Wall clock time and date at job start Tue Mar 31 2020 16:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.47360 * 2 1 4 4 N 1.46498 * 109.47236 * 180.02562 * 3 2 1 5 5 C 1.36938 * 119.99895 * 271.59332 * 4 3 2 6 6 H 1.07999 * 120.00085 * 326.15821 * 5 4 3 7 7 C 1.38817 * 119.99825 * 146.15384 * 5 4 3 8 8 N 1.31620 * 119.99870 * 336.42615 * 7 5 4 9 9 Si 1.86796 * 119.99889 * 156.42696 * 7 5 4 10 10 H 1.48503 * 109.47311 * 84.96748 * 9 7 5 11 11 H 1.48500 * 109.47214 * 204.96759 * 9 7 5 12 12 H 1.48504 * 109.47194 * 324.96921 * 9 7 5 13 13 C 1.46495 * 120.00098 * 91.59574 * 4 3 2 14 14 C 1.53002 * 109.47373 * 90.00215 * 13 4 3 15 15 N 1.46502 * 109.47096 * 179.97438 * 14 13 4 16 16 C 1.34769 * 119.99797 * 179.97438 * 15 14 13 17 17 O 1.21283 * 120.00144 * 359.97438 * 16 15 14 18 18 C 1.50697 * 120.00024 * 180.02562 * 16 15 14 19 19 C 1.53000 * 110.28843 * 74.29814 * 18 16 15 20 20 C 1.54164 * 110.32040 * 196.41660 * 18 16 15 21 21 C 1.53875 * 108.70589 * 146.81175 * 20 18 16 22 22 C 1.55045 * 106.62394 * 312.81467 * 21 20 18 23 23 S 1.82928 * 110.31829 * 312.18324 * 18 16 15 24 24 O 1.42094 * 109.35098 * 352.37290 * 23 18 16 25 25 O 1.42097 * 109.35204 * 125.57474 * 23 18 16 26 26 H 1.08996 * 109.47423 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46327 * 299.99961 * 1 2 3 28 28 H 1.08999 * 109.46925 * 59.99217 * 1 2 3 29 29 H 1.08999 * 109.46695 * 120.00282 * 2 1 3 30 30 H 1.08997 * 109.46279 * 240.00206 * 2 1 3 31 31 H 1.09000 * 109.47309 * 300.00595 * 3 2 1 32 32 H 1.09004 * 109.47248 * 59.99914 * 3 2 1 33 33 H 0.96995 * 119.99462 * 179.97438 * 8 7 5 34 34 H 1.09007 * 109.46926 * 210.00319 * 13 4 3 35 35 H 1.08997 * 109.46912 * 329.99665 * 13 4 3 36 36 H 1.08996 * 109.46775 * 299.99884 * 14 13 4 37 37 H 1.09002 * 109.47083 * 59.99837 * 14 13 4 38 38 H 0.97002 * 120.00006 * 0.02562 * 15 14 13 39 39 H 1.09002 * 109.46867 * 60.69825 * 19 18 16 40 40 H 1.08992 * 109.47647 * 180.70504 * 19 18 16 41 41 H 1.09002 * 109.46806 * 300.70423 * 19 18 16 42 42 H 1.09004 * 109.64546 * 266.65878 * 20 18 16 43 43 H 1.08997 * 109.64994 * 27.08742 * 20 18 16 44 44 H 1.08994 * 110.03071 * 72.10853 * 21 20 18 45 45 H 1.09003 * 110.02573 * 193.47965 * 21 20 18 46 46 H 1.08997 * 110.79356 * 160.70087 * 22 21 20 47 47 H 1.08997 * 110.79281 * 283.98036 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1903 1.4092 1.1846 6 1 3.7879 1.9060 2.0550 7 6 5.4020 0.7370 1.2671 8 7 5.6795 -0.2265 0.4145 9 14 6.6387 1.2000 2.5883 10 1 6.3143 0.4780 3.8449 11 1 8.0044 0.8258 2.1410 12 1 6.5806 2.6641 2.8296 13 6 4.2371 1.4779 -1.2691 14 6 4.4920 2.9322 -1.6704 15 7 5.2245 2.9676 -2.9386 16 6 5.5610 4.1506 -3.4896 17 8 5.2569 5.1859 -2.9358 18 6 6.3140 4.1871 -4.7944 19 6 5.3825 3.8307 -5.9547 20 6 6.9350 5.5807 -5.0153 21 6 8.2648 5.4142 -5.7715 22 6 9.0430 4.2802 -5.0558 23 16 7.7327 3.0336 -4.7415 24 8 7.8750 2.5223 -3.4234 25 8 7.6555 2.1413 -5.8447 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3632 0.5139 0.8901 28 1 -0.3633 0.5140 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.8932 -0.5138 -0.8900 31 1 1.6767 1.9563 -0.8899 32 1 1.6768 1.9563 0.8900 33 1 6.5264 -0.6959 0.4720 34 1 5.1895 0.9605 -1.1536 35 1 3.6477 0.9855 -2.0425 36 1 3.5396 3.4495 -1.7859 37 1 5.0814 3.4245 -0.8968 38 1 5.4668 2.1396 -3.3821 39 1 4.5698 4.5555 -6.0040 40 1 5.9428 3.8488 -6.8893 41 1 4.9710 2.8337 -5.7971 42 1 6.2540 6.1965 -5.6029 43 1 7.1205 6.0562 -4.0522 44 1 8.0726 5.1383 -6.8083 45 1 8.8354 6.3421 -5.7321 46 1 9.8166 3.8716 -5.7061 47 1 9.4746 4.6374 -4.1209 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481150812.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:51 Heat of formation + Delta-G solvation = -117.288521 kcal Electronic energy + Delta-G solvation = -28172.030438 eV Core-core repulsion = 24288.672033 eV Total energy + Delta-G solvation = -3883.358405 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.19855 -38.44509 -38.25574 -37.41908 -37.11375 -35.92278 -34.58314 -33.38596 -32.51376 -29.82826 -27.84249 -27.34363 -26.09676 -24.76163 -23.15020 -22.42542 -21.79539 -21.53011 -20.01445 -19.01481 -18.41972 -17.86595 -17.19446 -16.98385 -16.89521 -16.53952 -16.19211 -15.91240 -15.64217 -15.49324 -15.08270 -14.80411 -14.67317 -14.33106 -14.21905 -14.03836 -13.66812 -13.58828 -13.52320 -13.26645 -13.15962 -13.05699 -12.89463 -12.73379 -12.61908 -12.53818 -12.43890 -12.19707 -12.06183 -11.87427 -11.82683 -11.77629 -11.74063 -11.35404 -11.29695 -10.93158 -10.56375 -10.18839 -8.67140 -7.87700 -5.44049 -1.16574 1.25350 1.40552 1.46003 1.51841 1.53337 1.85780 2.43588 2.49057 2.83585 3.21595 3.23758 3.39535 3.57282 3.68745 3.74814 3.90048 4.12740 4.25452 4.31267 4.33686 4.49156 4.51255 4.58541 4.63158 4.65286 4.67200 4.71850 4.81398 4.95237 4.99512 5.01838 5.05060 5.11629 5.18228 5.20681 5.23911 5.28871 5.45589 5.59885 5.63677 5.78219 6.28678 6.42925 6.93206 7.11700 7.81731 8.31581 9.09436 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012942 B = 0.003909 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.990086 B = 7161.304437 C = 8223.439057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.131 4.131 3 C 0.144 3.856 4 N -0.596 5.596 5 C -0.269 4.269 6 H 0.059 0.941 7 C -0.034 4.034 8 N -0.909 5.909 9 Si 0.947 3.053 10 H -0.276 1.276 11 H -0.294 1.294 12 H -0.277 1.277 13 C 0.136 3.864 14 C 0.121 3.879 15 N -0.711 5.711 16 C 0.536 3.464 17 O -0.559 6.559 18 C -0.543 4.543 19 C -0.122 4.122 20 C -0.099 4.099 21 C -0.113 4.113 22 C -0.556 4.556 23 S 2.355 3.645 24 O -0.970 6.970 25 O -0.944 6.944 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.031 0.969 30 H 0.037 0.963 31 H 0.054 0.946 32 H 0.044 0.956 33 H 0.251 0.749 34 H 0.076 0.924 35 H 0.042 0.958 36 H 0.058 0.942 37 H 0.036 0.964 38 H 0.399 0.601 39 H 0.090 0.910 40 H 0.114 0.886 41 H 0.065 0.935 42 H 0.119 0.881 43 H 0.079 0.921 44 H 0.116 0.884 45 H 0.132 0.868 46 H 0.170 0.830 47 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.301 10.992 -18.122 21.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.171 4.171 3 C 0.019 3.981 4 N -0.316 5.316 5 C -0.399 4.399 6 H 0.077 0.923 7 C -0.232 4.232 8 N -0.553 5.553 9 Si 0.775 3.225 10 H -0.202 1.202 11 H -0.220 1.220 12 H -0.203 1.203 13 C 0.008 3.992 14 C -0.005 4.005 15 N -0.361 5.361 16 C 0.320 3.680 17 O -0.437 6.437 18 C -0.635 4.635 19 C -0.180 4.180 20 C -0.137 4.137 21 C -0.152 4.152 22 C -0.690 4.690 23 S 2.541 3.459 24 O -0.967 6.967 25 O -0.941 6.941 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.050 0.950 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.094 0.906 35 H 0.060 0.940 36 H 0.077 0.923 37 H 0.054 0.946 38 H 0.233 0.767 39 H 0.109 0.891 40 H 0.133 0.867 41 H 0.084 0.916 42 H 0.137 0.863 43 H 0.098 0.902 44 H 0.135 0.865 45 H 0.150 0.850 46 H 0.188 0.812 47 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 3.175 10.588 -17.521 20.717 hybrid contribution 0.756 0.045 0.960 1.223 sum 3.932 10.633 -16.562 20.070 Atomic orbital electron populations 1.21661 0.94070 1.01709 1.02030 1.21917 0.96179 0.99126 0.99857 1.21120 0.83043 0.94618 0.99324 1.43913 1.01014 1.84945 1.01738 1.19229 1.03451 1.26713 0.90505 0.92290 1.25683 1.02018 0.95351 1.00101 1.70067 1.23619 1.21299 1.40299 0.85613 0.78832 0.78313 0.79706 1.20234 1.21980 1.20253 1.20966 0.99614 0.91725 0.86853 1.21908 0.94441 1.01066 0.83102 1.46060 1.57280 1.08135 1.24639 1.19732 0.79618 0.83559 0.85042 1.90653 1.55777 1.33381 1.63932 1.30237 1.15641 1.17216 1.00370 1.21676 0.99031 1.03069 0.94261 1.22122 0.97257 0.90572 1.03795 1.22419 0.92657 0.99798 1.00280 1.30539 1.13184 1.12793 1.12508 1.10276 0.81326 0.79585 0.74680 1.93681 1.84995 1.78898 1.39119 1.93587 1.85742 1.61254 1.53471 0.92512 0.92467 0.91886 0.95012 0.94445 0.92749 0.93747 0.93952 0.90603 0.93981 0.92321 0.94552 0.76659 0.89095 0.86702 0.91571 0.86267 0.90215 0.86531 0.84999 0.81191 0.83201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.99 9.91 71.98 0.71 -3.27 16 2 C -0.13 -5.16 6.26 30.60 0.19 -4.97 16 3 C 0.14 6.05 5.67 86.38 0.49 6.54 16 4 N -0.60 -30.19 2.45 -702.01 -1.72 -31.91 16 5 C -0.27 -15.10 9.49 84.03 0.80 -14.30 16 6 H 0.06 3.30 7.93 -2.91 -0.02 3.27 16 7 C -0.03 -1.93 4.94 84.86 0.42 -1.51 16 8 N -0.91 -54.45 11.34 21.65 0.25 -54.20 16 9 Si 0.95 46.70 29.61 68.60 2.03 48.74 16 10 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 11 H -0.29 -14.63 7.11 99.48 0.71 -13.92 16 12 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 13 C 0.14 6.55 5.40 86.38 0.47 7.02 16 14 C 0.12 5.31 6.00 86.38 0.52 5.83 16 15 N -0.71 -26.63 4.73 -463.07 -2.19 -28.82 16 16 C 0.54 17.93 6.21 87.66 0.54 18.47 16 17 O -0.56 -22.05 15.74 -3.04 -0.05 -22.10 16 18 C -0.54 -11.85 0.96 -11.15 -0.01 -11.86 16 19 C -0.12 -2.03 7.88 71.98 0.57 -1.46 16 20 C -0.10 -1.45 5.12 31.28 0.16 -1.29 16 21 C -0.11 -0.82 6.48 31.59 0.20 -0.62 16 22 C -0.56 -6.43 7.32 72.68 0.53 -5.89 16 23 S 2.36 55.18 5.37 -56.49 -0.30 54.88 16 24 O -0.97 -34.33 16.08 -127.49 -2.05 -36.38 16 25 O -0.94 -24.64 17.21 -127.49 -2.19 -26.83 16 26 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 28 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.03 1.42 8.14 -2.39 -0.02 1.41 16 30 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.05 2.04 8.06 -2.39 -0.02 2.02 16 32 H 0.04 1.83 8.05 -2.38 -0.02 1.81 16 33 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 34 H 0.08 4.26 5.33 -2.38 -0.01 4.24 16 35 H 0.04 1.86 8.07 -2.39 -0.02 1.84 16 36 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 37 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.40 14.01 7.39 -92.71 -0.69 13.33 16 39 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.11 1.18 8.05 -2.39 -0.02 1.16 16 41 H 0.07 1.20 8.14 -2.39 -0.02 1.19 16 42 H 0.12 1.30 7.88 -2.39 -0.02 1.28 16 43 H 0.08 1.51 7.25 -2.39 -0.02 1.49 16 44 H 0.12 0.29 8.14 -2.39 -0.02 0.27 16 45 H 0.13 0.35 8.14 -2.39 -0.02 0.33 16 46 H 0.17 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.15 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -80.68 387.68 -0.37 -81.05 By element: Atomic # 1 Polarization: 22.64 SS G_CDS: 0.26 Total: 22.91 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: 5.59 Total: -7.32 kcal Atomic # 7 Polarization: -111.27 SS G_CDS: -3.67 Total: -114.93 kcal Atomic # 8 Polarization: -81.02 SS G_CDS: -4.29 Total: -85.31 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.74 kcal Atomic # 16 Polarization: 55.18 SS G_CDS: -0.30 Total: 54.88 kcal Total: -80.68 -0.37 -81.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481150812.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.237 kcal (2) G-P(sol) polarization free energy of solvation -80.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds