Wall clock time and date at job start Tue Mar 31 2020 16:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.47360 * 2 1 4 4 N 1.46498 * 109.47236 * 180.02562 * 3 2 1 5 5 C 1.36938 * 119.99895 * 271.59332 * 4 3 2 6 6 H 1.07999 * 120.00085 * 326.15821 * 5 4 3 7 7 C 1.38817 * 119.99825 * 146.15384 * 5 4 3 8 8 N 1.31620 * 119.99870 * 336.42615 * 7 5 4 9 9 Si 1.86796 * 119.99889 * 156.42696 * 7 5 4 10 10 H 1.48503 * 109.47311 * 84.96748 * 9 7 5 11 11 H 1.48500 * 109.47214 * 204.96759 * 9 7 5 12 12 H 1.48504 * 109.47194 * 324.96921 * 9 7 5 13 13 C 1.46495 * 120.00098 * 91.59574 * 4 3 2 14 14 C 1.53002 * 109.47373 * 90.00215 * 13 4 3 15 15 N 1.46502 * 109.47096 * 179.97438 * 14 13 4 16 16 C 1.34769 * 119.99797 * 179.97438 * 15 14 13 17 17 O 1.21283 * 120.00144 * 359.97438 * 16 15 14 18 18 C 1.50697 * 120.00024 * 180.02562 * 16 15 14 19 19 C 1.53000 * 110.28843 * 74.29814 * 18 16 15 20 20 C 1.54164 * 110.32040 * 196.41660 * 18 16 15 21 21 C 1.53875 * 108.70589 * 146.81175 * 20 18 16 22 22 C 1.55045 * 106.62394 * 312.81467 * 21 20 18 23 23 S 1.82928 * 110.31829 * 312.18324 * 18 16 15 24 24 O 1.42094 * 109.35098 * 352.37290 * 23 18 16 25 25 O 1.42097 * 109.35204 * 125.57474 * 23 18 16 26 26 H 1.08996 * 109.47423 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46327 * 299.99961 * 1 2 3 28 28 H 1.08999 * 109.46925 * 59.99217 * 1 2 3 29 29 H 1.08999 * 109.46695 * 120.00282 * 2 1 3 30 30 H 1.08997 * 109.46279 * 240.00206 * 2 1 3 31 31 H 1.09000 * 109.47309 * 300.00595 * 3 2 1 32 32 H 1.09004 * 109.47248 * 59.99914 * 3 2 1 33 33 H 0.96995 * 119.99462 * 179.97438 * 8 7 5 34 34 H 1.09007 * 109.46926 * 210.00319 * 13 4 3 35 35 H 1.08997 * 109.46912 * 329.99665 * 13 4 3 36 36 H 1.08996 * 109.46775 * 299.99884 * 14 13 4 37 37 H 1.09002 * 109.47083 * 59.99837 * 14 13 4 38 38 H 0.97002 * 120.00006 * 0.02562 * 15 14 13 39 39 H 1.09002 * 109.46867 * 60.69825 * 19 18 16 40 40 H 1.08992 * 109.47647 * 180.70504 * 19 18 16 41 41 H 1.09002 * 109.46806 * 300.70423 * 19 18 16 42 42 H 1.09004 * 109.64546 * 266.65878 * 20 18 16 43 43 H 1.08997 * 109.64994 * 27.08742 * 20 18 16 44 44 H 1.08994 * 110.03071 * 72.10853 * 21 20 18 45 45 H 1.09003 * 110.02573 * 193.47965 * 21 20 18 46 46 H 1.08997 * 110.79356 * 160.70087 * 22 21 20 47 47 H 1.08997 * 110.79281 * 283.98036 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1903 1.4092 1.1846 6 1 3.7879 1.9060 2.0550 7 6 5.4020 0.7370 1.2671 8 7 5.6795 -0.2265 0.4145 9 14 6.6387 1.2000 2.5883 10 1 6.3143 0.4780 3.8449 11 1 8.0044 0.8258 2.1410 12 1 6.5806 2.6641 2.8296 13 6 4.2371 1.4779 -1.2691 14 6 4.4920 2.9322 -1.6704 15 7 5.2245 2.9676 -2.9386 16 6 5.5610 4.1506 -3.4896 17 8 5.2569 5.1859 -2.9358 18 6 6.3140 4.1871 -4.7944 19 6 5.3825 3.8307 -5.9547 20 6 6.9350 5.5807 -5.0153 21 6 8.2648 5.4142 -5.7715 22 6 9.0430 4.2802 -5.0558 23 16 7.7327 3.0336 -4.7415 24 8 7.8750 2.5223 -3.4234 25 8 7.6555 2.1413 -5.8447 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3632 0.5139 0.8901 28 1 -0.3633 0.5140 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.8932 -0.5138 -0.8900 31 1 1.6767 1.9563 -0.8899 32 1 1.6768 1.9563 0.8900 33 1 6.5264 -0.6959 0.4720 34 1 5.1895 0.9605 -1.1536 35 1 3.6477 0.9855 -2.0425 36 1 3.5396 3.4495 -1.7859 37 1 5.0814 3.4245 -0.8968 38 1 5.4668 2.1396 -3.3821 39 1 4.5698 4.5555 -6.0040 40 1 5.9428 3.8488 -6.8893 41 1 4.9710 2.8337 -5.7971 42 1 6.2540 6.1965 -5.6029 43 1 7.1205 6.0562 -4.0522 44 1 8.0726 5.1383 -6.8083 45 1 8.8354 6.3421 -5.7321 46 1 9.8166 3.8716 -5.7061 47 1 9.4746 4.6374 -4.1209 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481150812.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:52 Heat of formation + Delta-G solvation = -91.780225 kcal Electronic energy + Delta-G solvation = -28170.924315 eV Core-core repulsion = 24288.672033 eV Total energy + Delta-G solvation = -3882.252282 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -39.89822 -37.38073 -36.77777 -36.26723 -36.09288 -34.38947 -32.86691 -32.39770 -30.72413 -28.17624 -27.15389 -25.51403 -24.99613 -23.28239 -21.73101 -21.20336 -20.62566 -19.84125 -18.86992 -17.80820 -16.99428 -16.59381 -16.11110 -15.65347 -15.37180 -15.12917 -14.78726 -14.36670 -14.27551 -14.16949 -13.98134 -13.66133 -13.29592 -13.17651 -12.84319 -12.83237 -12.58964 -12.46203 -12.23646 -12.16388 -12.08463 -11.90733 -11.79131 -11.23304 -11.22806 -10.99174 -10.91031 -10.85243 -10.69307 -10.53409 -10.40229 -10.22704 -9.93196 -9.89809 -9.68364 -9.60505 -8.63155 -8.45020 -6.63339 -5.77541 -3.30951 -0.27915 2.18315 2.74704 3.12801 3.29110 3.41416 3.49732 3.52996 3.78565 4.03352 4.20734 4.32046 4.45332 4.53904 4.61278 4.80885 5.12118 5.20594 5.27690 5.28887 5.34935 5.45534 5.49607 5.56138 5.73356 5.77216 5.81878 5.85241 6.10001 6.16208 6.20308 6.30571 6.50765 6.53781 6.64513 6.70579 6.76515 7.04664 7.08518 7.28572 7.62566 7.74921 7.85390 8.31032 8.51292 9.18418 9.82721 10.37716 11.23393 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012942 B = 0.003909 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.990086 B = 7161.304437 C = 8223.439057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.140 4.140 3 C 0.148 3.852 4 N -0.579 5.579 5 C -0.263 4.263 6 H 0.064 0.936 7 C 0.013 3.987 8 N -0.883 5.883 9 Si 0.894 3.106 10 H -0.286 1.286 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.130 3.870 14 C 0.101 3.899 15 N -0.705 5.705 16 C 0.539 3.461 17 O -0.526 6.526 18 C -0.554 4.554 19 C -0.117 4.117 20 C -0.097 4.097 21 C -0.119 4.119 22 C -0.587 4.587 23 S 2.378 3.622 24 O -0.905 6.905 25 O -0.922 6.922 26 H 0.042 0.958 27 H 0.047 0.953 28 H 0.044 0.956 29 H 0.063 0.937 30 H 0.050 0.950 31 H 0.033 0.967 32 H 0.042 0.958 33 H 0.256 0.744 34 H 0.109 0.891 35 H 0.028 0.972 36 H 0.053 0.947 37 H 0.071 0.929 38 H 0.393 0.607 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.074 0.926 42 H 0.098 0.902 43 H 0.097 0.903 44 H 0.087 0.913 45 H 0.100 0.900 46 H 0.138 0.862 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.039 9.045 -15.782 18.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.180 4.180 3 C 0.022 3.978 4 N -0.299 5.299 5 C -0.393 4.393 6 H 0.081 0.919 7 C -0.188 4.188 8 N -0.525 5.525 9 Si 0.724 3.276 10 H -0.213 1.213 11 H -0.214 1.214 12 H -0.204 1.204 13 C 0.002 3.998 14 C -0.024 4.024 15 N -0.355 5.355 16 C 0.321 3.679 17 O -0.402 6.402 18 C -0.645 4.645 19 C -0.175 4.175 20 C -0.135 4.135 21 C -0.158 4.158 22 C -0.717 4.717 23 S 2.557 3.443 24 O -0.902 6.902 25 O -0.919 6.919 26 H 0.061 0.939 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.051 0.949 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.126 0.874 35 H 0.046 0.954 36 H 0.071 0.929 37 H 0.089 0.911 38 H 0.227 0.773 39 H 0.100 0.900 40 H 0.101 0.899 41 H 0.093 0.907 42 H 0.117 0.883 43 H 0.116 0.884 44 H 0.106 0.894 45 H 0.119 0.881 46 H 0.156 0.844 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 2.956 8.678 -15.176 17.730 hybrid contribution 0.847 0.562 0.295 1.059 sum 3.803 9.240 -14.881 17.925 Atomic orbital electron populations 1.21762 0.97826 1.00295 1.00655 1.22077 0.92962 1.00801 1.02137 1.20968 0.85080 0.93535 0.98264 1.43684 0.99415 1.84688 1.02095 1.19027 1.02981 1.27567 0.89697 0.91875 1.25066 1.00545 0.95108 0.98056 1.69946 1.23643 1.20236 1.38652 0.86456 0.81098 0.78678 0.81418 1.21251 1.21388 1.20382 1.21141 1.01048 0.90769 0.86808 1.22447 0.94532 1.03045 0.82369 1.46115 1.57015 1.06872 1.25504 1.18951 0.80336 0.84897 0.83721 1.90678 1.54488 1.32568 1.62501 1.30287 1.16042 1.15217 1.02986 1.21508 0.98728 1.03291 0.94020 1.21978 0.95286 0.92526 1.03736 1.22246 0.94626 0.99240 0.99650 1.30675 1.15110 1.14984 1.10980 1.09882 0.79887 0.78274 0.76208 1.93755 1.83799 1.76439 1.36185 1.93625 1.85084 1.59274 1.53936 0.93892 0.93418 0.93722 0.91819 0.93074 0.94855 0.93940 0.93388 0.87354 0.95354 0.92909 0.91076 0.77304 0.89951 0.89882 0.90738 0.88323 0.88412 0.89431 0.88116 0.84351 0.84108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 9.91 37.16 0.37 -1.92 16 2 C -0.14 -2.75 6.26 -26.73 -0.17 -2.92 16 3 C 0.15 3.09 5.67 -4.05 -0.02 3.07 16 4 N -0.58 -14.25 2.45 -173.24 -0.42 -14.67 16 5 C -0.26 -7.16 9.49 -15.06 -0.14 -7.31 16 6 H 0.06 1.72 7.93 -52.49 -0.42 1.30 16 7 C 0.01 0.35 4.94 -17.43 -0.09 0.27 16 8 N -0.88 -25.34 11.34 55.49 0.63 -24.71 16 9 Si 0.89 22.04 29.61 -169.99 -5.03 17.01 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 13 C 0.13 3.00 5.40 -4.04 -0.02 2.98 16 14 C 0.10 2.12 6.00 -4.04 -0.02 2.09 16 15 N -0.71 -12.63 4.73 -60.29 -0.29 -12.91 16 16 C 0.54 8.85 6.21 -10.99 -0.07 8.78 16 17 O -0.53 -10.17 15.74 5.55 0.09 -10.08 16 18 C -0.55 -6.36 0.96 -91.16 -0.09 -6.45 16 19 C -0.12 -1.09 7.88 37.16 0.29 -0.79 16 20 C -0.10 -0.85 5.12 -25.67 -0.13 -0.98 16 21 C -0.12 -0.73 6.48 -25.20 -0.16 -0.89 16 22 C -0.59 -4.45 7.32 38.24 0.28 -4.17 16 23 S 2.38 28.49 5.37 -107.50 -0.58 27.91 16 24 O -0.90 -15.20 16.08 -57.71 -0.93 -16.13 16 25 O -0.92 -12.38 17.21 -57.71 -0.99 -13.38 16 26 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 1.41 8.14 -51.93 -0.42 0.98 16 30 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.03 0.64 8.06 -51.93 -0.42 0.22 16 32 H 0.04 0.88 8.05 -51.93 -0.42 0.46 16 33 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 34 H 0.11 2.87 5.33 -51.92 -0.28 2.59 16 35 H 0.03 0.61 8.07 -51.93 -0.42 0.19 16 36 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.07 1.69 8.14 -51.93 -0.42 1.26 16 38 H 0.39 6.48 7.39 -40.82 -0.30 6.18 16 39 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.08 0.58 8.05 -51.93 -0.42 0.16 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.10 0.73 7.88 -51.93 -0.41 0.32 16 43 H 0.10 1.00 7.25 -51.93 -0.38 0.62 16 44 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 45 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.14 0.77 8.14 -51.93 -0.42 0.34 16 47 H 0.14 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 387.68 15.07 5.84 5.84 Total: -1.00 -34.84 387.68 -9.74 -44.58 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -8.09 Total: 4.78 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: 0.03 Total: -8.24 kcal Atomic # 7 Polarization: -52.22 SS G_CDS: -0.08 Total: -52.30 kcal Atomic # 8 Polarization: -37.76 SS G_CDS: -1.83 Total: -39.59 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.03 Total: 17.01 kcal Atomic # 16 Polarization: 28.49 SS G_CDS: -0.58 Total: 27.91 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.84 -9.74 -44.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481150812.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.198 kcal (2) G-P(sol) polarization free energy of solvation -34.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds