Wall clock time and date at job start Tue Mar 31 2020 16:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47495 * 2 1 4 4 N 1.46497 * 109.47353 * 185.37343 * 3 2 1 5 5 C 1.34778 * 120.00124 * 270.24194 * 4 3 2 6 6 O 1.21278 * 120.00013 * 185.38332 * 5 4 3 7 7 C 1.50707 * 119.99946 * 5.38033 * 5 4 3 8 8 H 1.08999 * 109.47004 * 336.13631 * 7 5 4 9 9 N 1.46892 * 109.46974 * 216.13523 * 7 5 4 10 10 C 1.53001 * 109.46913 * 96.13325 * 7 5 4 11 11 C 1.52999 * 109.46875 * 184.48890 * 10 7 5 12 12 C 1.50700 * 109.47252 * 180.02562 * 11 10 7 13 13 H 1.08001 * 119.99739 * 359.97438 * 12 11 10 14 14 C 1.37870 * 120.00242 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00148 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00070 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47278 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.47114 * 119.99825 * 16 14 12 19 19 H 1.48498 * 109.47330 * 239.99940 * 16 14 12 20 20 C 1.46498 * 120.00181 * 90.23847 * 4 3 2 21 21 H 1.09007 * 109.53243 * 359.63685 * 20 4 3 22 22 C 1.53875 * 109.64929 * 239.27520 * 20 4 3 23 23 C 1.55046 * 106.62635 * 192.96300 * 22 20 4 24 24 S 1.83563 * 102.55355 * 42.48760 * 23 22 20 25 25 O 1.42097 * 109.37467 * 223.35181 * 24 23 22 26 26 O 1.42102 * 109.41314 * 90.08571 * 24 23 22 27 27 C 1.54161 * 109.64780 * 120.00035 * 20 4 3 28 28 H 1.09002 * 109.46853 * 59.99934 * 1 2 3 29 29 H 1.09003 * 109.47106 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47108 * 299.99902 * 1 2 3 31 31 H 1.09003 * 109.47502 * 239.99730 * 2 1 3 32 32 H 1.08998 * 109.47323 * 120.00031 * 2 1 3 33 33 H 1.08996 * 109.46372 * 65.37393 * 3 2 1 34 34 H 1.08998 * 109.46409 * 305.37460 * 3 2 1 35 35 H 1.00902 * 110.99721 * 176.04663 * 9 7 5 36 36 H 1.00901 * 111.00409 * 299.99811 * 9 7 5 37 37 H 1.09005 * 109.47282 * 304.48426 * 10 7 5 38 38 H 1.08996 * 109.46899 * 64.48394 * 10 7 5 39 39 H 1.09005 * 109.46786 * 299.99839 * 11 10 7 40 40 H 1.08991 * 109.47351 * 59.99810 * 11 10 7 41 41 H 0.97002 * 120.00544 * 179.97438 * 15 14 12 42 42 H 1.09000 * 110.02776 * 312.25624 * 22 20 4 43 43 H 1.09007 * 110.02558 * 73.67699 * 22 20 4 44 44 H 1.08998 * 110.79068 * 160.70103 * 23 22 20 45 45 H 1.08999 * 110.79305 * 283.97828 * 23 22 20 46 46 H 1.09003 * 110.31988 * 266.66509 * 27 20 4 47 47 H 1.08997 * 110.31887 * 28.75551 * 27 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.4993 1.4445 -0.1293 5 6 4.2736 1.4040 0.9731 6 8 5.4780 1.5041 0.8721 7 6 3.6428 1.2346 2.3312 8 1 2.6089 1.5782 2.2970 9 7 4.3889 2.0245 3.3197 10 6 3.6763 -0.2426 2.7283 11 6 2.9372 -0.4310 4.0546 12 6 2.9707 -1.8859 4.4462 13 1 3.4690 -2.6043 3.8122 14 6 2.3653 -2.2997 5.6137 15 7 1.7589 -1.4248 6.3859 16 14 2.4063 -4.1032 6.0986 17 1 3.1453 -4.8762 5.0683 18 1 3.0889 -4.2479 7.4095 19 1 1.0178 -4.6192 6.2039 20 6 4.1170 1.4904 -1.4569 21 1 3.3391 1.5123 -2.2203 22 6 5.0043 0.2494 -1.6580 23 6 5.8702 0.5221 -2.9148 24 16 6.3730 2.2720 -2.6809 25 8 6.2508 2.9665 -3.9146 26 8 7.5952 2.3196 -1.9576 27 6 4.9960 2.7512 -1.5764 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.7574 1.9277 0.9342 34 1 1.6002 1.9833 -0.8380 35 1 3.9479 1.9791 4.2261 36 1 5.3511 1.7249 3.3702 37 1 3.1916 -0.8380 1.9545 38 1 4.7114 -0.5653 2.8401 39 1 3.4219 0.1644 4.8284 40 1 1.9022 -0.1083 3.9428 41 1 1.3327 -1.7160 7.2072 42 1 5.6445 0.1034 -0.7880 43 1 4.3829 -0.6320 -1.8169 44 1 6.7426 -0.1312 -2.9328 45 1 5.2809 0.4032 -3.8240 46 1 4.4259 3.5699 -2.0156 47 1 5.3788 3.0398 -0.5975 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345482534.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:18 Heat of formation + Delta-G solvation = -140.757367 kcal Electronic energy + Delta-G solvation = -28243.727236 eV Core-core repulsion = 24359.351145 eV Total energy + Delta-G solvation = -3884.376091 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.62233 -38.13302 -38.05546 -37.20189 -37.06992 -35.87122 -34.76756 -33.23792 -31.70716 -30.64921 -28.33413 -27.07421 -26.50448 -25.09128 -23.15573 -22.58486 -21.81824 -19.88951 -19.81714 -18.78816 -18.31868 -18.02138 -17.48880 -16.98193 -16.59893 -16.53249 -16.13315 -15.94729 -15.79854 -15.24351 -15.13825 -14.79499 -14.73042 -14.61377 -14.24742 -13.99266 -13.79718 -13.51622 -13.33737 -13.22113 -13.11594 -13.04175 -12.99337 -12.82492 -12.76433 -12.55528 -12.48155 -12.29606 -12.12949 -11.93319 -11.72697 -11.61416 -11.30586 -11.26878 -11.18502 -10.56560 -10.53819 -9.76383 -9.66838 -8.21627 -6.31392 -0.91975 1.37575 1.39894 1.47582 1.50957 1.57866 1.93603 2.39383 2.63772 3.06248 3.12343 3.30686 3.48872 3.65321 3.72921 3.77292 3.90202 3.99288 4.05404 4.14609 4.20861 4.27728 4.44966 4.53967 4.54303 4.60753 4.68970 4.79604 4.82929 4.85916 4.90189 4.98783 5.04636 5.09371 5.27006 5.36820 5.46833 5.52538 5.64021 5.66351 5.82425 6.03480 6.21286 6.29847 6.43877 6.83874 7.12467 7.37738 8.89178 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017040 B = 0.003106 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.811337 B = 9013.910778 C = 9436.496202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.152 4.152 3 C 0.101 3.899 4 N -0.596 5.596 5 C 0.528 3.472 6 O -0.558 6.558 7 C 0.075 3.925 8 H 0.109 0.891 9 N -0.833 5.833 10 C -0.121 4.121 11 C 0.034 3.966 12 C -0.541 4.541 13 H 0.052 0.948 14 C 0.007 3.993 15 N -0.925 5.925 16 Si 0.955 3.045 17 H -0.266 1.266 18 H -0.282 1.282 19 H -0.276 1.276 20 C 0.154 3.846 21 H 0.159 0.841 22 C -0.146 4.146 23 C -0.551 4.551 24 S 2.388 3.612 25 O -0.972 6.972 26 O -0.985 6.985 27 C -0.604 4.604 28 H 0.077 0.923 29 H 0.051 0.949 30 H 0.047 0.953 31 H 0.081 0.919 32 H 0.049 0.951 33 H 0.080 0.920 34 H 0.120 0.880 35 H 0.352 0.648 36 H 0.343 0.657 37 H 0.069 0.931 38 H 0.039 0.961 39 H -0.001 1.001 40 H 0.003 0.997 41 H 0.263 0.737 42 H 0.073 0.927 43 H 0.123 0.877 44 H 0.149 0.851 45 H 0.177 0.823 46 H 0.166 0.834 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.198 5.014 -20.988 21.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.190 4.190 3 C -0.021 4.021 4 N -0.328 5.328 5 C 0.316 3.684 6 O -0.436 6.436 7 C -0.040 4.040 8 H 0.126 0.874 9 N -0.364 5.364 10 C -0.160 4.160 11 C -0.003 4.003 12 C -0.579 4.579 13 H 0.071 0.929 14 C -0.191 4.191 15 N -0.565 5.565 16 Si 0.781 3.219 17 H -0.190 1.190 18 H -0.207 1.207 19 H -0.202 1.202 20 C 0.050 3.950 21 H 0.177 0.823 22 C -0.185 4.185 23 C -0.684 4.684 24 S 2.576 3.424 25 O -0.969 6.969 26 O -0.982 6.982 27 C -0.735 4.735 28 H 0.096 0.904 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.099 0.901 32 H 0.068 0.932 33 H 0.098 0.902 34 H 0.138 0.862 35 H 0.167 0.833 36 H 0.156 0.844 37 H 0.087 0.913 38 H 0.058 0.942 39 H 0.017 0.983 40 H 0.021 0.979 41 H 0.072 0.928 42 H 0.091 0.909 43 H 0.141 0.859 44 H 0.167 0.833 45 H 0.195 0.805 46 H 0.184 0.816 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.038 6.298 -21.716 22.634 hybrid contribution -0.304 -2.158 1.958 2.930 sum -1.342 4.140 -19.758 20.231 Atomic orbital electron populations 1.21661 0.94242 1.02084 1.02474 1.22120 0.97127 0.96846 1.02922 1.22078 0.77156 0.97782 1.05041 1.47949 1.07560 1.72823 1.04472 1.20692 0.86724 0.74388 0.86550 1.90637 1.15794 1.49955 1.87212 1.21594 0.99148 0.93321 0.89966 0.87366 1.58869 1.06903 1.58538 1.12086 1.22170 0.99962 0.94513 0.99365 1.18919 0.94427 0.95342 0.91602 1.21607 1.34800 0.94944 1.06565 0.92923 1.25814 0.94942 1.01848 0.96511 1.70058 1.36947 1.35650 1.13862 0.85544 0.78028 0.80222 0.78138 1.19048 1.20741 1.20169 1.21744 0.96784 0.90093 0.86385 0.82318 1.22711 0.99253 1.00352 0.96217 1.30407 1.11252 1.19802 1.06921 1.08812 0.77202 0.80960 0.75466 1.93557 1.87617 1.72966 1.42757 1.93575 1.43478 1.87046 1.74125 1.30863 1.17446 1.08252 1.16929 0.90366 0.93016 0.93333 0.90066 0.93239 0.90194 0.86161 0.83325 0.84385 0.91255 0.94180 0.98272 0.97887 0.92771 0.90864 0.85875 0.83327 0.80481 0.81647 0.85326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.91 71.98 0.71 -1.52 16 2 C -0.15 -2.54 6.26 30.59 0.19 -2.35 16 3 C 0.10 1.51 5.09 86.38 0.44 1.94 16 4 N -0.60 -11.57 2.44 -794.00 -1.94 -13.51 16 5 C 0.53 15.18 5.96 87.66 0.52 15.70 16 6 O -0.56 -19.23 12.87 -3.02 -0.04 -19.27 16 7 C 0.07 2.35 2.72 44.17 0.12 2.47 16 8 H 0.11 3.15 5.62 -2.39 -0.01 3.13 16 9 N -0.83 -27.65 9.07 -171.80 -1.56 -29.21 16 10 C -0.12 -4.56 4.62 30.59 0.14 -4.42 16 11 C 0.03 1.63 4.73 29.85 0.14 1.77 16 12 C -0.54 -29.10 9.11 25.60 0.23 -28.87 16 13 H 0.05 2.79 7.74 -2.91 -0.02 2.76 16 14 C 0.01 0.41 5.46 84.65 0.46 0.87 16 15 N -0.93 -53.23 13.29 21.44 0.28 -52.94 16 16 Si 0.96 42.69 29.54 68.60 2.03 44.72 16 17 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 18 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 19 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 20 C 0.15 2.17 2.97 45.68 0.14 2.31 16 21 H 0.16 0.69 7.80 -2.38 -0.02 0.67 16 22 C -0.15 -2.18 5.80 31.59 0.18 -2.00 16 23 C -0.55 -6.06 7.32 72.68 0.53 -5.53 16 24 S 2.39 46.55 6.12 -56.49 -0.35 46.20 16 25 O -0.97 -23.04 18.15 -127.49 -2.31 -25.35 16 26 O -0.99 -30.43 18.15 -127.49 -2.31 -32.75 16 27 C -0.60 -10.23 6.52 72.38 0.47 -9.75 16 28 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.08 1.07 8.14 -2.39 -0.02 1.06 16 32 H 0.05 1.20 5.34 -2.39 -0.01 1.18 16 33 H 0.08 1.38 5.90 -2.39 -0.01 1.36 16 34 H 0.12 0.90 7.92 -2.39 -0.02 0.88 16 35 H 0.35 11.99 7.53 -89.69 -0.68 11.32 16 36 H 0.34 11.88 8.57 -89.69 -0.77 11.11 16 37 H 0.07 2.48 5.67 -2.38 -0.01 2.46 16 38 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.00 -0.05 6.86 -2.38 -0.02 -0.07 16 40 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 41 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 42 H 0.07 1.68 6.15 -2.39 -0.01 1.66 16 43 H 0.12 1.31 8.14 -2.38 -0.02 1.29 16 44 H 0.15 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.18 0.60 8.14 -2.39 -0.02 0.58 16 46 H 0.17 1.75 8.14 -2.39 -0.02 1.73 16 47 H 0.13 3.13 5.97 -2.39 -0.01 3.11 16 Total: -1.00 -79.46 378.22 -2.36 -81.82 By element: Atomic # 1 Polarization: 30.11 SS G_CDS: -0.45 Total: 29.66 kcal Atomic # 6 Polarization: -33.67 SS G_CDS: 4.29 Total: -29.38 kcal Atomic # 7 Polarization: -92.45 SS G_CDS: -3.22 Total: -95.66 kcal Atomic # 8 Polarization: -72.69 SS G_CDS: -4.67 Total: -77.36 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Atomic # 16 Polarization: 46.55 SS G_CDS: -0.35 Total: 46.20 kcal Total: -79.46 -2.36 -81.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345482534.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.939 kcal (2) G-P(sol) polarization free energy of solvation -79.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds