Wall clock time and date at job start Tue Mar 31 2020 16:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47043 * 2 1 4 4 N 1.46504 * 109.47033 * 179.97438 * 3 2 1 5 5 C 1.34782 * 119.99956 * 269.99757 * 4 3 2 6 6 O 1.21284 * 119.99781 * 179.97438 * 5 4 3 7 7 C 1.50692 * 120.00077 * 0.02562 * 5 4 3 8 8 S 1.81394 * 109.47221 * 179.97438 * 7 5 4 9 9 C 1.81402 * 101.92228 * 179.97438 * 8 7 5 10 10 O 1.42105 * 108.58095 * 294.48558 * 8 7 5 11 11 O 1.42103 * 108.57747 * 65.51303 * 8 7 5 12 12 C 1.46493 * 120.00061 * 90.00088 * 4 3 2 13 13 C 1.53349 * 109.42022 * 240.12784 * 12 4 3 14 14 C 1.53196 * 109.15353 * 178.67345 * 13 12 4 15 15 N 1.46928 * 108.89135 * 54.57497 * 14 13 12 16 16 C 1.36936 * 120.63013 * 126.29699 * 15 14 13 17 17 H 1.07999 * 120.00022 * 331.83633 * 16 15 14 18 18 C 1.38813 * 120.00005 * 151.82709 * 16 15 14 19 19 N 1.31618 * 120.00004 * 343.09585 * 18 16 15 20 20 Si 1.86806 * 119.99953 * 163.09475 * 18 16 15 21 21 H 1.48494 * 109.47083 * 60.00061 * 20 18 16 22 22 H 1.48500 * 109.46851 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47024 * 300.00112 * 20 18 16 24 24 C 1.46924 * 118.73859 * 306.32337 * 15 14 13 25 25 C 1.53044 * 109.46300 * 119.99964 * 12 4 3 26 26 H 1.09003 * 109.46964 * 300.00124 * 1 2 3 27 27 H 1.08997 * 109.46698 * 60.00118 * 1 2 3 28 28 H 1.08999 * 109.47004 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47321 * 239.99734 * 2 1 3 30 30 H 1.09005 * 109.47498 * 119.99758 * 2 1 3 31 31 H 1.09003 * 109.47342 * 60.00108 * 3 2 1 32 32 H 1.08997 * 109.47277 * 299.99527 * 3 2 1 33 33 H 1.08999 * 109.47480 * 299.99992 * 7 5 4 34 34 H 1.09007 * 109.47395 * 59.99528 * 7 5 4 35 35 H 1.09002 * 109.47281 * 60.00159 * 9 8 7 36 36 H 1.09007 * 109.47288 * 180.02562 * 9 8 7 37 37 H 1.08994 * 109.47405 * 299.99846 * 9 8 7 38 38 H 1.09003 * 109.46113 * 0.02850 * 12 4 3 39 39 H 1.08998 * 109.68701 * 58.70834 * 13 12 4 40 40 H 1.09000 * 109.47234 * 298.50902 * 13 12 4 41 41 H 1.08996 * 109.58345 * 294.72319 * 14 13 12 42 42 H 1.08994 * 109.58644 * 174.43734 * 14 13 12 43 43 H 0.96996 * 119.99787 * 179.97438 * 19 18 16 44 44 H 1.09000 * 109.58664 * 173.39523 * 24 15 14 45 45 H 1.08996 * 109.58580 * 293.67452 * 24 15 14 46 46 H 1.08992 * 109.49619 * 61.43083 * 25 12 4 47 47 H 1.08999 * 109.52313 * 301.35096 * 25 12 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1785 1.4427 1.1682 6 8 5.3913 1.4422 1.1686 7 6 3.4244 1.4424 2.4729 8 16 4.6026 1.4420 3.8521 9 6 3.4964 1.4425 5.2899 10 8 5.3212 0.2162 3.8335 11 8 5.3212 2.6679 3.8340 12 6 4.2381 1.4423 -1.2677 13 6 5.1168 0.1882 -1.3486 14 6 5.8550 0.1774 -2.6909 15 7 6.5892 1.4414 -2.8403 16 6 7.9310 1.4407 -3.1133 17 1 8.5478 0.6159 -2.7883 18 6 8.4985 2.5002 -3.8080 19 7 7.7325 3.3271 -4.4876 20 14 10.3492 2.7522 -3.7782 21 1 11.0211 1.5535 -4.3407 22 1 10.6995 3.9442 -4.5917 23 1 10.7980 2.9599 -2.3779 24 6 5.8563 2.7059 -2.6905 25 6 5.1179 2.6920 -1.3484 26 1 -0.3633 0.5139 0.8900 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.6768 1.9563 -0.8900 33 1 2.7974 2.3321 2.5304 34 1 2.7980 0.5522 2.5303 35 1 2.8673 0.5527 5.2646 36 1 4.0894 1.4427 6.2046 37 1 2.8680 2.3326 5.2645 38 1 3.5299 1.4427 -2.0964 39 1 4.4937 -0.7025 -1.2690 40 1 5.8419 0.1995 -0.5348 41 1 5.1352 0.0749 -3.5029 42 1 6.5555 -0.6572 -2.7160 43 1 8.1290 4.0675 -4.9727 44 1 6.5579 3.5398 -2.7129 45 1 5.1384 2.8107 -3.5040 46 1 5.8427 2.6797 -0.5345 47 1 4.4944 3.5823 -1.2670 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490612181.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:07 Heat of formation + Delta-G solvation = -77.828397 kcal Electronic energy + Delta-G solvation = -28472.066926 eV Core-core repulsion = 24590.419640 eV Total energy + Delta-G solvation = -3881.647286 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.32905 -37.16003 -37.05785 -36.21524 -36.00533 -33.49758 -32.21956 -31.00621 -30.00017 -29.70570 -28.99106 -26.34927 -24.85294 -22.57140 -22.17175 -21.79999 -19.80811 -19.09096 -18.80073 -17.37062 -16.98493 -16.55822 -16.43304 -15.85351 -15.54899 -15.21532 -14.91636 -14.58213 -14.00985 -13.74273 -13.71157 -13.55075 -13.53898 -13.39483 -13.04046 -12.94180 -12.55303 -12.51718 -12.38429 -12.10522 -12.04140 -11.97655 -11.64649 -11.36469 -11.28279 -11.16285 -11.03351 -10.95713 -10.85634 -10.60549 -10.30855 -10.08655 -10.02285 -9.70195 -9.56031 -9.37783 -8.52811 -8.28808 -6.57420 -5.69170 -3.10308 -0.30868 2.51155 2.54202 2.86672 3.48418 3.52930 3.57463 3.58727 3.77428 4.16563 4.34328 4.44081 4.55186 4.60562 4.69355 4.79551 4.85414 4.98637 5.11970 5.25370 5.31751 5.36809 5.43771 5.50736 5.61580 5.67120 5.71497 5.78077 5.84680 5.97983 6.15046 6.31401 6.39069 6.56266 6.61338 6.78158 6.86667 7.01631 7.12682 7.35380 7.54888 7.74910 7.90669 8.11636 8.55817 9.31692 9.95024 10.51151 11.39835 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012608 B = 0.003933 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.225876 B = 7117.185044 C = 8656.841763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.146 4.146 3 C 0.104 3.896 4 N -0.599 5.599 5 C 0.537 3.463 6 O -0.508 6.508 7 C -0.661 4.661 8 S 2.453 3.547 9 C -0.665 4.665 10 O -0.919 6.919 11 O -0.918 6.918 12 C 0.159 3.841 13 C -0.150 4.150 14 C 0.151 3.849 15 N -0.589 5.589 16 C -0.248 4.248 17 H 0.065 0.935 18 C 0.002 3.998 19 N -0.906 5.906 20 Si 0.902 3.098 21 H -0.283 1.283 22 H -0.291 1.291 23 H -0.283 1.283 24 C 0.177 3.823 25 C -0.158 4.158 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.156 0.844 34 H 0.154 0.846 35 H 0.127 0.873 36 H 0.131 0.869 37 H 0.128 0.872 38 H 0.080 0.920 39 H 0.047 0.953 40 H 0.084 0.916 41 H 0.015 0.985 42 H 0.056 0.944 43 H 0.253 0.747 44 H 0.090 0.910 45 H 0.016 0.984 46 H 0.081 0.919 47 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.202 -4.269 16.403 26.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.185 4.185 3 C -0.019 4.019 4 N -0.330 5.330 5 C 0.322 3.678 6 O -0.384 6.384 7 C -0.788 4.788 8 S 2.629 3.371 9 C -0.814 4.814 10 O -0.916 6.916 11 O -0.915 6.915 12 C 0.058 3.942 13 C -0.190 4.190 14 C 0.024 3.976 15 N -0.312 5.312 16 C -0.378 4.378 17 H 0.082 0.918 18 C -0.196 4.196 19 N -0.551 5.551 20 Si 0.732 3.268 21 H -0.209 1.209 22 H -0.217 1.217 23 H -0.209 1.209 24 C 0.050 3.950 25 C -0.198 4.198 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.102 0.898 33 H 0.174 0.826 34 H 0.172 0.828 35 H 0.146 0.854 36 H 0.150 0.850 37 H 0.146 0.854 38 H 0.098 0.902 39 H 0.065 0.935 40 H 0.102 0.898 41 H 0.033 0.967 42 H 0.074 0.926 43 H 0.063 0.937 44 H 0.108 0.892 45 H 0.034 0.966 46 H 0.100 0.900 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -18.586 -4.120 16.225 25.013 hybrid contribution -0.443 0.179 0.054 0.481 sum -19.029 -3.940 16.279 25.351 Atomic orbital electron populations 1.21713 0.95072 1.02042 1.01946 1.22018 0.96061 0.97244 1.03161 1.21739 0.79850 0.96967 1.03360 1.48210 1.06261 1.72310 1.06262 1.19017 0.87318 0.77559 0.83903 1.90897 1.12641 1.48468 1.86409 1.30955 1.19672 1.12763 1.15418 1.07275 0.76747 0.75902 0.77196 1.30431 1.18033 1.11312 1.21625 1.93605 1.66800 1.45847 1.85379 1.93613 1.66778 1.45789 1.85333 1.21295 0.93206 0.97611 0.82108 1.22546 0.99332 0.94815 1.02270 1.20827 0.94180 0.90389 0.92195 1.44007 1.05868 0.99384 1.81915 1.19157 0.83242 1.06647 1.28711 0.91778 1.25004 0.97807 0.99892 0.96893 1.70014 1.34049 1.18263 1.32753 0.86372 0.85588 0.77211 0.77654 1.20931 1.21701 1.20912 1.20722 0.94143 0.90674 0.89446 1.22681 0.99157 0.94260 1.03675 0.92730 0.92346 0.92399 0.90917 0.91898 0.90614 0.89832 0.82635 0.82779 0.85404 0.85007 0.85369 0.90215 0.93455 0.89757 0.96719 0.92574 0.93710 0.89232 0.96593 0.90013 0.93612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.91 37.16 0.37 -0.49 16 2 C -0.15 -1.14 6.26 -26.73 -0.17 -1.30 16 3 C 0.10 0.92 5.18 -4.04 -0.02 0.90 16 4 N -0.60 -8.21 2.42 -165.88 -0.40 -8.61 16 5 C 0.54 8.06 7.11 -10.99 -0.08 7.98 16 6 O -0.51 -10.31 11.87 2.55 0.03 -10.28 16 7 C -0.66 -5.63 4.84 36.00 0.17 -5.46 16 8 S 2.45 25.86 4.60 -107.50 -0.49 25.37 16 9 C -0.67 -2.97 10.62 101.05 1.07 -1.90 16 10 O -0.92 -13.79 17.95 -59.53 -1.07 -14.86 16 11 O -0.92 -14.04 17.95 -59.52 -1.07 -15.10 16 12 C 0.16 2.75 2.51 -67.73 -0.17 2.58 16 13 C -0.15 -2.86 5.30 -26.45 -0.14 -3.00 16 14 C 0.15 3.34 6.51 -3.71 -0.02 3.31 16 15 N -0.59 -15.55 2.99 -172.32 -0.52 -16.07 16 16 C -0.25 -7.19 9.58 -15.06 -0.14 -7.34 16 17 H 0.06 1.84 7.88 -52.49 -0.41 1.43 16 18 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 19 N -0.91 -27.07 11.20 55.49 0.62 -26.45 16 20 Si 0.90 22.86 29.59 -169.99 -5.03 17.83 16 21 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 23 H -0.28 -7.22 7.11 56.52 0.40 -6.81 16 24 C 0.18 4.40 5.30 -3.71 -0.02 4.38 16 25 C -0.16 -3.28 5.27 -26.61 -0.14 -3.42 16 26 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.47 7.22 -51.93 -0.37 0.09 16 31 H 0.08 0.46 6.44 -51.93 -0.33 0.13 16 32 H 0.08 0.71 7.92 -51.93 -0.41 0.30 16 33 H 0.16 0.71 7.40 -51.92 -0.38 0.33 16 34 H 0.15 0.73 7.19 -51.92 -0.37 0.36 16 35 H 0.13 0.27 8.14 -51.92 -0.42 -0.15 16 36 H 0.13 0.55 8.14 -51.92 -0.42 0.13 16 37 H 0.13 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.08 1.28 7.79 -51.93 -0.40 0.87 16 39 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.08 1.86 6.22 -51.93 -0.32 1.54 16 41 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.06 1.23 7.93 -51.93 -0.41 0.82 16 43 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 44 H 0.09 2.52 6.06 -51.93 -0.31 2.20 16 45 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.08 1.94 6.21 -51.93 -0.32 1.62 16 47 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 379.33 15.07 5.72 5.72 Total: -1.00 -40.15 379.33 -9.44 -49.59 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: -7.85 Total: -3.33 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: 0.63 Total: -3.78 kcal Atomic # 7 Polarization: -50.83 SS G_CDS: -0.30 Total: -51.13 kcal Atomic # 8 Polarization: -38.14 SS G_CDS: -2.11 Total: -40.25 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.03 Total: 17.83 kcal Atomic # 16 Polarization: 25.86 SS G_CDS: -0.49 Total: 25.37 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -40.15 -9.44 -49.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490612181.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.239 kcal (2) G-P(sol) polarization free energy of solvation -40.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds