Wall clock time and date at job start Tue Mar 31 2020 16:34:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.46759 * 2 1 4 4 N 1.46495 * 109.47109 * 299.99873 * 3 2 1 5 5 C 1.36943 * 119.99921 * 180.02562 * 4 3 2 6 6 H 1.07999 * 119.99775 * 0.02562 * 5 4 3 7 7 C 1.38808 * 120.00198 * 180.02562 * 5 4 3 8 8 N 1.31625 * 119.99965 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00253 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.46922 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47723 * 119.99957 * 9 7 5 12 12 H 1.48505 * 109.47176 * 239.99806 * 9 7 5 13 13 N 1.46497 * 109.46982 * 240.00455 * 2 1 3 14 14 C 1.34784 * 119.99896 * 175.39559 * 13 2 1 15 15 O 1.21531 * 119.99606 * 355.81229 * 14 13 2 16 16 C 1.48001 * 120.00195 * 175.54271 * 14 13 2 17 17 C 1.39863 * 120.46336 * 180.27410 * 16 14 13 18 18 C 1.38455 * 118.35815 * 179.97438 * 17 16 14 19 19 C 1.39304 * 119.18994 * 0.02562 * 18 17 16 20 20 C 1.48335 * 119.57248 * 179.97438 * 19 18 17 21 21 N 1.34774 * 120.00190 * 180.02562 * 20 19 18 22 22 O 1.21495 * 119.99886 * 359.97438 * 20 19 18 23 23 N 1.32719 * 120.85546 * 0.02562 * 19 18 17 24 24 C 1.31416 * 121.80050 * 359.72250 * 23 19 18 25 25 C 1.52995 * 109.47266 * 120.00024 * 2 1 3 26 26 C 1.53000 * 117.49956 * 121.75836 * 25 2 1 27 27 C 1.52997 * 117.49850 * 53.13572 * 25 2 1 28 28 H 1.09002 * 109.46883 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47294 * 299.99796 * 1 2 3 30 30 H 1.09004 * 109.46861 * 59.99860 * 1 2 3 31 31 H 1.08997 * 109.47051 * 60.00055 * 3 2 1 32 32 H 1.09001 * 109.47060 * 179.97438 * 3 2 1 33 33 H 0.96996 * 120.00577 * 0.02562 * 4 3 2 34 34 H 0.97001 * 120.00082 * 179.97438 * 8 7 5 35 35 H 0.96995 * 120.00510 * 355.38835 * 13 2 1 36 36 H 1.07999 * 120.82691 * 359.97438 * 17 16 14 37 37 H 1.08003 * 120.40674 * 179.97438 * 18 17 16 38 38 H 0.96997 * 120.00063 * 359.97438 * 21 20 19 39 39 H 0.96997 * 120.00256 * 180.02562 * 21 20 19 40 40 H 1.07999 * 119.63606 * 180.26603 * 24 23 19 41 41 H 1.09006 * 115.55196 * 267.46971 * 25 2 1 42 42 H 1.09001 * 117.49725 * 0.02562 * 26 25 2 43 43 H 1.08998 * 117.49574 * 145.02034 * 26 25 2 44 44 H 1.08999 * 117.50234 * 214.97734 * 27 25 2 45 45 H 1.08998 * 117.49893 * 0.02562 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 1.5516 2.1331 -1.1961 5 6 1.8828 3.4441 -1.4131 6 1 2.5044 3.9687 -0.7026 7 6 1.4197 4.0986 -2.5462 8 7 0.6626 3.4590 -3.4124 9 14 1.8721 5.8865 -2.8425 10 1 2.7266 6.3720 -1.7293 11 1 2.6136 6.0039 -4.1238 12 1 0.6351 6.7055 -2.9098 13 7 2.0183 -0.6905 -1.1962 14 6 3.3399 -0.7331 -1.4574 15 8 4.1201 -0.1348 -0.7430 16 6 3.8416 -1.5133 -2.6108 17 6 5.2114 -1.5688 -2.8873 18 6 5.6328 -2.3121 -3.9768 19 6 4.6857 -2.9738 -4.7550 20 6 5.1276 -3.7721 -5.9246 21 7 4.2186 -4.4154 -6.6837 22 8 6.3090 -3.8451 -6.1987 23 7 3.3929 -2.8986 -4.4642 24 6 2.9535 -2.2078 -3.4362 25 6 2.0401 -0.7212 1.2492 26 6 2.9490 -1.9345 1.0428 27 6 1.5080 -2.1303 1.5181 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 3.1300 1.4426 0.0005 33 1 0.9937 1.6619 -1.8345 34 1 0.3387 3.9165 -4.2040 35 1 1.3907 -1.1171 -1.8002 36 1 5.9231 -1.0449 -2.2665 37 1 6.6828 -2.3773 -4.2209 38 1 3.2754 -4.3568 -6.4651 39 1 4.5077 -4.9377 -7.4483 40 1 1.8941 -2.1739 -3.2291 41 1 2.2377 -0.0848 2.1118 42 1 3.1840 -2.2187 0.0171 43 1 3.7451 -2.0964 1.7696 44 1 1.3560 -2.4210 2.5576 45 1 0.7949 -2.5436 0.8049 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481952295.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:01 Heat of formation + Delta-G solvation = -10.614751 kcal Electronic energy + Delta-G solvation = -28924.668730 eV Core-core repulsion = 24942.784846 eV Total energy + Delta-G solvation = -3981.883884 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.16781 -41.26808 -39.85519 -38.36309 -36.57680 -35.04822 -34.97105 -33.64675 -33.47906 -32.32867 -30.98543 -27.65680 -26.74246 -25.49598 -24.77669 -23.21414 -23.05118 -22.73193 -21.73951 -20.39932 -19.52752 -19.26606 -18.84388 -18.21130 -17.36617 -17.05896 -16.79935 -16.29531 -16.28241 -16.15487 -15.82298 -15.52932 -15.34987 -14.99700 -14.94322 -14.62383 -14.41675 -14.29639 -13.77830 -13.54270 -13.48440 -13.26089 -12.98711 -12.83137 -12.40579 -12.26651 -12.08856 -11.97747 -11.77377 -11.68994 -11.36875 -11.17666 -11.12604 -10.95075 -10.85499 -10.80677 -10.45526 -10.41263 -9.95815 -8.89215 -7.94409 -5.18858 -0.89241 0.01253 1.29739 1.44294 1.45491 1.54768 2.00194 2.10232 2.23101 2.55425 2.75274 2.96053 3.02469 3.39427 3.55668 3.64355 3.68049 3.77799 3.81564 3.99651 4.02217 4.03532 4.20376 4.38595 4.39298 4.49132 4.59239 4.77784 4.82727 4.83357 4.92807 4.95735 5.00592 5.10347 5.23446 5.25660 5.32022 5.36148 5.40389 5.49892 5.69394 5.73957 6.16815 6.29438 6.49906 6.58421 7.15147 7.26621 7.37089 8.12644 8.40578 9.28762 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.009121 B = 0.004019 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3069.078651 B = 6964.855520 C = 9001.928069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.210 3.790 3 C 0.138 3.862 4 N -0.729 5.729 5 C -0.238 4.238 6 H 0.062 0.938 7 C -0.068 4.068 8 N -0.962 5.962 9 Si 0.963 3.037 10 H -0.274 1.274 11 H -0.296 1.296 12 H -0.289 1.289 13 N -0.699 5.699 14 C 0.566 3.434 15 O -0.548 6.548 16 C -0.165 4.165 17 C -0.027 4.027 18 C -0.117 4.117 19 C 0.080 3.920 20 C 0.577 3.423 21 N -0.812 5.812 22 O -0.569 6.569 23 N -0.455 5.455 24 C 0.138 3.862 25 C -0.162 4.162 26 C -0.173 4.173 27 C -0.148 4.148 28 H 0.091 0.909 29 H 0.074 0.926 30 H 0.050 0.950 31 H 0.017 0.983 32 H 0.032 0.968 33 H 0.378 0.622 34 H 0.250 0.750 35 H 0.408 0.592 36 H 0.155 0.845 37 H 0.163 0.837 38 H 0.422 0.578 39 H 0.417 0.583 40 H 0.194 0.806 41 H 0.102 0.898 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.108 0.892 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.565 -20.359 1.926 20.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.124 3.876 3 C 0.011 3.989 4 N -0.372 5.372 5 C -0.370 4.370 6 H 0.080 0.920 7 C -0.261 4.261 8 N -0.614 5.614 9 Si 0.793 3.207 10 H -0.199 1.199 11 H -0.223 1.223 12 H -0.216 1.216 13 N -0.351 5.351 14 C 0.353 3.647 15 O -0.426 6.426 16 C -0.171 4.171 17 C -0.054 4.054 18 C -0.138 4.138 19 C -0.058 4.058 20 C 0.360 3.640 21 N -0.375 5.375 22 O -0.448 6.448 23 N -0.166 5.166 24 C -0.023 4.023 25 C -0.182 4.182 26 C -0.210 4.210 27 C -0.185 4.185 28 H 0.110 0.890 29 H 0.093 0.907 30 H 0.069 0.931 31 H 0.034 0.966 32 H 0.049 0.951 33 H 0.211 0.789 34 H 0.059 0.941 35 H 0.246 0.754 36 H 0.172 0.828 37 H 0.181 0.819 38 H 0.254 0.746 39 H 0.250 0.750 40 H 0.210 0.790 41 H 0.120 0.880 42 H 0.102 0.898 43 H 0.105 0.895 44 H 0.126 0.874 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 1.371 -20.190 1.905 20.326 hybrid contribution 0.250 1.523 -0.461 1.611 sum 1.620 -18.667 1.444 18.793 Atomic orbital electron populations 1.21947 0.91347 1.03506 1.03066 1.19914 0.94796 0.89724 0.83207 1.21229 0.97760 0.90878 0.89017 1.42303 1.60979 1.09683 1.24239 1.19547 1.24176 0.89192 1.04070 0.92010 1.25339 1.01384 1.01777 0.97557 1.69767 1.40942 1.37169 1.13499 0.85224 0.77189 0.81072 0.77230 1.19852 1.22329 1.21624 1.45818 1.06498 1.56198 1.26599 1.18001 0.83027 0.80014 0.83644 1.90744 1.56823 1.44692 1.50389 1.21346 0.96036 1.01158 0.98510 1.21878 0.95086 0.93486 0.94942 1.22205 1.02536 0.95294 0.93757 1.21387 0.90136 0.97853 0.96376 1.17878 0.85334 0.78797 0.81978 1.43491 1.11452 1.51112 1.31486 1.90822 1.18073 1.64056 1.71817 1.67546 1.14903 1.17381 1.16782 1.23303 1.01031 0.89831 0.88094 1.22429 1.06109 0.91292 0.98340 1.22917 0.94349 1.01962 1.01800 1.23074 0.95924 0.96416 1.03092 0.89018 0.90748 0.93076 0.96557 0.95059 0.78882 0.94106 0.75448 0.82758 0.81934 0.74558 0.74973 0.78964 0.87965 0.89840 0.89523 0.87390 0.87353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.58 8.18 71.98 0.59 -3.00 16 2 C 0.21 6.18 0.55 3.61 0.00 6.18 16 3 C 0.14 5.75 4.83 86.38 0.42 6.17 16 4 N -0.73 -36.40 5.18 -343.46 -1.78 -38.18 16 5 C -0.24 -13.56 9.99 84.03 0.84 -12.72 16 6 H 0.06 3.54 7.83 -2.91 -0.02 3.52 16 7 C -0.07 -3.92 5.50 84.86 0.47 -3.46 16 8 N -0.96 -57.61 13.06 21.65 0.28 -57.33 16 9 Si 0.96 47.07 29.55 68.60 2.03 49.10 16 10 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 11 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 12 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 13 N -0.70 -18.97 4.15 -425.60 -1.77 -20.74 16 14 C 0.57 17.68 4.79 86.83 0.42 18.09 16 15 O -0.55 -21.17 12.69 -3.81 -0.05 -21.22 16 16 C -0.17 -4.34 5.90 -19.93 -0.12 -4.46 16 17 C -0.03 -0.70 9.71 22.72 0.22 -0.48 16 18 C -0.12 -2.75 9.62 22.58 0.22 -2.53 16 19 C 0.08 1.86 6.75 41.96 0.28 2.14 16 20 C 0.58 12.85 8.09 86.93 0.70 13.55 16 21 N -0.81 -11.29 8.86 -175.27 -1.55 -12.85 16 22 O -0.57 -16.24 17.15 -3.70 -0.06 -16.31 16 23 N -0.46 -9.68 9.52 -183.90 -1.75 -11.43 16 24 C 0.14 2.96 10.70 85.12 0.91 3.87 16 25 C -0.16 -4.11 4.86 -10.80 -0.05 -4.17 16 26 C -0.17 -4.08 8.53 30.59 0.26 -3.82 16 27 C -0.15 -2.68 9.68 30.59 0.30 -2.38 16 28 H 0.09 1.62 6.89 -2.39 -0.02 1.61 16 29 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.05 1.57 6.86 -2.38 -0.02 1.55 16 31 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.03 1.49 5.72 -2.39 -0.01 1.48 16 33 H 0.38 19.15 6.35 -92.71 -0.59 18.57 16 34 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 35 H 0.41 8.62 6.55 -92.71 -0.61 8.01 16 36 H 0.15 3.92 7.73 -2.91 -0.02 3.90 16 37 H 0.16 3.47 7.63 -2.91 -0.02 3.44 16 38 H 0.42 4.57 8.15 -92.71 -0.76 3.81 16 39 H 0.42 4.10 8.93 -92.71 -0.83 3.27 16 40 H 0.19 2.90 6.42 -2.91 -0.02 2.88 16 41 H 0.10 2.74 8.06 -2.38 -0.02 2.72 16 42 H 0.08 2.08 5.17 -2.39 -0.01 2.07 16 43 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 44 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 45 H 0.11 1.62 7.17 -2.39 -0.02 1.60 16 Total: -1.00 -75.95 369.50 -0.89 -76.84 By element: Atomic # 1 Polarization: 40.81 SS G_CDS: -1.69 Total: 39.12 kcal Atomic # 6 Polarization: 7.54 SS G_CDS: 5.45 Total: 12.99 kcal Atomic # 7 Polarization: -133.96 SS G_CDS: -6.57 Total: -140.52 kcal Atomic # 8 Polarization: -37.41 SS G_CDS: -0.11 Total: -37.53 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 2.03 Total: 49.10 kcal Total: -75.95 -0.89 -76.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481952295.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.223 kcal (2) G-P(sol) polarization free energy of solvation -75.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds