Wall clock time and date at job start Tue Mar 31 2020 16:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47581 * 2 1 4 4 N 1.46494 * 109.47373 * 179.97438 * 3 2 1 5 5 C 1.36940 * 119.99805 * 179.97438 * 4 3 2 6 6 H 1.07994 * 120.00121 * 0.02562 * 5 4 3 7 7 C 1.38816 * 119.99623 * 180.02562 * 5 4 3 8 8 N 1.31616 * 120.00357 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99833 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47332 * 59.99981 * 9 7 5 11 11 H 1.48502 * 109.47341 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47366 * 300.00146 * 9 7 5 13 13 N 1.46508 * 109.46920 * 119.99891 * 2 1 3 14 14 C 1.34775 * 119.99745 * 295.78201 * 13 2 1 15 15 O 1.21526 * 120.00463 * 4.99674 * 14 13 2 16 16 C 1.48009 * 119.99931 * 185.00821 * 14 13 2 17 17 C 1.39869 * 120.46559 * 179.97438 * 16 14 13 18 18 C 1.38442 * 118.35984 * 179.97438 * 17 16 14 19 19 C 1.39302 * 119.19012 * 0.02562 * 18 17 16 20 20 C 1.48338 * 119.57057 * 179.97438 * 19 18 17 21 21 N 1.34783 * 119.99603 * 179.97438 * 20 19 18 22 22 O 1.21487 * 120.00131 * 359.97438 * 20 19 18 23 23 N 1.32712 * 120.85698 * 359.97438 * 19 18 17 24 24 C 1.31414 * 121.80271 * 359.72991 * 23 19 18 25 25 C 1.52994 * 109.47155 * 239.99352 * 2 1 3 26 26 C 1.52995 * 117.50067 * 12.84610 * 25 2 1 27 27 C 1.52997 * 117.50452 * 304.18721 * 25 2 1 28 28 H 1.09005 * 109.46636 * 60.00263 * 1 2 3 29 29 H 1.08999 * 109.47322 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47017 * 300.00543 * 1 2 3 31 31 H 1.09000 * 109.46808 * 300.00269 * 3 2 1 32 32 H 1.09005 * 109.46956 * 59.99566 * 3 2 1 33 33 H 0.96996 * 119.99942 * 0.02562 * 4 3 2 34 34 H 0.97001 * 120.00342 * 179.97438 * 8 7 5 35 35 H 0.97002 * 119.99846 * 115.77541 * 13 2 1 36 36 H 1.08001 * 120.81468 * 359.94977 * 17 16 14 37 37 H 1.07994 * 120.40662 * 179.97438 * 18 17 16 38 38 H 0.96995 * 119.99830 * 359.97438 * 21 20 19 39 39 H 0.97004 * 119.99358 * 179.97438 * 21 20 19 40 40 H 1.07994 * 119.64617 * 180.26354 * 24 23 19 41 41 H 1.09007 * 115.54956 * 158.51576 * 25 2 1 42 42 H 1.09000 * 117.50034 * 359.97438 * 26 25 2 43 43 H 1.09001 * 117.50328 * 145.01383 * 26 25 2 44 44 H 1.09006 * 117.50027 * 214.98369 * 27 25 2 45 45 H 1.09000 * 117.49475 * 359.97438 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1898 2.6283 0.0002 6 1 3.6498 3.5636 -0.0002 7 6 5.5779 2.6282 0.0002 8 7 6.2360 1.4884 0.0002 9 14 6.5120 4.2459 0.0004 10 1 6.1532 5.0246 1.2130 11 1 7.9720 3.9745 -0.0002 12 1 6.1533 5.0248 -1.2120 13 7 2.0183 -0.6906 1.1963 14 6 1.7643 -0.1826 2.4185 15 8 1.0543 0.7969 2.5339 16 6 2.3501 -0.8177 3.6202 17 6 2.0934 -0.2983 4.8933 18 6 2.6632 -0.9269 5.9872 19 6 3.4673 -2.0463 5.7849 20 6 4.0826 -2.7261 6.9509 21 7 4.8616 -3.8102 6.7651 22 8 3.8844 -2.3057 8.0734 23 7 3.6899 -2.5125 4.5624 24 6 3.1629 -1.9478 3.4993 25 6 2.0400 -0.7214 -1.2491 26 6 1.0281 -1.0137 -2.3587 27 6 1.5566 -2.1537 -1.4847 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.6768 1.9562 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.9900 0.6023 0.0006 34 1 7.2060 1.4883 -0.0002 35 1 2.5244 -1.5135 1.1086 36 1 1.4663 0.5719 5.0196 37 1 2.4873 -0.5535 6.9852 38 1 5.0195 -4.1460 5.8689 39 1 5.2643 -4.2545 7.5276 40 1 3.3639 -2.3588 2.5210 41 1 3.0595 -0.4786 -1.5489 42 1 -0.0012 -0.6926 -2.1987 43 1 1.3817 -0.9636 -3.3885 44 1 2.2580 -2.8532 -1.9397 45 1 0.8755 -2.5823 -0.7495 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481952294.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:59 Heat of formation + Delta-G solvation = 9.125716 kcal Electronic energy + Delta-G solvation = -28730.268549 eV Core-core repulsion = 24749.240676 eV Total energy + Delta-G solvation = -3981.027873 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.99412 -40.03162 -38.87435 -37.67749 -34.73131 -34.07067 -33.66673 -32.54980 -32.10359 -30.81914 -29.58533 -26.07537 -25.54846 -23.81041 -23.63256 -22.44523 -22.10248 -21.61177 -20.40261 -18.99535 -18.51964 -17.85882 -17.29144 -17.15229 -16.24732 -15.80113 -15.35100 -15.30146 -15.10450 -14.82139 -14.72374 -14.46479 -14.14475 -13.69701 -13.51631 -13.29892 -13.15768 -12.89735 -12.59155 -12.39316 -12.15477 -11.97261 -11.46148 -11.12052 -10.93740 -10.81137 -10.77542 -10.67268 -10.26220 -10.13494 -10.10162 -10.01643 -9.95164 -9.87194 -9.68295 -9.44487 -9.39116 -8.80535 -8.70770 -6.86052 -5.75175 -3.01382 0.15215 1.01636 2.31410 3.05851 3.11152 3.24548 3.45625 3.49840 3.51106 3.80485 3.92878 4.02160 4.58784 4.60813 4.61592 4.72995 4.76226 4.84179 5.01290 5.03803 5.13442 5.29469 5.40104 5.43297 5.60422 5.62792 5.72873 5.78139 5.88571 5.92828 5.99340 6.15317 6.20381 6.23233 6.24980 6.38557 6.48290 6.48899 6.64255 6.83673 7.00934 7.04509 7.45933 7.72129 7.74499 7.97039 8.40249 8.44400 9.56038 10.13169 10.49028 11.47845 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.008627 B = 0.004050 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3244.830939 B = 6911.313304 C = 8822.034736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.203 3.797 3 C 0.141 3.859 4 N -0.726 5.726 5 C -0.232 4.232 6 H 0.068 0.932 7 C -0.014 4.014 8 N -0.936 5.936 9 Si 0.904 3.096 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.287 1.287 13 N -0.702 5.702 14 C 0.569 3.431 15 O -0.522 6.522 16 C -0.147 4.147 17 C -0.024 4.024 18 C -0.116 4.116 19 C 0.085 3.915 20 C 0.580 3.420 21 N -0.834 5.834 22 O -0.536 6.536 23 N -0.461 5.461 24 C 0.135 3.865 25 C -0.151 4.151 26 C -0.171 4.171 27 C -0.184 4.184 28 H 0.067 0.933 29 H 0.053 0.947 30 H 0.076 0.924 31 H 0.026 0.974 32 H 0.049 0.951 33 H 0.382 0.618 34 H 0.254 0.746 35 H 0.396 0.604 36 H 0.156 0.844 37 H 0.154 0.846 38 H 0.413 0.587 39 H 0.405 0.595 40 H 0.167 0.833 41 H 0.123 0.877 42 H 0.100 0.900 43 H 0.093 0.907 44 H 0.093 0.907 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.411 -13.825 4.867 17.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.117 3.883 3 C 0.013 3.987 4 N -0.370 5.370 5 C -0.363 4.363 6 H 0.086 0.914 7 C -0.209 4.209 8 N -0.585 5.585 9 Si 0.736 3.264 10 H -0.214 1.214 11 H -0.218 1.218 12 H -0.213 1.213 13 N -0.352 5.352 14 C 0.355 3.645 15 O -0.399 6.399 16 C -0.153 4.153 17 C -0.050 4.050 18 C -0.137 4.137 19 C -0.053 4.053 20 C 0.363 3.637 21 N -0.398 5.398 22 O -0.412 6.412 23 N -0.172 5.172 24 C -0.026 4.026 25 C -0.169 4.169 26 C -0.208 4.208 27 C -0.221 4.221 28 H 0.086 0.914 29 H 0.072 0.928 30 H 0.095 0.905 31 H 0.043 0.957 32 H 0.066 0.934 33 H 0.216 0.784 34 H 0.064 0.936 35 H 0.231 0.769 36 H 0.174 0.826 37 H 0.172 0.828 38 H 0.244 0.756 39 H 0.236 0.764 40 H 0.184 0.816 41 H 0.141 0.859 42 H 0.118 0.882 43 H 0.112 0.888 44 H 0.112 0.888 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -9.556 -13.263 5.513 17.251 hybrid contribution 0.999 0.629 -0.259 1.209 sum -8.557 -12.634 5.253 16.138 Atomic orbital electron populations 1.22285 0.94633 1.01670 1.03515 1.20084 0.93095 0.93306 0.81773 1.21090 0.86544 0.91467 0.99555 1.42222 0.99109 1.06185 1.89498 1.19182 0.88993 0.86190 1.41963 0.91402 1.24662 0.96287 0.96664 1.03334 1.69625 1.06726 1.23845 1.58344 0.86303 0.78939 0.83338 0.77852 1.21384 1.21777 1.21334 1.45832 1.56626 1.27699 1.05081 1.17784 0.80591 0.83520 0.82650 1.90718 1.37441 1.25583 1.86136 1.21355 1.00566 0.97878 0.95470 1.21794 0.95047 0.97937 0.90225 1.22098 0.95841 0.94707 1.01069 1.21176 0.97422 0.95046 0.91681 1.17892 0.78295 0.80225 0.87284 1.43632 1.51471 1.30885 1.13765 1.90827 1.61334 1.65207 1.23828 1.67468 1.20600 1.30997 0.98157 1.22924 0.91013 0.91269 0.97362 1.22574 1.00884 0.96987 0.96499 1.23057 0.99275 1.02614 0.95899 1.22973 1.04045 0.91525 1.03607 0.91425 0.92843 0.90472 0.95660 0.93371 0.78434 0.93648 0.76881 0.82590 0.82815 0.75613 0.76418 0.81596 0.85860 0.88219 0.88824 0.88830 0.88982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.18 7.10 37.16 0.26 -1.92 16 2 C 0.20 3.11 0.54 -131.82 -0.07 3.04 16 3 C 0.14 2.89 4.90 -4.05 -0.02 2.87 16 4 N -0.73 -17.78 5.04 -59.91 -0.30 -18.08 16 5 C -0.23 -6.49 9.99 -15.06 -0.15 -6.64 16 6 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 7 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 8 N -0.94 -27.71 13.06 55.49 0.72 -26.98 16 9 Si 0.90 22.67 29.55 -169.99 -5.02 17.65 16 10 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 11 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 12 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 13 N -0.70 -10.09 4.69 -48.49 -0.23 -10.32 16 14 C 0.57 9.09 7.19 -12.26 -0.09 9.00 16 15 O -0.52 -9.78 12.64 5.34 0.07 -9.71 16 16 C -0.15 -2.05 5.90 -104.72 -0.62 -2.67 16 17 C -0.02 -0.31 9.71 -38.90 -0.38 -0.69 16 18 C -0.12 -1.43 9.62 -39.11 -0.38 -1.81 16 19 C 0.08 1.07 6.75 -82.93 -0.56 0.51 16 20 C 0.58 7.09 8.09 -12.10 -0.10 6.99 16 21 N -0.83 -7.04 8.86 30.64 0.27 -6.77 16 22 O -0.54 -8.03 17.15 5.38 0.09 -7.94 16 23 N -0.46 -5.64 9.52 -9.48 -0.09 -5.73 16 24 C 0.14 1.66 10.71 -17.17 -0.18 1.48 16 25 C -0.15 -2.11 4.86 -90.63 -0.44 -2.55 16 26 C -0.17 -1.97 9.64 -26.70 -0.26 -2.23 16 27 C -0.18 -1.97 9.72 -26.70 -0.26 -2.23 16 28 H 0.07 0.84 6.78 -51.93 -0.35 0.49 16 29 H 0.05 0.62 6.99 -51.93 -0.36 0.25 16 30 H 0.08 1.17 6.31 -51.93 -0.33 0.84 16 31 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.05 1.10 6.04 -51.93 -0.31 0.78 16 33 H 0.38 9.55 6.62 -40.82 -0.27 9.28 16 34 H 0.25 7.35 8.31 -40.82 -0.34 7.02 16 35 H 0.40 4.76 6.45 -40.82 -0.26 4.50 16 36 H 0.16 1.92 7.73 -52.49 -0.41 1.52 16 37 H 0.15 1.69 7.63 -52.49 -0.40 1.29 16 38 H 0.41 2.97 8.15 -40.82 -0.33 2.64 16 39 H 0.40 2.58 8.93 -40.82 -0.36 2.22 16 40 H 0.17 1.63 6.42 -52.49 -0.34 1.30 16 41 H 0.12 2.12 7.09 -51.92 -0.37 1.75 16 42 H 0.10 1.06 5.88 -51.93 -0.31 0.75 16 43 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 44 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.09 0.89 7.34 -51.93 -0.38 0.51 16 LS Contribution 370.97 15.07 5.59 5.59 Total: -1.00 -34.36 370.97 -7.83 -42.18 By element: Atomic # 1 Polarization: 23.05 SS G_CDS: -5.60 Total: 17.45 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: -3.33 Total: 2.66 kcal Atomic # 7 Polarization: -68.26 SS G_CDS: 0.38 Total: -67.89 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: 0.16 Total: -17.65 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.36 -7.83 -42.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481952294.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.309 kcal (2) G-P(sol) polarization free energy of solvation -34.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds