Wall clock time and date at job start Tue Mar 31 2020 16:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47272 * 2 1 4 4 N 1.46501 * 109.46912 * 179.97438 * 3 2 1 5 5 C 1.36935 * 119.99974 * 270.31941 * 4 3 2 6 6 H 1.07996 * 120.00277 * 326.14687 * 5 4 3 7 7 C 1.38814 * 120.00079 * 146.14173 * 5 4 3 8 8 N 1.31618 * 120.00107 * 336.91079 * 7 5 4 9 9 Si 1.86801 * 119.99979 * 156.90425 * 7 5 4 10 10 H 1.48501 * 109.46966 * 60.00401 * 9 7 5 11 11 H 1.48504 * 109.47005 * 180.02562 * 9 7 5 12 12 H 1.48493 * 109.47215 * 300.00371 * 9 7 5 13 13 C 1.46504 * 119.99908 * 90.31963 * 4 3 2 14 14 C 1.52996 * 109.46804 * 89.99960 * 13 4 3 15 15 N 1.46501 * 109.47156 * 179.97438 * 14 13 4 16 16 C 1.34769 * 120.00352 * 179.97438 * 15 14 13 17 17 O 1.21284 * 120.00312 * 0.02562 * 16 15 14 18 18 C 1.50698 * 120.00454 * 180.02562 * 16 15 14 19 19 C 1.52998 * 110.28392 * 57.88373 * 18 16 15 20 20 C 1.54167 * 110.31681 * 295.66455 * 18 16 15 21 21 C 1.53883 * 108.70281 * 213.18511 * 20 18 16 22 22 C 1.55036 * 106.62218 * 47.18337 * 21 20 18 23 23 S 1.82912 * 110.32462 * 180.02562 * 18 16 15 24 24 O 1.42102 * 109.35480 * 234.42522 * 23 18 16 25 25 O 1.42102 * 109.35197 * 7.49335 * 23 18 16 26 26 H 1.08993 * 109.46924 * 300.00265 * 1 2 3 27 27 H 1.09001 * 109.46721 * 60.00134 * 1 2 3 28 28 H 1.09001 * 109.47028 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46679 * 239.99409 * 2 1 3 30 30 H 1.09002 * 109.46593 * 120.00406 * 2 1 3 31 31 H 1.09003 * 109.46891 * 59.99834 * 3 2 1 32 32 H 1.09001 * 109.47138 * 299.99610 * 3 2 1 33 33 H 0.96997 * 120.00437 * 180.02562 * 8 7 5 34 34 H 1.09002 * 109.47223 * 330.00066 * 13 4 3 35 35 H 1.09000 * 109.46842 * 209.99530 * 13 4 3 36 36 H 1.09002 * 109.47466 * 299.99781 * 14 13 4 37 37 H 1.09002 * 109.47144 * 60.00058 * 14 13 4 38 38 H 0.97008 * 119.99775 * 359.97438 * 15 14 13 39 39 H 1.08996 * 109.47216 * 60.70269 * 19 18 16 40 40 H 1.08997 * 109.47802 * 180.70476 * 19 18 16 41 41 H 1.09006 * 109.46935 * 300.70454 * 19 18 16 42 42 H 1.08997 * 109.64633 * 333.03712 * 20 18 16 43 43 H 1.09005 * 109.64760 * 93.33824 * 20 18 16 44 44 H 1.09002 * 110.02588 * 287.88697 * 21 20 18 45 45 H 1.09003 * 110.02101 * 166.47342 * 21 20 18 46 46 H 1.09006 * 110.78690 * 199.29515 * 22 21 20 47 47 H 1.08999 * 110.95804 * 75.90720 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1893 1.4359 1.1868 6 1 3.7863 1.9523 2.0455 7 6 5.4008 0.7655 1.2856 8 7 5.6828 -0.2108 0.4492 9 14 6.6309 1.2492 2.6056 10 1 6.0139 1.0744 3.9450 11 1 7.8358 0.3877 2.4989 12 1 7.0211 2.6701 2.4219 13 6 4.2381 1.4492 -1.2678 14 6 4.4933 2.8941 -1.7015 15 7 5.2269 2.9010 -2.9696 16 6 5.5638 4.0713 -3.5469 17 8 5.2601 5.1188 -3.0164 18 6 6.3178 4.0784 -4.8516 19 6 5.5311 3.3209 -5.9231 20 6 7.7141 3.4517 -4.6663 21 6 8.7018 4.1591 -5.6108 22 6 8.4639 5.6818 -5.4417 23 16 6.6359 5.7967 -5.3922 24 8 6.1396 5.9747 -6.7118 25 8 6.2454 6.6943 -4.3621 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6768 1.9563 -0.8900 33 1 6.5292 -0.6795 0.5185 34 1 3.6493 0.9396 -2.0305 35 1 5.1905 0.9347 -1.1398 36 1 3.5410 3.4087 -1.8294 37 1 5.0822 3.4037 -0.9388 38 1 5.4702 2.0632 -3.3938 39 1 4.5677 3.8066 -6.0779 40 1 6.0935 3.3235 -6.8568 41 1 5.3716 2.2928 -5.5979 42 1 8.0391 3.5794 -3.6338 43 1 7.6739 2.3893 -4.9071 44 1 8.5091 3.8633 -6.6421 45 1 9.7262 3.9085 -5.3353 46 1 8.8634 6.2327 -6.2932 47 1 8.8994 6.0433 -4.5102 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481150813.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:56 Heat of formation + Delta-G solvation = -92.158876 kcal Electronic energy + Delta-G solvation = -27864.591160 eV Core-core repulsion = 23982.322458 eV Total energy + Delta-G solvation = -3882.268702 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -39.86501 -37.26986 -36.73997 -36.38390 -35.88550 -34.34691 -32.90028 -32.38950 -30.78283 -28.11135 -27.20732 -25.59310 -24.96287 -23.27382 -21.91111 -21.43764 -20.37267 -19.89977 -18.73721 -17.60872 -16.83587 -16.66680 -16.10905 -15.57833 -15.25118 -15.15517 -14.83347 -14.49835 -14.29037 -14.07144 -14.00583 -13.71536 -13.25054 -13.12962 -12.92384 -12.80422 -12.61697 -12.44375 -12.14742 -12.12513 -11.96580 -11.95726 -11.75865 -11.31473 -11.27812 -11.04944 -10.92475 -10.81747 -10.79336 -10.53824 -10.34788 -10.30785 -10.01064 -9.98960 -9.71971 -9.51992 -8.64920 -8.53554 -6.72808 -5.88594 -3.41678 -0.12770 2.40709 2.67919 3.16767 3.33666 3.38219 3.43422 3.50871 3.90934 4.12327 4.28125 4.34001 4.42579 4.48931 4.62477 4.75495 5.13547 5.19976 5.23332 5.26817 5.33985 5.42720 5.43810 5.52262 5.62451 5.72463 5.79800 5.80689 6.04800 6.10825 6.13749 6.25849 6.47382 6.49558 6.59990 6.66311 6.77729 6.97343 7.02170 7.21759 7.51840 7.74433 7.76546 8.38387 8.42193 9.08535 9.72173 10.27564 11.11968 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013584 B = 0.003420 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.691475 B = 8186.257903 C = 9285.610128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.139 4.139 3 C 0.147 3.853 4 N -0.580 5.580 5 C -0.257 4.257 6 H 0.064 0.936 7 C 0.010 3.990 8 N -0.888 5.888 9 Si 0.896 3.104 10 H -0.281 1.281 11 H -0.291 1.291 12 H -0.282 1.282 13 C 0.133 3.867 14 C 0.097 3.903 15 N -0.706 5.706 16 C 0.529 3.471 17 O -0.506 6.506 18 C -0.561 4.561 19 C -0.120 4.120 20 C -0.107 4.107 21 C -0.116 4.116 22 C -0.598 4.598 23 S 2.408 3.592 24 O -0.933 6.933 25 O -0.890 6.890 26 H 0.047 0.953 27 H 0.044 0.956 28 H 0.042 0.958 29 H 0.050 0.950 30 H 0.063 0.937 31 H 0.044 0.956 32 H 0.034 0.966 33 H 0.255 0.745 34 H 0.028 0.972 35 H 0.106 0.894 36 H 0.052 0.948 37 H 0.068 0.932 38 H 0.398 0.602 39 H 0.073 0.927 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.090 0.910 43 H 0.101 0.899 44 H 0.088 0.912 45 H 0.099 0.901 46 H 0.136 0.864 47 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.812 3.804 -14.735 15.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.179 4.179 3 C 0.021 3.979 4 N -0.299 5.299 5 C -0.387 4.387 6 H 0.082 0.918 7 C -0.189 4.189 8 N -0.531 5.531 9 Si 0.725 3.275 10 H -0.206 1.206 11 H -0.216 1.216 12 H -0.208 1.208 13 C 0.006 3.994 14 C -0.028 4.028 15 N -0.357 5.357 16 C 0.310 3.690 17 O -0.381 6.381 18 C -0.652 4.652 19 C -0.178 4.178 20 C -0.146 4.146 21 C -0.154 4.154 22 C -0.727 4.727 23 S 2.586 3.414 24 O -0.930 6.930 25 O -0.887 6.887 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.062 0.938 32 H 0.052 0.948 33 H 0.065 0.935 34 H 0.046 0.954 35 H 0.123 0.877 36 H 0.070 0.930 37 H 0.086 0.914 38 H 0.232 0.768 39 H 0.092 0.908 40 H 0.100 0.900 41 H 0.099 0.901 42 H 0.109 0.891 43 H 0.120 0.880 44 H 0.107 0.893 45 H 0.118 0.882 46 H 0.155 0.845 47 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 4.077 5.174 -14.488 15.915 hybrid contribution 1.429 -1.002 0.642 1.860 sum 5.506 4.172 -13.846 15.474 Atomic orbital electron populations 1.21761 0.97748 1.00330 1.00746 1.22067 0.93064 1.00723 1.02035 1.20980 0.84959 0.93550 0.98431 1.43697 0.99511 1.84796 1.01946 1.19076 1.02808 1.26496 0.90289 0.91825 1.25048 1.00594 0.95126 0.98170 1.69956 1.23649 1.20024 1.39472 0.86475 0.80905 0.78265 0.81866 1.20650 1.21648 1.20834 1.21106 1.00798 0.90853 0.86692 1.22453 0.94931 1.02857 0.82598 1.45980 1.57249 1.07425 1.25000 1.19137 0.80317 0.85327 0.84183 1.90987 1.53513 1.30211 1.63423 1.30502 1.03959 1.26163 1.04546 1.21537 0.99875 1.00858 0.95548 1.22092 0.88042 1.02298 1.02130 1.22171 1.02156 0.89980 1.01135 1.30742 1.25779 1.04509 1.11654 1.09023 0.79245 0.77463 0.75646 1.93591 1.78043 1.84184 1.37225 1.93718 1.79474 1.58429 1.57049 0.93361 0.93670 0.93871 0.93138 0.91866 0.93797 0.94790 0.93536 0.95396 0.87668 0.92990 0.91356 0.76827 0.90827 0.90043 0.90061 0.89092 0.88012 0.89330 0.88218 0.84540 0.84285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 9.91 37.16 0.37 -1.86 16 2 C -0.14 -2.63 6.26 -26.73 -0.17 -2.80 16 3 C 0.15 2.99 5.67 -4.04 -0.02 2.96 16 4 N -0.58 -13.61 2.45 -173.24 -0.42 -14.04 16 5 C -0.26 -6.71 9.48 -15.06 -0.14 -6.86 16 6 H 0.06 1.68 7.93 -52.49 -0.42 1.26 16 7 C 0.01 0.27 4.95 -17.43 -0.09 0.19 16 8 N -0.89 -23.79 11.31 55.49 0.63 -23.16 16 9 Si 0.90 20.92 29.61 -169.99 -5.03 15.88 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 C 0.13 2.83 5.41 -4.04 -0.02 2.81 16 14 C 0.10 1.90 6.00 -4.04 -0.02 1.87 16 15 N -0.71 -11.04 5.42 -60.30 -0.33 -11.36 16 16 C 0.53 8.42 6.40 -10.99 -0.07 8.35 16 17 O -0.51 -10.42 13.97 -18.57 -0.26 -10.68 16 18 C -0.56 -6.23 0.93 -91.16 -0.08 -6.31 16 19 C -0.12 -1.08 7.78 37.16 0.29 -0.79 16 20 C -0.11 -0.86 5.44 -25.66 -0.14 -1.00 16 21 C -0.12 -0.69 6.48 -25.20 -0.16 -0.86 16 22 C -0.60 -4.44 7.30 38.23 0.28 -4.16 16 23 S 2.41 29.21 5.77 -107.50 -0.62 28.59 16 24 O -0.93 -12.76 17.24 -57.73 -1.00 -13.76 16 25 O -0.89 -15.39 15.27 -67.18 -1.03 -16.42 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.04 0.89 8.04 -51.93 -0.42 0.47 16 32 H 0.03 0.64 8.07 -51.93 -0.42 0.22 16 33 H 0.25 6.63 8.31 -40.82 -0.34 6.29 16 34 H 0.03 0.55 8.07 -51.93 -0.42 0.13 16 35 H 0.11 2.50 5.31 -51.93 -0.28 2.22 16 36 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 38 H 0.40 5.08 7.81 -40.82 -0.32 4.76 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.08 0.55 8.10 -51.93 -0.42 0.13 16 41 H 0.08 0.61 7.50 -51.93 -0.39 0.22 16 42 H 0.09 0.82 7.85 -51.93 -0.41 0.41 16 43 H 0.10 0.62 7.88 -51.93 -0.41 0.21 16 44 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.14 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.14 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 386.96 15.07 5.83 5.83 Total: -1.00 -34.66 386.96 -10.32 -44.98 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -8.10 Total: 2.59 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: 0.01 Total: -8.46 kcal Atomic # 7 Polarization: -48.44 SS G_CDS: -0.12 Total: -48.56 kcal Atomic # 8 Polarization: -38.58 SS G_CDS: -2.28 Total: -40.86 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.03 Total: 15.88 kcal Atomic # 16 Polarization: 29.21 SS G_CDS: -0.62 Total: 28.59 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.66 -10.32 -44.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481150813.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.181 kcal (2) G-P(sol) polarization free energy of solvation -34.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds