0.37 -0.96 16 2 C -0.16 -1.52 6.26 -26.73 -0.17 -1.69 16 3 C 0.11 0.97 5.09 -4.04 -0.02 0.95 16 4 N -0.61 -6.66 2.44 -164.90 -0.40 -7.06 16 5 C 0.53 7.74 5.96 -10.98 -0.07 7.67 16 6 O -0.53 -8.96 12.87 5.56 0.07 -8.89 16 7 C 0.07 1.11 2.72 -68.86 -0.19 0.92 16 8 H 0.10 1.41 5.62 -51.93 -0.29 1.11 16 9 N -0.83 -13.39 9.07 -5.66 -0.05 -13.44 16 10 C -0.14 -2.55 4.62 -26.73 -0.12 -2.67 16 11 C 0.03 0.60 4.73 -27.88 -0.13 0.47 16 12 C -0.52 -13.83 9.11 -34.44 -0.31 -14.14 16 13 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 14 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 15 N -0.89 -25.27 13.29 55.43 0.74 -24.54 16 16 Si 0.89 20.78 29.54 -169.99 -5.02 15.76 16 17 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 C 0.16 1.45 2.97 -66.87 -0.20 1.26 16 21 H 0.11 0.59 7.80 -51.93 -0.40 0.19 16 22 C -0.14 -1.26 5.80 -25.19 -0.15 -1.41 16 23 C -0.58 -4.19 7.32 38.24 0.28 -3.91 16 24 S 2.39 24.45 6.12 -107.50 -0.66 23.79 16 25 O -0.95 -11.82 18.15 -57.71 -1.05 -12.86 16 26 O -0.93 -13.71 18.15 -57.71 -1.05 -14.76 16 27 C -0.61 -5.77 6.52 37.76 0.25 -5.52 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 1.08 5.34 -51.93 -0.28 0.80 16 33 H 0.09 0.87 5.90 -51.93 -0.31 0.56 16 34 H 0.08 0.52 7.92 -51.93 -0.41 0.11 16 35 H 0.36 5.79 7.53 -39.29 -0.30 5.50 16 36 H 0.35 5.73 8.57 -39.29 -0.34 5.40 16 37 H 0.06 1.06 5.67 -51.93 -0.29 0.76 16 38 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.02 0.42 6.86 -51.93 -0.36 0.07 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 42 H 0.11 1.28 6.15 -51.93 -0.32 0.96 16 43 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.14 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.14 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.14 0.94 8.14 -51.93 -0.42 0.52 16 47 H 0.16 1.92 5.97 -51.93 -0.31 1.61 16 LS Contribution 378.22 15.07 5.70 5.70 Total: -1.00 -35.00 378.22 -9.65 -44.65 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -7.37 Total: 9.18 kcal Atomic # 6 Polarization: -16.97 SS G_CDS: -0.56 Total: -17.52 kcal Atomic # 7 Polarization: -45.33 SS G_CDS: 0.28 Total: -45.04 kcal Atomic # 8 Polarization: -34.49 SS G_CDS: -2.02 Total: -36.51 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 16 Polarization: 24.45 SS G_CDS: -0.66 Total: 23.79 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.00 -9.65 -44.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345482534.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.733 kcal (2) G-P(sol) polarization free energy of solvation -35.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds