Wall clock time and date at job start Tue Mar 31 2020 16:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47140 * 2 1 4 4 N 1.46503 * 109.47415 * 180.02562 * 3 2 1 5 5 C 1.34772 * 119.99891 * 90.00254 * 4 3 2 6 6 O 1.21282 * 119.99755 * 180.02562 * 5 4 3 7 7 C 1.50693 * 119.99944 * 359.72650 * 5 4 3 8 8 S 1.81404 * 109.46964 * 180.27604 * 7 5 4 9 9 O 1.42101 * 108.57764 * 294.48742 * 8 7 5 10 10 O 1.42102 * 108.57982 * 65.51521 * 8 7 5 11 11 C 1.81398 * 101.92236 * 179.97438 * 8 7 5 12 12 C 1.52999 * 109.47536 * 179.97438 * 11 8 7 13 13 C 1.46502 * 119.99866 * 270.00426 * 4 3 2 14 14 H 1.09002 * 110.64146 * 359.29924 * 13 4 3 15 15 C 1.55161 * 110.71905 * 122.43722 * 13 4 3 16 16 C 1.55120 * 101.48332 * 153.73316 * 15 13 4 17 17 N 1.47422 * 104.94625 * 323.22429 * 16 15 13 18 18 C 1.36939 * 125.65225 * 204.03929 * 17 16 15 19 19 H 1.07999 * 120.00207 * 161.47440 * 18 17 16 20 20 C 1.38813 * 119.99590 * 341.47937 * 18 17 16 21 21 N 1.31619 * 119.99608 * 157.63269 * 20 18 17 22 22 Si 1.86792 * 120.00302 * 337.63133 * 20 18 17 23 23 H 1.48500 * 109.47159 * 84.53399 * 22 20 18 24 24 H 1.48497 * 109.47151 * 204.53878 * 22 20 18 25 25 H 1.48506 * 109.46928 * 324.54123 * 22 20 18 26 26 C 1.47025 * 108.70466 * 24.00206 * 17 16 15 27 27 H 1.08995 * 109.47372 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46906 * 299.99674 * 1 2 3 29 29 H 1.09001 * 109.47347 * 59.99285 * 1 2 3 30 30 H 1.08998 * 109.47274 * 240.00626 * 2 1 3 31 31 H 1.08991 * 109.47581 * 120.00183 * 2 1 3 32 32 H 1.09003 * 109.46955 * 60.00356 * 3 2 1 33 33 H 1.09001 * 109.47584 * 300.00569 * 3 2 1 34 34 H 1.09004 * 109.47191 * 300.27139 * 7 5 4 35 35 H 1.09004 * 109.47320 * 60.27826 * 7 5 4 36 36 H 1.09000 * 109.47393 * 300.00512 * 11 8 7 37 37 H 1.09003 * 109.47124 * 59.99912 * 11 8 7 38 38 H 1.09003 * 109.46910 * 59.99874 * 12 11 8 39 39 H 1.08995 * 109.47347 * 180.02562 * 12 11 8 40 40 H 1.08997 * 109.46810 * 300.00456 * 12 11 8 41 41 H 1.08993 * 111.00643 * 271.93710 * 15 13 4 42 42 H 1.08996 * 111.00173 * 35.79094 * 15 13 4 43 43 H 1.08998 * 110.42076 * 204.29549 * 16 15 13 44 44 H 1.08999 * 110.21049 * 82.04580 * 16 15 13 45 45 H 0.97002 * 119.99869 * 180.02562 * 21 20 18 46 46 H 1.09000 * 109.88376 * 239.52875 * 26 17 16 47 47 H 1.09001 * 110.01287 * 118.42880 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1783 1.4428 -1.1681 6 8 5.3911 1.4424 -1.1686 7 6 3.4243 1.4368 -2.4728 8 16 4.6025 1.4305 -3.8521 9 8 5.3211 2.6564 -3.8393 10 8 5.3211 0.2048 -3.8281 11 6 3.4964 1.4231 -5.2898 12 6 4.3287 1.4177 -6.5736 13 6 4.2380 1.4423 1.2678 14 1 3.5471 1.4546 2.1109 15 6 5.1867 0.2175 1.3534 16 6 6.2811 0.7414 2.3199 17 7 6.4452 2.1648 1.9727 18 6 7.5654 2.9183 2.2020 19 1 7.7148 3.8418 1.6625 20 6 8.5090 2.4949 3.1279 21 7 9.7477 2.9332 3.0525 22 14 8.0207 1.3031 4.4809 23 1 8.0958 -0.0878 3.9663 24 1 8.9458 1.4556 5.6324 25 1 6.6321 1.5942 4.9195 26 6 5.2072 2.6412 1.3386 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6766 1.9564 -0.8899 34 1 2.7977 0.5465 -2.5262 35 1 2.7976 2.3266 -2.5344 36 1 2.8679 0.5331 -5.2601 37 1 2.8673 2.3129 -5.2688 38 1 4.9581 0.5280 -6.5948 39 1 3.6640 1.4137 -7.4375 40 1 4.9568 2.3080 -6.6030 41 1 4.6721 -0.6467 1.7731 42 1 5.6097 -0.0179 0.3768 43 1 7.2157 0.2028 2.1639 44 1 5.9510 0.6388 3.3536 45 1 10.4072 2.6371 3.6993 46 1 5.4215 3.0044 0.3335 47 1 4.7660 3.4398 1.9350 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567693249.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:05 Heat of formation + Delta-G solvation = -102.321537 kcal Electronic energy + Delta-G solvation = -28379.266811 eV Core-core repulsion = 24496.557423 eV Total energy + Delta-G solvation = -3882.709388 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.61826 -38.86354 -38.00381 -37.31691 -36.96464 -34.72449 -34.00193 -33.51645 -32.14697 -30.91155 -29.38198 -26.97323 -26.18080 -24.94740 -23.28046 -22.56982 -22.29358 -20.20581 -19.71475 -19.06609 -18.33445 -18.10230 -17.35861 -17.24751 -16.98829 -16.74846 -16.30327 -15.85488 -15.50902 -15.41914 -15.18574 -14.89792 -14.70455 -14.34220 -14.11679 -13.98484 -13.91855 -13.69551 -13.39790 -13.10411 -13.06380 -13.04175 -12.99019 -12.93104 -12.74238 -12.62993 -12.47323 -12.35491 -12.14953 -12.06304 -11.92989 -11.82231 -11.53453 -11.44831 -11.28774 -10.90878 -10.80268 -9.73658 -9.06577 -8.20626 -5.47396 -1.08893 1.28328 1.34881 1.40690 1.46250 1.73989 1.83875 2.40318 2.76490 2.97822 3.05752 3.30141 3.41383 3.67815 3.76143 3.78762 3.85018 3.95036 4.04674 4.13696 4.19373 4.27978 4.31321 4.40940 4.44162 4.51642 4.65143 4.73141 4.74630 4.77047 4.84627 4.87012 4.92574 4.94676 5.06130 5.14190 5.20863 5.29685 5.34358 5.54631 5.62777 5.65093 6.06276 6.24032 6.73039 6.99105 7.50486 8.06915 9.00229 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012699 B = 0.004119 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.371538 B = 6796.041595 C = 8440.569621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.145 4.145 3 C 0.095 3.905 4 N -0.588 5.588 5 C 0.515 3.485 6 O -0.569 6.569 7 C -0.640 4.640 8 S 2.408 3.592 9 O -0.987 6.987 10 O -0.983 6.983 11 C -0.575 4.575 12 C -0.167 4.167 13 C 0.149 3.851 14 H 0.138 0.862 15 C -0.134 4.134 16 C 0.108 3.892 17 N -0.621 5.621 18 C -0.239 4.239 19 H 0.043 0.957 20 C -0.043 4.043 21 N -0.961 5.961 22 Si 0.960 3.040 23 H -0.272 1.272 24 H -0.303 1.303 25 H -0.256 1.256 26 C 0.123 3.877 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.099 0.901 33 H 0.115 0.885 34 H 0.206 0.794 35 H 0.208 0.792 36 H 0.177 0.823 37 H 0.175 0.825 38 H 0.063 0.937 39 H 0.116 0.884 40 H 0.061 0.939 41 H 0.107 0.893 42 H 0.063 0.937 43 H 0.028 0.972 44 H 0.040 0.960 45 H 0.263 0.737 46 H 0.019 0.981 47 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.640 -7.854 -15.543 36.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.183 4.183 3 C -0.026 4.026 4 N -0.319 5.319 5 C 0.303 3.697 6 O -0.449 6.449 7 C -0.769 4.769 8 S 2.594 3.406 9 O -0.984 6.984 10 O -0.980 6.980 11 C -0.709 4.709 12 C -0.226 4.226 13 C 0.045 3.955 14 H 0.155 0.845 15 C -0.173 4.173 16 C -0.017 4.017 17 N -0.348 5.348 18 C -0.368 4.368 19 H 0.061 0.939 20 C -0.237 4.237 21 N -0.608 5.608 22 Si 0.787 3.213 23 H -0.198 1.198 24 H -0.231 1.231 25 H -0.180 1.180 26 C -0.002 4.002 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.117 0.883 33 H 0.133 0.867 34 H 0.224 0.776 35 H 0.225 0.775 36 H 0.195 0.805 37 H 0.193 0.807 38 H 0.082 0.918 39 H 0.134 0.866 40 H 0.080 0.920 41 H 0.126 0.874 42 H 0.081 0.919 43 H 0.047 0.953 44 H 0.058 0.942 45 H 0.072 0.928 46 H 0.037 0.963 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -29.887 -7.776 -15.397 34.507 hybrid contribution 0.413 -0.051 0.852 0.949 sum -29.473 -7.827 -14.544 33.786 Atomic orbital electron populations 1.21684 0.93239 1.02442 1.03025 1.21995 0.97466 0.96025 1.02846 1.22249 0.75508 0.98611 1.06249 1.47893 1.08438 1.71834 1.03753 1.20103 0.87076 0.76320 0.86238 1.90994 1.16022 1.50192 1.87643 1.30782 1.18821 1.17658 1.09643 1.08225 0.79055 0.73774 0.79548 1.93531 1.70673 1.47403 1.86785 1.93511 1.70565 1.47133 1.86778 1.30016 1.13819 1.15718 1.11298 1.21743 1.00910 1.03168 0.96737 1.22065 0.93251 0.93612 0.86560 0.84471 1.23112 0.96181 0.98149 0.99830 1.22063 0.97643 0.84946 0.97079 1.44596 1.12529 1.06569 1.71106 1.18525 0.96221 1.04754 1.17307 0.93947 1.25763 0.94861 1.01655 1.01449 1.70022 1.02411 1.50293 1.38071 0.85735 0.77804 0.78931 0.78833 1.19831 1.23089 1.18046 1.21747 0.86398 0.96155 0.95945 0.92416 0.92258 0.90760 0.91377 0.92381 0.88294 0.86684 0.77640 0.77498 0.80545 0.80730 0.91758 0.86565 0.91971 0.87435 0.91875 0.95347 0.94206 0.92777 0.96264 0.94531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.64 9.91 71.98 0.71 0.08 16 2 C -0.14 -1.22 6.26 30.59 0.19 -1.03 16 3 C 0.09 0.99 5.19 86.38 0.45 1.44 16 4 N -0.59 -13.81 2.54 -791.23 -2.01 -15.82 16 5 C 0.52 15.01 6.79 87.66 0.60 15.61 16 6 O -0.57 -25.39 11.98 -0.17 0.00 -25.39 16 7 C -0.64 -8.90 4.84 71.23 0.34 -8.55 16 8 S 2.41 54.91 3.96 -56.49 -0.22 54.68 16 9 O -0.99 -34.61 17.95 -125.75 -2.26 -36.87 16 10 O -0.98 -32.80 17.94 -125.75 -2.26 -35.05 16 11 C -0.58 -3.84 6.52 71.98 0.47 -3.37 16 12 C -0.17 -1.82 9.92 71.98 0.71 -1.11 16 13 C 0.15 4.66 3.43 46.18 0.16 4.81 16 14 H 0.14 3.20 7.86 -2.39 -0.02 3.18 16 15 C -0.13 -4.86 6.44 32.06 0.21 -4.66 16 16 C 0.11 5.07 4.69 86.93 0.41 5.48 16 17 N -0.62 -34.14 3.21 -691.56 -2.22 -36.36 16 18 C -0.24 -15.71 10.57 84.03 0.89 -14.82 16 19 H 0.04 3.07 8.06 -2.91 -0.02 3.05 16 20 C -0.04 -2.82 5.43 84.86 0.46 -2.36 16 21 N -0.96 -66.38 13.97 21.65 0.30 -66.08 16 22 Si 0.96 50.29 24.27 68.60 1.66 51.95 16 23 H -0.27 -13.59 6.49 99.48 0.65 -12.94 16 24 H -0.30 -15.69 7.11 99.48 0.71 -14.99 16 25 H -0.26 -12.38 6.66 99.48 0.66 -11.72 16 26 C 0.12 5.49 6.48 86.73 0.56 6.05 16 27 H 0.06 0.29 8.14 -2.39 -0.02 0.27 16 28 H 0.06 0.27 8.14 -2.39 -0.02 0.25 16 29 H 0.07 0.07 8.14 -2.39 -0.02 0.05 16 30 H 0.07 0.53 7.20 -2.39 -0.02 0.52 16 31 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.10 0.84 7.95 -2.39 -0.02 0.82 16 33 H 0.12 0.41 6.45 -2.39 -0.02 0.39 16 34 H 0.21 0.66 7.16 -2.39 -0.02 0.64 16 35 H 0.21 0.67 7.41 -2.39 -0.02 0.65 16 36 H 0.18 -0.26 8.14 -2.39 -0.02 -0.28 16 37 H 0.17 -0.16 8.14 -2.39 -0.02 -0.18 16 38 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.06 0.85 8.14 -2.39 -0.02 0.84 16 41 H 0.11 2.94 8.14 -2.39 -0.02 2.92 16 42 H 0.06 2.68 6.03 -2.39 -0.01 2.67 16 43 H 0.03 1.50 6.63 -2.39 -0.02 1.48 16 44 H 0.04 1.77 5.58 -2.39 -0.01 1.76 16 45 H 0.26 17.05 8.31 -92.71 -0.77 16.28 16 46 H 0.02 0.97 6.07 -2.39 -0.01 0.96 16 47 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -111.23 376.82 0.01 -111.22 By element: Atomic # 1 Polarization: -0.71 SS G_CDS: 0.84 Total: 0.13 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: 6.16 Total: -2.43 kcal Atomic # 7 Polarization: -114.33 SS G_CDS: -3.92 Total: -118.25 kcal Atomic # 8 Polarization: -92.79 SS G_CDS: -4.52 Total: -97.31 kcal Atomic # 14 Polarization: 50.29 SS G_CDS: 1.66 Total: 51.95 kcal Atomic # 16 Polarization: 54.91 SS G_CDS: -0.22 Total: 54.68 kcal Total: -111.23 0.01 -111.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567693249.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.903 kcal (2) G-P(sol) polarization free energy of solvation -111.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -111.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds