Wall clock time and date at job start Tue Mar 31 2020 16:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46785 * 2 1 4 4 N 1.46506 * 109.46880 * 180.02562 * 3 2 1 5 5 C 1.34781 * 119.99820 * 270.00198 * 4 3 2 6 6 O 1.21277 * 119.99801 * 179.97438 * 5 4 3 7 7 C 1.50698 * 120.00076 * 359.97438 * 5 4 3 8 8 H 1.09005 * 109.46748 * 40.00237 * 7 5 4 9 9 C 1.52995 * 109.47178 * 280.00563 * 7 5 4 10 10 S 1.81397 * 109.47028 * 160.00149 * 7 5 4 11 11 C 1.81401 * 101.92001 * 180.02562 * 10 7 5 12 12 O 1.42097 * 108.58128 * 294.48718 * 10 7 5 13 13 O 1.42096 * 108.57844 * 65.51383 * 10 7 5 14 14 C 1.46497 * 120.00078 * 89.99791 * 4 3 2 15 15 H 1.08994 * 110.64204 * 356.85943 * 14 4 3 16 16 C 1.55154 * 110.72021 * 120.00059 * 14 4 3 17 17 C 1.54908 * 101.58289 * 153.86481 * 16 14 4 18 18 N 1.47425 * 104.92961 * 322.93718 * 17 16 14 19 19 C 1.36938 * 125.65179 * 204.15650 * 18 17 16 20 20 H 1.07995 * 120.00281 * 180.02562 * 19 18 17 21 21 C 1.38810 * 119.99650 * 0.02562 * 19 18 17 22 22 N 1.31621 * 120.00025 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00113 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47190 * 89.99819 * 23 21 19 25 25 H 1.48500 * 109.47472 * 210.00112 * 23 21 19 26 26 H 1.48507 * 109.46699 * 329.99987 * 23 21 19 27 27 C 1.47290 * 108.55742 * 24.15407 * 18 17 16 28 28 H 1.09001 * 109.47438 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47787 * 300.00231 * 1 2 3 30 30 H 1.09002 * 109.47154 * 60.00044 * 1 2 3 31 31 H 1.09001 * 109.46925 * 240.00041 * 2 1 3 32 32 H 1.08998 * 109.46923 * 119.99503 * 2 1 3 33 33 H 1.09001 * 109.47356 * 60.00305 * 3 2 1 34 34 H 1.09002 * 109.47239 * 299.99904 * 3 2 1 35 35 H 1.09005 * 109.47015 * 299.99511 * 9 7 5 36 36 H 1.09003 * 109.47702 * 59.99905 * 9 7 5 37 37 H 1.09003 * 109.47217 * 180.02562 * 9 7 5 38 38 H 1.08998 * 109.47608 * 59.99749 * 11 10 7 39 39 H 1.09003 * 109.47229 * 180.02562 * 11 10 7 40 40 H 1.09002 * 109.47022 * 299.99825 * 11 10 7 41 41 H 1.09008 * 111.00345 * 35.78951 * 16 14 4 42 42 H 1.09000 * 111.03743 * 271.95917 * 16 14 4 43 43 H 1.09002 * 110.36632 * 81.83114 * 17 16 14 44 44 H 1.08995 * 110.36781 * 204.04351 * 17 16 14 45 45 H 0.97001 * 119.99611 * 180.02562 * 22 21 19 46 46 H 1.09004 * 109.85762 * 239.50064 * 27 18 17 47 47 H 1.08995 * 110.00297 * 118.43011 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1793 1.4424 1.1664 6 8 5.3921 1.4419 1.1658 7 6 3.4264 1.4427 2.4717 8 1 2.5627 0.7824 2.3931 9 6 2.9550 2.8634 2.7882 10 16 4.5162 0.8574 3.7985 11 6 3.4234 0.9387 5.2442 12 8 4.8391 -0.5042 3.5517 13 8 5.5661 1.7993 3.9705 14 6 4.2369 1.4427 -1.2696 15 1 3.5467 1.3869 -2.1113 16 6 5.1397 2.6995 -1.3824 17 6 6.2501 2.1999 -2.3401 18 7 6.4736 0.7928 -1.9613 19 6 7.6238 0.0814 -2.1760 20 1 7.6883 -0.9493 -1.8601 21 6 8.7070 0.6852 -2.7997 22 7 8.6286 1.9416 -3.1842 23 14 10.2759 -0.2852 -3.0932 24 1 10.2038 -0.9542 -4.4171 25 1 11.4402 0.6362 -3.0671 26 1 10.4310 -1.3092 -2.0289 27 6 5.2531 0.2821 -1.3140 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3635 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 3.8187 3.5237 2.8669 36 1 2.3001 3.2151 1.9910 37 1 2.4107 2.8637 3.7327 38 1 2.5600 0.2930 5.0838 39 1 3.9664 0.6068 6.1292 40 1 3.0874 1.9655 5.3884 41 1 5.5543 2.9712 -0.4116 42 1 4.5937 3.5355 -1.8195 43 1 5.9158 2.2655 -3.3755 44 1 7.1620 2.7801 -2.1992 45 1 9.3855 2.3634 -3.6204 46 1 5.4820 -0.0491 -0.3010 47 1 4.8439 -0.5470 -1.8913 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664673713.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:51 Heat of formation + Delta-G solvation = -61.822442 kcal Electronic energy + Delta-G solvation = -28923.859819 eV Core-core repulsion = 25042.906603 eV Total energy + Delta-G solvation = -3880.953216 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -40.40663 -37.07510 -36.91365 -36.18288 -35.94880 -33.66412 -33.08419 -31.61054 -29.74377 -29.00127 -27.35217 -26.29943 -25.12872 -24.11228 -22.00254 -21.26579 -20.05014 -19.18041 -18.60658 -17.40464 -17.18305 -16.71222 -16.19721 -15.77606 -15.56450 -15.04906 -14.84060 -14.54334 -14.39856 -13.97041 -13.75759 -13.57004 -13.54597 -13.20702 -13.15411 -12.72869 -12.41179 -12.29819 -12.19487 -12.08232 -12.02865 -11.95690 -11.77576 -11.54772 -11.35302 -11.14494 -10.96231 -10.87156 -10.81038 -10.70069 -10.67616 -10.43090 -9.98363 -9.76398 -9.46479 -9.28026 -8.50998 -8.39015 -6.64419 -5.48743 -2.88514 -0.24380 2.53426 2.62929 2.88092 3.52118 3.56944 3.60076 3.63629 3.81695 4.14108 4.29040 4.48164 4.51907 4.64040 4.69644 4.75338 4.79168 4.94564 5.03229 5.13250 5.19309 5.32571 5.34640 5.41887 5.44375 5.59693 5.66504 5.68292 5.75912 5.80382 5.82060 5.92373 6.04917 6.26134 6.57206 6.60257 6.68171 6.82549 7.21560 7.42895 7.64573 7.79379 8.00664 8.19806 8.52787 9.38659 9.99466 10.64354 11.55618 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012568 B = 0.004303 C = 0.003628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2227.404839 B = 6504.916330 C = 7715.645338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.150 4.150 3 C 0.101 3.899 4 N -0.593 5.593 5 C 0.535 3.465 6 O -0.490 6.490 7 C -0.620 4.620 8 H 0.151 0.849 9 C -0.138 4.138 10 S 2.446 3.554 11 C -0.665 4.665 12 O -0.924 6.924 13 O -0.908 6.908 14 C 0.134 3.866 15 H 0.092 0.908 16 C -0.155 4.155 17 C 0.157 3.843 18 N -0.595 5.595 19 C -0.211 4.211 20 H 0.076 0.924 21 C -0.014 4.014 22 N -0.925 5.925 23 Si 0.914 3.086 24 H -0.291 1.291 25 H -0.291 1.291 26 H -0.281 1.281 27 C 0.128 3.872 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.128 0.872 39 H 0.132 0.868 40 H 0.130 0.870 41 H 0.077 0.923 42 H 0.054 0.946 43 H 0.010 0.990 44 H 0.108 0.892 45 H 0.250 0.750 46 H 0.044 0.956 47 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.560 1.729 14.120 26.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.189 4.189 3 C -0.022 4.022 4 N -0.325 5.325 5 C 0.319 3.681 6 O -0.363 6.363 7 C -0.728 4.728 8 H 0.169 0.831 9 C -0.196 4.196 10 S 2.622 3.378 11 C -0.814 4.814 12 O -0.921 6.921 13 O -0.905 6.905 14 C 0.031 3.969 15 H 0.110 0.890 16 C -0.195 4.195 17 C 0.032 3.968 18 N -0.321 5.321 19 C -0.340 4.340 20 H 0.094 0.906 21 C -0.209 4.209 22 N -0.575 5.575 23 Si 0.745 3.255 24 H -0.218 1.218 25 H -0.217 1.217 26 H -0.207 1.207 27 C 0.001 3.999 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.105 0.895 36 H 0.103 0.897 37 H 0.096 0.904 38 H 0.146 0.854 39 H 0.150 0.850 40 H 0.149 0.851 41 H 0.096 0.904 42 H 0.073 0.927 43 H 0.028 0.972 44 H 0.126 0.874 45 H 0.061 0.939 46 H 0.062 0.938 47 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -20.815 1.489 13.956 25.105 hybrid contribution -0.460 -0.383 -0.196 0.630 sum -21.276 1.106 13.760 25.362 Atomic orbital electron populations 1.21710 0.95054 1.02090 1.01854 1.22063 0.96061 0.97287 1.03457 1.21831 0.79786 0.97053 1.03522 1.47832 1.06128 1.72797 1.05736 1.19028 0.87384 0.78000 0.83679 1.91006 1.12227 1.46898 1.86185 1.30790 1.17525 1.09992 1.14528 0.83124 1.21664 1.03632 0.90927 1.03364 1.07585 0.76874 0.75880 0.77458 1.30447 1.17809 1.11574 1.21568 1.93608 1.81099 1.33475 1.83941 1.93609 1.48625 1.63950 1.84316 1.22301 0.93382 0.98567 0.82647 0.89046 1.23435 0.98238 0.95086 1.02694 1.21853 0.96675 0.86151 0.92145 1.44325 1.10036 1.09291 1.68438 1.19076 0.89310 0.94420 1.31176 0.90618 1.24742 0.98267 0.96497 1.01354 1.69787 1.30335 1.10923 1.46430 0.86068 0.83026 0.78661 0.77779 1.21833 1.21713 1.20697 1.21581 0.87639 0.93192 0.97487 0.92347 0.92731 0.92417 0.90792 0.91721 0.90067 0.89906 0.89463 0.89720 0.90366 0.85364 0.84985 0.85133 0.90400 0.92735 0.97234 0.87404 0.93934 0.93796 0.96532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.91 37.16 0.37 -0.54 16 2 C -0.15 -1.29 6.12 -26.73 -0.16 -1.46 16 3 C 0.10 0.93 4.97 -4.04 -0.02 0.91 16 4 N -0.59 -8.59 2.54 -164.03 -0.42 -9.01 16 5 C 0.54 8.70 5.96 -10.98 -0.07 8.63 16 6 O -0.49 -10.85 11.99 -3.35 -0.04 -10.89 16 7 C -0.62 -6.40 2.26 -27.89 -0.06 -6.47 16 8 H 0.15 0.97 6.12 -51.92 -0.32 0.65 16 9 C -0.14 -0.98 8.66 37.16 0.32 -0.66 16 10 S 2.45 30.04 4.32 -107.50 -0.46 29.58 16 11 C -0.67 -3.72 10.17 101.05 1.03 -2.70 16 12 O -0.92 -15.31 18.10 -57.83 -1.05 -16.36 16 13 O -0.91 -15.17 17.40 -62.66 -1.09 -16.26 16 14 C 0.13 2.43 3.44 -66.10 -0.23 2.21 16 15 H 0.09 1.45 7.89 -51.93 -0.41 1.04 16 16 C -0.16 -3.21 6.44 -24.58 -0.16 -3.37 16 17 C 0.16 4.09 5.89 -2.53 -0.01 4.07 16 18 N -0.59 -16.62 3.40 -169.86 -0.58 -17.20 16 19 C -0.21 -6.41 10.28 -15.06 -0.15 -6.56 16 20 H 0.08 2.25 7.83 -52.49 -0.41 1.84 16 21 C -0.01 -0.42 5.49 -17.43 -0.10 -0.51 16 22 N -0.93 -28.57 10.09 55.49 0.56 -28.01 16 23 Si 0.91 23.68 29.55 -169.99 -5.02 18.65 16 24 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16 25 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 26 H -0.28 -7.20 7.11 56.52 0.40 -6.79 16 27 C 0.13 2.97 6.47 -2.92 -0.02 2.95 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.57 7.16 -51.93 -0.37 0.20 16 33 H 0.08 0.53 4.77 -51.93 -0.25 0.28 16 34 H 0.08 0.68 7.97 -51.93 -0.41 0.27 16 35 H 0.09 0.78 8.06 -51.93 -0.42 0.36 16 36 H 0.08 0.51 6.33 -51.93 -0.33 0.18 16 37 H 0.08 0.24 6.56 -51.93 -0.34 -0.10 16 38 H 0.13 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.13 0.67 8.14 -51.92 -0.42 0.25 16 40 H 0.13 0.41 6.87 -51.92 -0.36 0.05 16 41 H 0.08 1.77 6.25 -51.92 -0.32 1.44 16 42 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 44 H 0.11 3.19 5.86 -51.93 -0.30 2.88 16 45 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 46 H 0.04 1.11 5.83 -51.93 -0.30 0.81 16 47 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 373.85 15.07 5.63 5.63 Total: -1.00 -41.50 373.85 -9.22 -50.71 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -7.49 Total: -3.37 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: 0.74 Total: -3.49 kcal Atomic # 7 Polarization: -53.79 SS G_CDS: -0.43 Total: -54.22 kcal Atomic # 8 Polarization: -41.33 SS G_CDS: -2.18 Total: -43.50 kcal Atomic # 14 Polarization: 23.68 SS G_CDS: -5.02 Total: 18.65 kcal Atomic # 16 Polarization: 30.04 SS G_CDS: -0.46 Total: 29.58 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -41.50 -9.22 -50.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664673713.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.109 kcal (2) G-P(sol) polarization free energy of solvation -41.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds