Wall clock time and date at job start Tue Mar 31 2020 16:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47581 * 2 1 4 4 N 1.46494 * 109.47373 * 179.97438 * 3 2 1 5 5 C 1.36940 * 119.99805 * 179.97438 * 4 3 2 6 6 H 1.07994 * 120.00121 * 0.02562 * 5 4 3 7 7 C 1.38816 * 119.99623 * 180.02562 * 5 4 3 8 8 N 1.31616 * 120.00357 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99833 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47332 * 59.99981 * 9 7 5 11 11 H 1.48502 * 109.47341 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47366 * 300.00146 * 9 7 5 13 13 N 1.46508 * 109.46920 * 119.99891 * 2 1 3 14 14 C 1.34775 * 119.99745 * 295.78201 * 13 2 1 15 15 O 1.21526 * 120.00463 * 4.99674 * 14 13 2 16 16 C 1.48009 * 119.99931 * 185.00821 * 14 13 2 17 17 C 1.39869 * 120.46559 * 179.97438 * 16 14 13 18 18 C 1.38442 * 118.35984 * 179.97438 * 17 16 14 19 19 C 1.39302 * 119.19012 * 0.02562 * 18 17 16 20 20 C 1.48338 * 119.57057 * 179.97438 * 19 18 17 21 21 N 1.34783 * 119.99603 * 179.97438 * 20 19 18 22 22 O 1.21487 * 120.00131 * 359.97438 * 20 19 18 23 23 N 1.32712 * 120.85698 * 359.97438 * 19 18 17 24 24 C 1.31414 * 121.80271 * 359.72991 * 23 19 18 25 25 C 1.52994 * 109.47155 * 239.99352 * 2 1 3 26 26 C 1.52995 * 117.50067 * 12.84610 * 25 2 1 27 27 C 1.52997 * 117.50452 * 304.18721 * 25 2 1 28 28 H 1.09005 * 109.46636 * 60.00263 * 1 2 3 29 29 H 1.08999 * 109.47322 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47017 * 300.00543 * 1 2 3 31 31 H 1.09000 * 109.46808 * 300.00269 * 3 2 1 32 32 H 1.09005 * 109.46956 * 59.99566 * 3 2 1 33 33 H 0.96996 * 119.99942 * 0.02562 * 4 3 2 34 34 H 0.97001 * 120.00342 * 179.97438 * 8 7 5 35 35 H 0.97002 * 119.99846 * 115.77541 * 13 2 1 36 36 H 1.08001 * 120.81468 * 359.94977 * 17 16 14 37 37 H 1.07994 * 120.40662 * 179.97438 * 18 17 16 38 38 H 0.96995 * 119.99830 * 359.97438 * 21 20 19 39 39 H 0.97004 * 119.99358 * 179.97438 * 21 20 19 40 40 H 1.07994 * 119.64617 * 180.26354 * 24 23 19 41 41 H 1.09007 * 115.54956 * 158.51576 * 25 2 1 42 42 H 1.09000 * 117.50034 * 359.97438 * 26 25 2 43 43 H 1.09001 * 117.50328 * 145.01383 * 26 25 2 44 44 H 1.09006 * 117.50027 * 214.98369 * 27 25 2 45 45 H 1.09000 * 117.49475 * 359.97438 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1898 2.6283 0.0002 6 1 3.6498 3.5636 -0.0002 7 6 5.5779 2.6282 0.0002 8 7 6.2360 1.4884 0.0002 9 14 6.5120 4.2459 0.0004 10 1 6.1532 5.0246 1.2130 11 1 7.9720 3.9745 -0.0002 12 1 6.1533 5.0248 -1.2120 13 7 2.0183 -0.6906 1.1963 14 6 1.7643 -0.1826 2.4185 15 8 1.0543 0.7969 2.5339 16 6 2.3501 -0.8177 3.6202 17 6 2.0934 -0.2983 4.8933 18 6 2.6632 -0.9269 5.9872 19 6 3.4673 -2.0463 5.7849 20 6 4.0826 -2.7261 6.9509 21 7 4.8616 -3.8102 6.7651 22 8 3.8844 -2.3057 8.0734 23 7 3.6899 -2.5125 4.5624 24 6 3.1629 -1.9478 3.4993 25 6 2.0400 -0.7214 -1.2491 26 6 1.0281 -1.0137 -2.3587 27 6 1.5566 -2.1537 -1.4847 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.6768 1.9562 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.9900 0.6023 0.0006 34 1 7.2060 1.4883 -0.0002 35 1 2.5244 -1.5135 1.1086 36 1 1.4663 0.5719 5.0196 37 1 2.4873 -0.5535 6.9852 38 1 5.0195 -4.1460 5.8689 39 1 5.2643 -4.2545 7.5276 40 1 3.3639 -2.3588 2.5210 41 1 3.0595 -0.4786 -1.5489 42 1 -0.0012 -0.6926 -2.1987 43 1 1.3817 -0.9636 -3.3885 44 1 2.2580 -2.8532 -1.9397 45 1 0.8755 -2.5823 -0.7495 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481952294.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:58 Heat of formation + Delta-G solvation = -17.480466 kcal Electronic energy + Delta-G solvation = -28731.422280 eV Core-core repulsion = 24749.240676 eV Total energy + Delta-G solvation = -3982.181603 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.06431 -41.16917 -39.89231 -38.83306 -36.35245 -35.13659 -34.98531 -33.60875 -33.40167 -32.42471 -30.92544 -27.58760 -26.79016 -25.06738 -24.76184 -24.11854 -23.11626 -22.60704 -21.48944 -20.26427 -19.48557 -19.21941 -18.90898 -18.22254 -17.26595 -16.86664 -16.78273 -16.38823 -16.28634 -16.13443 -15.92230 -15.86327 -15.38876 -15.06443 -14.92822 -14.54342 -14.32361 -14.16199 -13.77941 -13.75061 -13.66211 -13.16594 -13.06297 -12.78318 -12.47432 -12.25686 -12.07277 -11.99817 -11.76933 -11.68365 -11.29826 -11.13343 -11.07585 -11.01148 -10.87741 -10.80629 -10.55692 -10.41907 -9.97917 -8.92400 -7.94682 -5.19810 -0.89100 0.02025 1.28225 1.44411 1.46310 1.52198 1.91272 2.10882 2.23193 2.55227 2.75476 2.99738 3.05150 3.38285 3.54896 3.64542 3.67363 3.78026 3.81999 3.92940 3.97714 4.01843 4.20298 4.27436 4.48660 4.49869 4.62630 4.79391 4.81870 4.87098 4.91843 4.92725 5.02051 5.07008 5.16455 5.26108 5.31671 5.37059 5.47165 5.50767 5.63192 5.73898 6.16854 6.28093 6.50193 6.57311 7.15016 7.20575 7.36143 8.11118 8.39504 9.27838 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.008627 B = 0.004050 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3244.830939 B = 6911.313304 C = 8822.034736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.212 3.788 3 C 0.142 3.858 4 N -0.728 5.728 5 C -0.243 4.243 6 H 0.062 0.938 7 C -0.066 4.066 8 N -0.961 5.961 9 Si 0.963 3.037 10 H -0.286 1.286 11 H -0.292 1.292 12 H -0.279 1.279 13 N -0.693 5.693 14 C 0.565 3.435 15 O -0.557 6.557 16 C -0.164 4.164 17 C -0.027 4.027 18 C -0.117 4.117 19 C 0.080 3.920 20 C 0.578 3.422 21 N -0.812 5.812 22 O -0.568 6.568 23 N -0.456 5.456 24 C 0.139 3.861 25 C -0.176 4.176 26 C -0.164 4.164 27 C -0.155 4.155 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.056 0.944 31 H 0.020 0.980 32 H 0.024 0.976 33 H 0.378 0.622 34 H 0.250 0.750 35 H 0.408 0.592 36 H 0.157 0.843 37 H 0.164 0.836 38 H 0.422 0.578 39 H 0.417 0.583 40 H 0.191 0.809 41 H 0.087 0.913 42 H 0.113 0.887 43 H 0.097 0.903 44 H 0.105 0.895 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.749 -15.561 4.368 18.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.126 3.874 3 C 0.015 3.985 4 N -0.371 5.371 5 C -0.375 4.375 6 H 0.080 0.920 7 C -0.258 4.258 8 N -0.612 5.612 9 Si 0.793 3.207 10 H -0.213 1.213 11 H -0.218 1.218 12 H -0.205 1.205 13 N -0.344 5.344 14 C 0.351 3.649 15 O -0.436 6.436 16 C -0.169 4.169 17 C -0.053 4.053 18 C -0.138 4.138 19 C -0.058 4.058 20 C 0.361 3.639 21 N -0.376 5.376 22 O -0.447 6.447 23 N -0.167 5.167 24 C -0.022 4.022 25 C -0.195 4.195 26 C -0.201 4.201 27 C -0.192 4.192 28 H 0.096 0.904 29 H 0.099 0.901 30 H 0.075 0.925 31 H 0.038 0.962 32 H 0.042 0.958 33 H 0.211 0.789 34 H 0.059 0.941 35 H 0.246 0.754 36 H 0.175 0.825 37 H 0.182 0.818 38 H 0.254 0.746 39 H 0.250 0.750 40 H 0.207 0.793 41 H 0.106 0.894 42 H 0.131 0.869 43 H 0.116 0.884 44 H 0.124 0.876 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -9.891 -15.050 4.988 18.687 hybrid contribution 1.094 1.156 -0.114 1.596 sum -8.797 -13.894 4.874 17.152 Atomic orbital electron populations 1.22212 0.92691 1.03257 1.03051 1.19883 0.94303 0.90357 0.82832 1.21129 0.84289 0.95256 0.97864 1.42270 1.00711 1.05004 1.89137 1.19486 0.89613 0.87243 1.41184 0.91956 1.25343 0.97041 0.99592 1.03865 1.69752 1.06529 1.25389 1.59500 0.85374 0.77470 0.79997 0.77906 1.21281 1.21789 1.20489 1.45783 1.56299 1.27870 1.04476 1.18130 0.80124 0.83139 0.83503 1.90700 1.39082 1.27147 1.86701 1.21309 1.01812 0.98940 0.94873 1.21888 0.95068 0.98037 0.90337 1.22208 0.95649 0.94655 1.01296 1.21404 0.97228 0.95091 0.92113 1.17873 0.78654 0.80856 0.86565 1.43497 1.49784 1.29407 1.14877 1.90815 1.62776 1.66357 1.24772 1.67534 1.20441 1.30795 0.97963 1.23265 0.90037 0.90524 0.98370 1.22248 0.99856 1.00340 0.97055 1.23186 0.99075 1.02418 0.95469 1.23075 1.03381 0.89853 1.02873 0.90397 0.90116 0.92464 0.96240 0.95831 0.78860 0.94070 0.75436 0.82517 0.81805 0.74582 0.74964 0.79259 0.89440 0.86910 0.88446 0.87646 0.87117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.89 7.10 71.98 0.51 -3.38 16 2 C 0.21 6.39 0.54 3.60 0.00 6.39 16 3 C 0.14 5.95 4.90 86.38 0.42 6.37 16 4 N -0.73 -36.50 5.04 -343.47 -1.73 -38.23 16 5 C -0.24 -13.86 9.99 84.03 0.84 -13.02 16 6 H 0.06 3.54 7.83 -2.91 -0.02 3.52 16 7 C -0.07 -3.78 5.50 84.86 0.47 -3.31 16 8 N -0.96 -57.40 13.06 21.65 0.28 -57.12 16 9 Si 0.96 46.93 29.55 68.60 2.03 48.95 16 10 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 11 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 12 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 13 N -0.69 -19.49 4.69 -425.61 -1.99 -21.49 16 14 C 0.56 18.11 7.19 86.84 0.62 18.73 16 15 O -0.56 -21.45 12.64 -3.80 -0.05 -21.50 16 16 C -0.16 -4.52 5.90 -19.93 -0.12 -4.64 16 17 C -0.03 -0.70 9.71 22.71 0.22 -0.48 16 18 C -0.12 -2.85 9.62 22.57 0.22 -2.63 16 19 C 0.08 1.93 6.75 41.96 0.28 2.22 16 20 C 0.58 13.45 8.09 86.93 0.70 14.15 16 21 N -0.81 -12.20 8.86 -175.26 -1.55 -13.75 16 22 O -0.57 -16.66 17.15 -3.68 -0.06 -16.73 16 23 N -0.46 -10.46 9.52 -183.91 -1.75 -12.21 16 24 C 0.14 3.23 10.71 85.12 0.91 4.14 16 25 C -0.18 -4.73 4.86 -10.80 -0.05 -4.78 16 26 C -0.16 -3.36 9.64 30.61 0.30 -3.07 16 27 C -0.15 -2.81 9.72 30.61 0.30 -2.52 16 28 H 0.08 1.79 6.78 -2.38 -0.02 1.78 16 29 H 0.08 1.61 6.99 -2.39 -0.02 1.59 16 30 H 0.06 1.71 6.31 -2.39 -0.02 1.70 16 31 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.02 1.12 6.04 -2.38 -0.01 1.11 16 33 H 0.38 19.33 6.62 -92.71 -0.61 18.72 16 34 H 0.25 14.61 8.31 -92.71 -0.77 13.83 16 35 H 0.41 9.22 6.45 -92.71 -0.60 8.63 16 36 H 0.16 3.99 7.73 -2.91 -0.02 3.97 16 37 H 0.16 3.58 7.63 -2.91 -0.02 3.56 16 38 H 0.42 5.12 8.15 -92.71 -0.76 4.36 16 39 H 0.42 4.49 8.93 -92.70 -0.83 3.67 16 40 H 0.19 3.34 6.42 -2.91 -0.02 3.32 16 41 H 0.09 3.04 7.09 -2.38 -0.02 3.02 16 42 H 0.11 2.03 5.88 -2.39 -0.01 2.01 16 43 H 0.10 1.93 8.14 -2.39 -0.02 1.92 16 44 H 0.11 1.72 8.14 -2.38 -0.02 1.70 16 45 H 0.11 1.65 7.34 -2.39 -0.02 1.63 16 Total: -1.00 -75.10 370.97 -0.90 -76.00 By element: Atomic # 1 Polarization: 43.62 SS G_CDS: -1.70 Total: 41.92 kcal Atomic # 6 Polarization: 8.53 SS G_CDS: 5.63 Total: 14.15 kcal Atomic # 7 Polarization: -136.06 SS G_CDS: -6.75 Total: -142.80 kcal Atomic # 8 Polarization: -38.11 SS G_CDS: -0.11 Total: -38.22 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.95 kcal Total: -75.10 -0.90 -76.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481952294.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.522 kcal (2) G-P(sol) polarization free energy of solvation -75.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds