Wall clock time and date at job start Tue Mar 31 2020 16:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47140 * 2 1 4 4 N 1.46503 * 109.47415 * 180.02562 * 3 2 1 5 5 C 1.34772 * 119.99891 * 90.00254 * 4 3 2 6 6 O 1.21282 * 119.99755 * 180.02562 * 5 4 3 7 7 C 1.50693 * 119.99944 * 359.72650 * 5 4 3 8 8 S 1.81404 * 109.46964 * 180.27604 * 7 5 4 9 9 O 1.42101 * 108.57764 * 294.48742 * 8 7 5 10 10 O 1.42102 * 108.57982 * 65.51521 * 8 7 5 11 11 C 1.81398 * 101.92236 * 179.97438 * 8 7 5 12 12 C 1.52999 * 109.47536 * 179.97438 * 11 8 7 13 13 C 1.46502 * 119.99866 * 270.00426 * 4 3 2 14 14 H 1.09002 * 110.64146 * 359.29924 * 13 4 3 15 15 C 1.55161 * 110.71905 * 122.43722 * 13 4 3 16 16 C 1.55120 * 101.48332 * 153.73316 * 15 13 4 17 17 N 1.47422 * 104.94625 * 323.22429 * 16 15 13 18 18 C 1.36939 * 125.65225 * 204.03929 * 17 16 15 19 19 H 1.07999 * 120.00207 * 161.47440 * 18 17 16 20 20 C 1.38813 * 119.99590 * 341.47937 * 18 17 16 21 21 N 1.31619 * 119.99608 * 157.63269 * 20 18 17 22 22 Si 1.86792 * 120.00302 * 337.63133 * 20 18 17 23 23 H 1.48500 * 109.47159 * 84.53399 * 22 20 18 24 24 H 1.48497 * 109.47151 * 204.53878 * 22 20 18 25 25 H 1.48506 * 109.46928 * 324.54123 * 22 20 18 26 26 C 1.47025 * 108.70466 * 24.00206 * 17 16 15 27 27 H 1.08995 * 109.47372 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46906 * 299.99674 * 1 2 3 29 29 H 1.09001 * 109.47347 * 59.99285 * 1 2 3 30 30 H 1.08998 * 109.47274 * 240.00626 * 2 1 3 31 31 H 1.08991 * 109.47581 * 120.00183 * 2 1 3 32 32 H 1.09003 * 109.46955 * 60.00356 * 3 2 1 33 33 H 1.09001 * 109.47584 * 300.00569 * 3 2 1 34 34 H 1.09004 * 109.47191 * 300.27139 * 7 5 4 35 35 H 1.09004 * 109.47320 * 60.27826 * 7 5 4 36 36 H 1.09000 * 109.47393 * 300.00512 * 11 8 7 37 37 H 1.09003 * 109.47124 * 59.99912 * 11 8 7 38 38 H 1.09003 * 109.46910 * 59.99874 * 12 11 8 39 39 H 1.08995 * 109.47347 * 180.02562 * 12 11 8 40 40 H 1.08997 * 109.46810 * 300.00456 * 12 11 8 41 41 H 1.08993 * 111.00643 * 271.93710 * 15 13 4 42 42 H 1.08996 * 111.00173 * 35.79094 * 15 13 4 43 43 H 1.08998 * 110.42076 * 204.29549 * 16 15 13 44 44 H 1.08999 * 110.21049 * 82.04580 * 16 15 13 45 45 H 0.97002 * 119.99869 * 180.02562 * 21 20 18 46 46 H 1.09000 * 109.88376 * 239.52875 * 26 17 16 47 47 H 1.09001 * 110.01287 * 118.42880 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1783 1.4428 -1.1681 6 8 5.3911 1.4424 -1.1686 7 6 3.4243 1.4368 -2.4728 8 16 4.6025 1.4305 -3.8521 9 8 5.3211 2.6564 -3.8393 10 8 5.3211 0.2048 -3.8281 11 6 3.4964 1.4231 -5.2898 12 6 4.3287 1.4177 -6.5736 13 6 4.2380 1.4423 1.2678 14 1 3.5471 1.4546 2.1109 15 6 5.1867 0.2175 1.3534 16 6 6.2811 0.7414 2.3199 17 7 6.4452 2.1648 1.9727 18 6 7.5654 2.9183 2.2020 19 1 7.7148 3.8418 1.6625 20 6 8.5090 2.4949 3.1279 21 7 9.7477 2.9332 3.0525 22 14 8.0207 1.3031 4.4809 23 1 8.0958 -0.0878 3.9663 24 1 8.9458 1.4556 5.6324 25 1 6.6321 1.5942 4.9195 26 6 5.2072 2.6412 1.3386 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6766 1.9564 -0.8899 34 1 2.7977 0.5465 -2.5262 35 1 2.7976 2.3266 -2.5344 36 1 2.8679 0.5331 -5.2601 37 1 2.8673 2.3129 -5.2688 38 1 4.9581 0.5280 -6.5948 39 1 3.6640 1.4137 -7.4375 40 1 4.9568 2.3080 -6.6030 41 1 4.6721 -0.6467 1.7731 42 1 5.6097 -0.0179 0.3768 43 1 7.2157 0.2028 2.1639 44 1 5.9510 0.6388 3.3536 45 1 10.4072 2.6371 3.6993 46 1 5.4215 3.0044 0.3335 47 1 4.7660 3.4398 1.9350 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567693249.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:06 Heat of formation + Delta-G solvation = -65.796711 kcal Electronic energy + Delta-G solvation = -28377.682976 eV Core-core repulsion = 24496.557423 eV Total energy + Delta-G solvation = -3881.125553 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -40.43720 -37.23852 -37.02775 -36.29501 -36.00762 -33.49588 -33.19455 -32.10043 -30.84685 -29.29030 -27.87418 -26.20219 -24.56115 -24.03897 -22.31275 -21.34030 -20.63830 -19.09400 -18.80621 -17.52898 -17.15014 -16.80905 -16.52983 -16.11853 -15.56793 -15.41693 -15.02209 -14.99275 -14.55737 -14.25164 -13.99961 -13.55050 -13.45641 -13.38501 -13.00408 -12.84309 -12.78559 -12.65700 -12.50865 -12.06859 -12.02343 -11.99679 -11.90496 -11.69522 -11.66803 -11.21925 -11.18472 -11.13204 -11.00126 -10.89691 -10.84843 -10.66565 -10.10605 -9.94273 -9.59861 -9.29934 -8.63757 -8.50474 -6.87455 -5.79382 -3.08073 -0.31379 2.45834 2.56548 2.74674 3.45240 3.53931 3.55394 3.58886 3.76674 4.10922 4.24782 4.28390 4.48275 4.60302 4.67792 4.69899 4.80641 4.82780 4.91194 5.04708 5.07361 5.19168 5.24214 5.25184 5.25863 5.34662 5.45147 5.47034 5.59280 5.59795 5.65184 5.71151 5.87478 5.94649 6.10773 6.27988 6.33958 6.61192 6.73216 6.92617 7.01171 7.26648 7.86565 8.03757 8.46790 8.99168 9.83975 10.32730 11.37197 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012699 B = 0.004119 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.371538 B = 6796.041595 C = 8440.569621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.147 4.147 3 C 0.105 3.895 4 N -0.595 5.595 5 C 0.534 3.466 6 O -0.494 6.494 7 C -0.662 4.662 8 S 2.447 3.553 9 O -0.912 6.912 10 O -0.916 6.916 11 C -0.623 4.623 12 C -0.147 4.147 13 C 0.133 3.867 14 H 0.096 0.904 15 C -0.145 4.145 16 C 0.116 3.884 17 N -0.600 5.600 18 C -0.232 4.232 19 H 0.091 0.909 20 C 0.019 3.981 21 N -0.910 5.910 22 Si 0.883 3.117 23 H -0.286 1.286 24 H -0.304 1.304 25 H -0.278 1.278 26 C 0.130 3.870 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.155 0.845 35 H 0.157 0.843 36 H 0.131 0.869 37 H 0.131 0.869 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.062 0.938 42 H 0.090 0.910 43 H 0.061 0.939 44 H 0.023 0.977 45 H 0.262 0.738 46 H 0.050 0.950 47 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.143 -6.038 -15.179 29.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.185 4.185 3 C -0.018 4.018 4 N -0.328 5.328 5 C 0.319 3.681 6 O -0.368 6.368 7 C -0.789 4.789 8 S 2.623 3.377 9 O -0.909 6.909 10 O -0.913 6.913 11 C -0.752 4.752 12 C -0.206 4.206 13 C 0.030 3.970 14 H 0.114 0.886 15 C -0.184 4.184 16 C -0.010 4.010 17 N -0.327 5.327 18 C -0.359 4.359 19 H 0.108 0.892 20 C -0.179 4.179 21 N -0.554 5.554 22 Si 0.714 3.286 23 H -0.213 1.213 24 H -0.232 1.232 25 H -0.204 1.204 26 C 0.003 3.997 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.103 0.897 33 H 0.097 0.903 34 H 0.173 0.827 35 H 0.175 0.825 36 H 0.149 0.851 37 H 0.150 0.850 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.094 0.906 41 H 0.081 0.919 42 H 0.108 0.892 43 H 0.079 0.921 44 H 0.041 0.959 45 H 0.071 0.929 46 H 0.068 0.932 47 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -23.345 -5.946 -15.043 28.401 hybrid contribution -1.527 -0.685 0.929 1.914 sum -24.872 -6.631 -14.114 29.356 Atomic orbital electron populations 1.21712 0.94989 1.02093 1.02006 1.22022 0.96128 0.97191 1.03208 1.21756 0.79372 0.97055 1.03618 1.47814 1.06326 1.73033 1.05600 1.19051 0.87433 0.77792 0.83859 1.91001 1.12361 1.47099 1.86333 1.30963 1.19820 1.12796 1.15312 1.07688 0.77007 0.76108 0.76913 1.93615 1.66556 1.45625 1.85145 1.93594 1.66688 1.45804 1.85258 1.30369 1.15952 1.11307 1.17541 1.21513 1.00032 1.04140 0.94882 1.22284 0.93561 0.97895 0.83273 0.88557 1.23216 0.97053 0.95791 1.02328 1.21922 0.97190 0.86847 0.94991 1.44522 1.12029 1.05212 1.70901 1.18646 0.94020 1.05579 1.17698 0.89157 1.24969 0.95359 0.98509 0.99040 1.69866 1.01104 1.47469 1.36986 0.86946 0.77313 0.81163 0.83194 1.21265 1.23185 1.20415 1.21594 0.86719 0.93248 0.98111 0.92371 0.92357 0.92631 0.91775 0.90988 0.89709 0.90307 0.82729 0.82537 0.85101 0.85030 0.90646 0.90082 0.90583 0.91892 0.89155 0.92095 0.95922 0.92863 0.93242 0.95378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.91 37.16 0.37 -0.38 16 2 C -0.15 -1.02 6.26 -26.73 -0.17 -1.19 16 3 C 0.11 0.84 5.19 -4.04 -0.02 0.82 16 4 N -0.60 -7.87 2.54 -164.02 -0.42 -8.28 16 5 C 0.53 8.06 6.79 -10.99 -0.07 7.99 16 6 O -0.49 -10.36 11.98 2.55 0.03 -10.33 16 7 C -0.66 -5.81 4.84 36.00 0.17 -5.64 16 8 S 2.45 28.17 3.96 -107.50 -0.43 27.74 16 9 O -0.91 -14.80 17.95 -59.52 -1.07 -15.87 16 10 O -0.92 -14.37 17.94 -59.53 -1.07 -15.43 16 11 C -0.62 -3.51 6.52 37.16 0.24 -3.27 16 12 C -0.15 -0.98 9.92 37.16 0.37 -0.61 16 13 C 0.13 2.21 3.43 -66.09 -0.23 1.98 16 14 H 0.10 1.35 7.86 -51.93 -0.41 0.94 16 15 C -0.14 -2.72 6.44 -24.47 -0.16 -2.88 16 16 C 0.12 2.74 4.69 -2.42 -0.01 2.73 16 17 N -0.60 -15.89 3.21 -169.94 -0.54 -16.44 16 18 C -0.23 -7.14 10.57 -15.06 -0.16 -7.30 16 19 H 0.09 2.96 8.06 -52.49 -0.42 2.54 16 20 C 0.02 0.59 5.43 -17.43 -0.09 0.50 16 21 N -0.91 -29.76 13.97 55.49 0.78 -28.98 16 22 Si 0.88 23.72 24.27 -169.99 -4.13 19.59 16 23 H -0.29 -7.42 6.49 56.52 0.37 -7.05 16 24 H -0.30 -8.19 7.11 56.52 0.40 -7.79 16 25 H -0.28 -7.24 6.66 56.52 0.38 -6.86 16 26 C 0.13 2.82 6.48 -3.06 -0.02 2.80 16 27 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.06 0.43 7.20 -51.93 -0.37 0.06 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.61 7.95 -51.93 -0.41 0.20 16 33 H 0.08 0.43 6.45 -51.93 -0.33 0.09 16 34 H 0.15 0.73 7.16 -51.92 -0.37 0.36 16 35 H 0.16 0.74 7.41 -51.92 -0.38 0.35 16 36 H 0.13 0.37 8.14 -51.92 -0.42 -0.05 16 37 H 0.13 0.39 8.14 -51.92 -0.42 -0.03 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.09 1.87 6.03 -51.93 -0.31 1.56 16 43 H 0.06 1.57 6.63 -51.93 -0.34 1.22 16 44 H 0.02 0.54 5.58 -51.93 -0.29 0.25 16 45 H 0.26 8.08 8.31 -40.82 -0.34 7.74 16 46 H 0.05 1.17 6.07 -51.93 -0.32 0.85 16 47 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 376.82 15.07 5.68 5.68 Total: -1.00 -43.08 376.82 -8.76 -51.84 By element: Atomic # 1 Polarization: 2.75 SS G_CDS: -7.82 Total: -5.07 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: 0.22 Total: -4.44 kcal Atomic # 7 Polarization: -53.51 SS G_CDS: -0.19 Total: -53.70 kcal Atomic # 8 Polarization: -39.53 SS G_CDS: -2.11 Total: -41.64 kcal Atomic # 14 Polarization: 23.72 SS G_CDS: -4.13 Total: 19.59 kcal Atomic # 16 Polarization: 28.17 SS G_CDS: -0.43 Total: 27.74 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -43.08 -8.76 -51.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567693249.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.961 kcal (2) G-P(sol) polarization free energy of solvation -43.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds