Wall clock time and date at job start Tue Mar 31 2020 16:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.46759 * 2 1 4 4 N 1.46495 * 109.47109 * 299.99873 * 3 2 1 5 5 C 1.36943 * 119.99921 * 180.02562 * 4 3 2 6 6 H 1.07999 * 119.99775 * 0.02562 * 5 4 3 7 7 C 1.38808 * 120.00198 * 180.02562 * 5 4 3 8 8 N 1.31625 * 119.99965 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00253 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.46922 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47723 * 119.99957 * 9 7 5 12 12 H 1.48505 * 109.47176 * 239.99806 * 9 7 5 13 13 N 1.46497 * 109.46982 * 240.00455 * 2 1 3 14 14 C 1.34784 * 119.99896 * 175.39559 * 13 2 1 15 15 O 1.21531 * 119.99606 * 355.81229 * 14 13 2 16 16 C 1.48001 * 120.00195 * 175.54271 * 14 13 2 17 17 C 1.39863 * 120.46336 * 180.27410 * 16 14 13 18 18 C 1.38455 * 118.35815 * 179.97438 * 17 16 14 19 19 C 1.39304 * 119.18994 * 0.02562 * 18 17 16 20 20 C 1.48335 * 119.57248 * 179.97438 * 19 18 17 21 21 N 1.34774 * 120.00190 * 180.02562 * 20 19 18 22 22 O 1.21495 * 119.99886 * 359.97438 * 20 19 18 23 23 N 1.32719 * 120.85546 * 0.02562 * 19 18 17 24 24 C 1.31416 * 121.80050 * 359.72250 * 23 19 18 25 25 C 1.52995 * 109.47266 * 120.00024 * 2 1 3 26 26 C 1.53000 * 117.49956 * 121.75836 * 25 2 1 27 27 C 1.52997 * 117.49850 * 53.13572 * 25 2 1 28 28 H 1.09002 * 109.46883 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47294 * 299.99796 * 1 2 3 30 30 H 1.09004 * 109.46861 * 59.99860 * 1 2 3 31 31 H 1.08997 * 109.47051 * 60.00055 * 3 2 1 32 32 H 1.09001 * 109.47060 * 179.97438 * 3 2 1 33 33 H 0.96996 * 120.00577 * 0.02562 * 4 3 2 34 34 H 0.97001 * 120.00082 * 179.97438 * 8 7 5 35 35 H 0.96995 * 120.00510 * 355.38835 * 13 2 1 36 36 H 1.07999 * 120.82691 * 359.97438 * 17 16 14 37 37 H 1.08003 * 120.40674 * 179.97438 * 18 17 16 38 38 H 0.96997 * 120.00063 * 359.97438 * 21 20 19 39 39 H 0.96997 * 120.00256 * 180.02562 * 21 20 19 40 40 H 1.07999 * 119.63606 * 180.26603 * 24 23 19 41 41 H 1.09006 * 115.55196 * 267.46971 * 25 2 1 42 42 H 1.09001 * 117.49725 * 0.02562 * 26 25 2 43 43 H 1.08998 * 117.49574 * 145.02034 * 26 25 2 44 44 H 1.08999 * 117.50234 * 214.97734 * 27 25 2 45 45 H 1.08998 * 117.49893 * 0.02562 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 1.5516 2.1331 -1.1961 5 6 1.8828 3.4441 -1.4131 6 1 2.5044 3.9687 -0.7026 7 6 1.4197 4.0986 -2.5462 8 7 0.6626 3.4590 -3.4124 9 14 1.8721 5.8865 -2.8425 10 1 2.7266 6.3720 -1.7293 11 1 2.6136 6.0039 -4.1238 12 1 0.6351 6.7055 -2.9098 13 7 2.0183 -0.6905 -1.1962 14 6 3.3399 -0.7331 -1.4574 15 8 4.1201 -0.1348 -0.7430 16 6 3.8416 -1.5133 -2.6108 17 6 5.2114 -1.5688 -2.8873 18 6 5.6328 -2.3121 -3.9768 19 6 4.6857 -2.9738 -4.7550 20 6 5.1276 -3.7721 -5.9246 21 7 4.2186 -4.4154 -6.6837 22 8 6.3090 -3.8451 -6.1987 23 7 3.3929 -2.8986 -4.4642 24 6 2.9535 -2.2078 -3.4362 25 6 2.0401 -0.7212 1.2492 26 6 2.9490 -1.9345 1.0428 27 6 1.5080 -2.1303 1.5181 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 3.1300 1.4426 0.0005 33 1 0.9937 1.6619 -1.8345 34 1 0.3387 3.9165 -4.2040 35 1 1.3907 -1.1171 -1.8002 36 1 5.9231 -1.0449 -2.2665 37 1 6.6828 -2.3773 -4.2209 38 1 3.2754 -4.3568 -6.4651 39 1 4.5077 -4.9377 -7.4483 40 1 1.8941 -2.1739 -3.2291 41 1 2.2377 -0.0848 2.1118 42 1 3.1840 -2.2187 0.0171 43 1 3.7451 -2.0964 1.7696 44 1 1.3560 -2.4210 2.5576 45 1 0.7949 -2.5436 0.8049 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481952295.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:02 Heat of formation + Delta-G solvation = 16.412116 kcal Electronic energy + Delta-G solvation = -28923.496757 eV Core-core repulsion = 24942.784846 eV Total energy + Delta-G solvation = -3980.711911 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.11112 -40.18986 -38.88235 -37.17983 -35.02156 -34.11057 -33.57070 -32.57511 -32.17110 -30.88620 -29.52155 -26.17422 -25.61632 -23.85691 -23.72498 -22.20684 -21.97159 -21.36254 -20.71363 -19.17175 -18.59509 -17.82211 -17.34759 -17.23965 -16.36512 -15.86614 -15.40245 -15.33679 -15.23482 -14.78132 -14.48981 -14.34060 -13.94909 -13.85510 -13.44009 -13.34326 -13.29537 -12.90530 -12.73909 -12.20885 -12.11738 -11.94726 -11.39961 -11.14308 -10.91195 -10.82257 -10.80115 -10.71413 -10.27396 -10.17912 -10.14076 -10.02239 -9.99070 -9.83707 -9.68157 -9.43599 -9.40046 -8.77452 -8.69740 -6.83084 -5.74268 -2.99966 0.10992 0.96589 2.28314 3.06526 3.11951 3.23518 3.45100 3.51547 3.53302 3.76519 3.87504 3.95480 4.54010 4.56642 4.60016 4.71850 4.78726 4.80720 4.97024 5.04898 5.08893 5.36431 5.38107 5.48823 5.62052 5.65142 5.71214 5.74084 5.83987 5.92645 5.99713 6.10032 6.19650 6.20968 6.23788 6.31710 6.44622 6.53802 6.59422 6.86330 6.96775 7.12113 7.40782 7.72343 7.75823 7.93076 8.43177 8.45780 9.57196 10.14923 10.50227 11.49128 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.009121 B = 0.004019 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3069.078651 B = 6964.855520 C = 9001.928069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.201 3.799 3 C 0.139 3.861 4 N -0.726 5.726 5 C -0.228 4.228 6 H 0.069 0.931 7 C -0.016 4.016 8 N -0.937 5.937 9 Si 0.904 3.096 10 H -0.281 1.281 11 H -0.293 1.293 12 H -0.293 1.293 13 N -0.708 5.708 14 C 0.568 3.432 15 O -0.509 6.509 16 C -0.149 4.149 17 C -0.023 4.023 18 C -0.115 4.115 19 C 0.085 3.915 20 C 0.580 3.420 21 N -0.834 5.834 22 O -0.535 6.535 23 N -0.461 5.461 24 C 0.132 3.868 25 C -0.143 4.143 26 C -0.165 4.165 27 C -0.182 4.182 28 H 0.053 0.947 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.022 0.978 32 H 0.057 0.943 33 H 0.381 0.619 34 H 0.252 0.748 35 H 0.395 0.605 36 H 0.157 0.843 37 H 0.155 0.845 38 H 0.413 0.587 39 H 0.405 0.595 40 H 0.166 0.834 41 H 0.110 0.890 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.802 -18.736 1.981 18.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.115 3.885 3 C 0.011 3.989 4 N -0.370 5.370 5 C -0.359 4.359 6 H 0.087 0.913 7 C -0.211 4.211 8 N -0.587 5.587 9 Si 0.736 3.264 10 H -0.206 1.206 11 H -0.220 1.220 12 H -0.220 1.220 13 N -0.359 5.359 14 C 0.354 3.646 15 O -0.384 6.384 16 C -0.155 4.155 17 C -0.050 4.050 18 C -0.136 4.136 19 C -0.053 4.053 20 C 0.363 3.637 21 N -0.398 5.398 22 O -0.411 6.411 23 N -0.172 5.172 24 C -0.029 4.029 25 C -0.163 4.163 26 C -0.202 4.202 27 C -0.219 4.219 28 H 0.072 0.928 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.039 0.961 32 H 0.075 0.925 33 H 0.215 0.785 34 H 0.062 0.938 35 H 0.229 0.771 36 H 0.175 0.825 37 H 0.172 0.828 38 H 0.244 0.756 39 H 0.236 0.764 40 H 0.183 0.817 41 H 0.128 0.872 42 H 0.108 0.892 43 H 0.106 0.894 44 H 0.108 0.892 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.655 -18.525 1.963 18.817 hybrid contribution -0.159 1.049 -0.497 1.172 sum 2.496 -17.476 1.466 17.714 Atomic orbital electron populations 1.22002 0.92907 1.01435 1.04275 1.20124 0.93855 0.92716 0.81809 1.21184 0.99284 0.87501 0.90966 1.42243 1.61178 1.10508 1.23110 1.19272 1.24794 0.87588 1.04260 0.91302 1.24664 1.00821 0.98167 0.97489 1.69650 1.39873 1.35935 1.13202 0.86148 0.77479 0.85221 0.77597 1.20604 1.22036 1.21987 1.45897 1.06597 1.56796 1.26624 1.17672 0.82929 0.80473 0.83566 1.90762 1.55858 1.42891 1.48911 1.21425 0.95458 1.00166 0.98433 1.21814 0.95074 0.93401 0.94685 1.22117 1.01930 0.95494 0.94080 1.21178 0.89838 0.98064 0.96268 1.17889 0.85420 0.78600 0.81818 1.43628 1.11489 1.52567 1.32075 1.90833 1.16721 1.62648 1.70921 1.67468 1.15333 1.17472 1.16973 1.22920 1.00087 0.90962 0.88901 1.22569 1.03981 0.90238 0.99490 1.22917 0.93020 1.02304 1.01959 1.22967 0.97351 0.99941 1.01634 0.92794 0.90820 0.90624 0.96056 0.92531 0.78516 0.93781 0.77062 0.82526 0.82782 0.75642 0.76397 0.81659 0.87185 0.89244 0.89394 0.89245 0.89059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 8.18 37.16 0.30 -1.72 16 2 C 0.20 3.03 0.55 -131.82 -0.07 2.96 16 3 C 0.14 2.82 4.83 -4.04 -0.02 2.80 16 4 N -0.73 -17.84 5.18 -59.91 -0.31 -18.15 16 5 C -0.23 -6.40 9.99 -15.06 -0.15 -6.55 16 6 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 7 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 8 N -0.94 -27.90 13.06 55.49 0.72 -27.18 16 9 Si 0.90 22.76 29.55 -169.99 -5.02 17.73 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 12 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 13 N -0.71 -9.93 4.15 -48.49 -0.20 -10.13 16 14 C 0.57 8.86 4.79 -12.25 -0.06 8.80 16 15 O -0.51 -9.52 12.69 5.34 0.07 -9.46 16 16 C -0.15 -2.00 5.90 -104.73 -0.62 -2.62 16 17 C -0.02 -0.30 9.71 -38.89 -0.38 -0.67 16 18 C -0.12 -1.37 9.62 -39.11 -0.38 -1.75 16 19 C 0.08 1.02 6.75 -82.93 -0.56 0.46 16 20 C 0.58 6.82 8.09 -12.11 -0.10 6.72 16 21 N -0.83 -6.64 8.86 30.64 0.27 -6.37 16 22 O -0.54 -7.81 17.15 5.37 0.09 -7.72 16 23 N -0.46 -5.33 9.52 -9.48 -0.09 -5.42 16 24 C 0.13 1.53 10.70 -17.17 -0.18 1.34 16 25 C -0.14 -1.90 4.86 -90.62 -0.44 -2.34 16 26 C -0.16 -2.05 8.53 -26.73 -0.23 -2.28 16 27 C -0.18 -1.94 9.68 -26.73 -0.26 -2.20 16 28 H 0.05 0.58 6.89 -51.93 -0.36 0.22 16 29 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.07 1.20 6.86 -51.93 -0.36 0.85 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 1.29 5.72 -51.93 -0.30 0.99 16 33 H 0.38 9.55 6.35 -40.82 -0.26 9.29 16 34 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 35 H 0.39 4.55 6.55 -40.82 -0.27 4.28 16 36 H 0.16 1.90 7.73 -52.49 -0.41 1.49 16 37 H 0.15 1.64 7.63 -52.48 -0.40 1.24 16 38 H 0.41 2.74 8.15 -40.82 -0.33 2.41 16 39 H 0.40 2.41 8.93 -40.82 -0.36 2.05 16 40 H 0.17 1.47 6.42 -52.49 -0.34 1.14 16 41 H 0.11 1.49 8.06 -51.93 -0.42 1.07 16 42 H 0.09 1.16 5.17 -51.93 -0.27 0.90 16 43 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.09 0.90 7.17 -51.93 -0.37 0.53 16 LS Contribution 369.50 15.07 5.57 5.57 Total: -1.00 -34.83 369.50 -7.81 -42.64 By element: Atomic # 1 Polarization: 21.77 SS G_CDS: -5.67 Total: 16.10 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: -3.23 Total: 2.39 kcal Atomic # 7 Polarization: -67.64 SS G_CDS: 0.39 Total: -67.25 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: 0.16 Total: -17.18 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.73 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.83 -7.81 -42.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481952295.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.055 kcal (2) G-P(sol) polarization free energy of solvation -34.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds