Wall clock time and date at job start Tue Mar 31 2020 16:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46785 * 2 1 4 4 N 1.46506 * 109.46880 * 180.02562 * 3 2 1 5 5 C 1.34781 * 119.99820 * 270.00198 * 4 3 2 6 6 O 1.21277 * 119.99801 * 179.97438 * 5 4 3 7 7 C 1.50698 * 120.00076 * 359.97438 * 5 4 3 8 8 H 1.09005 * 109.46748 * 40.00237 * 7 5 4 9 9 C 1.52995 * 109.47178 * 280.00563 * 7 5 4 10 10 S 1.81397 * 109.47028 * 160.00149 * 7 5 4 11 11 C 1.81401 * 101.92001 * 180.02562 * 10 7 5 12 12 O 1.42097 * 108.58128 * 294.48718 * 10 7 5 13 13 O 1.42096 * 108.57844 * 65.51383 * 10 7 5 14 14 C 1.46497 * 120.00078 * 89.99791 * 4 3 2 15 15 H 1.08994 * 110.64204 * 356.85943 * 14 4 3 16 16 C 1.55154 * 110.72021 * 120.00059 * 14 4 3 17 17 C 1.54908 * 101.58289 * 153.86481 * 16 14 4 18 18 N 1.47425 * 104.92961 * 322.93718 * 17 16 14 19 19 C 1.36938 * 125.65179 * 204.15650 * 18 17 16 20 20 H 1.07995 * 120.00281 * 180.02562 * 19 18 17 21 21 C 1.38810 * 119.99650 * 0.02562 * 19 18 17 22 22 N 1.31621 * 120.00025 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00113 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47190 * 89.99819 * 23 21 19 25 25 H 1.48500 * 109.47472 * 210.00112 * 23 21 19 26 26 H 1.48507 * 109.46699 * 329.99987 * 23 21 19 27 27 C 1.47290 * 108.55742 * 24.15407 * 18 17 16 28 28 H 1.09001 * 109.47438 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47787 * 300.00231 * 1 2 3 30 30 H 1.09002 * 109.47154 * 60.00044 * 1 2 3 31 31 H 1.09001 * 109.46925 * 240.00041 * 2 1 3 32 32 H 1.08998 * 109.46923 * 119.99503 * 2 1 3 33 33 H 1.09001 * 109.47356 * 60.00305 * 3 2 1 34 34 H 1.09002 * 109.47239 * 299.99904 * 3 2 1 35 35 H 1.09005 * 109.47015 * 299.99511 * 9 7 5 36 36 H 1.09003 * 109.47702 * 59.99905 * 9 7 5 37 37 H 1.09003 * 109.47217 * 180.02562 * 9 7 5 38 38 H 1.08998 * 109.47608 * 59.99749 * 11 10 7 39 39 H 1.09003 * 109.47229 * 180.02562 * 11 10 7 40 40 H 1.09002 * 109.47022 * 299.99825 * 11 10 7 41 41 H 1.09008 * 111.00345 * 35.78951 * 16 14 4 42 42 H 1.09000 * 111.03743 * 271.95917 * 16 14 4 43 43 H 1.09002 * 110.36632 * 81.83114 * 17 16 14 44 44 H 1.08995 * 110.36781 * 204.04351 * 17 16 14 45 45 H 0.97001 * 119.99611 * 180.02562 * 22 21 19 46 46 H 1.09004 * 109.85762 * 239.50064 * 27 18 17 47 47 H 1.08995 * 110.00297 * 118.43011 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1793 1.4424 1.1664 6 8 5.3921 1.4419 1.1658 7 6 3.4264 1.4427 2.4717 8 1 2.5627 0.7824 2.3931 9 6 2.9550 2.8634 2.7882 10 16 4.5162 0.8574 3.7985 11 6 3.4234 0.9387 5.2442 12 8 4.8391 -0.5042 3.5517 13 8 5.5661 1.7993 3.9705 14 6 4.2369 1.4427 -1.2696 15 1 3.5467 1.3869 -2.1113 16 6 5.1397 2.6995 -1.3824 17 6 6.2501 2.1999 -2.3401 18 7 6.4736 0.7928 -1.9613 19 6 7.6238 0.0814 -2.1760 20 1 7.6883 -0.9493 -1.8601 21 6 8.7070 0.6852 -2.7997 22 7 8.6286 1.9416 -3.1842 23 14 10.2759 -0.2852 -3.0932 24 1 10.2038 -0.9542 -4.4171 25 1 11.4402 0.6362 -3.0671 26 1 10.4310 -1.3092 -2.0289 27 6 5.2531 0.2821 -1.3140 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3635 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 3.8187 3.5237 2.8669 36 1 2.3001 3.2151 1.9910 37 1 2.4107 2.8637 3.7327 38 1 2.5600 0.2930 5.0838 39 1 3.9664 0.6068 6.1292 40 1 3.0874 1.9655 5.3884 41 1 5.5543 2.9712 -0.4116 42 1 4.5937 3.5355 -1.8195 43 1 5.9158 2.2655 -3.3755 44 1 7.1620 2.7801 -2.1992 45 1 9.3855 2.3634 -3.6204 46 1 5.4820 -0.0491 -0.3010 47 1 4.8439 -0.5470 -1.8913 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664673713.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:48 Heat of formation + Delta-G solvation = -95.531971 kcal Electronic energy + Delta-G solvation = -28925.321573 eV Core-core repulsion = 25042.906603 eV Total energy + Delta-G solvation = -3882.414970 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 2.45 seconds Orbital eigenvalues (eV) -41.67193 -38.68085 -38.05910 -37.33633 -36.97956 -34.95185 -34.16554 -33.21358 -31.01257 -30.26801 -29.02795 -27.11296 -26.71556 -25.44747 -23.04412 -22.40008 -22.07957 -20.42091 -19.59584 -19.00584 -18.30619 -18.20282 -17.14519 -16.96078 -16.77851 -16.55777 -16.17163 -15.90774 -15.60519 -15.40942 -14.84168 -14.64624 -14.25053 -14.13213 -13.98418 -13.90702 -13.62650 -13.47880 -13.32214 -13.16862 -13.09099 -13.05875 -12.98636 -12.81192 -12.77567 -12.65638 -12.49383 -12.21390 -12.06360 -11.99655 -11.96830 -11.86963 -11.61486 -11.48675 -11.35582 -10.77385 -10.71143 -9.69988 -8.88562 -7.79790 -5.23122 -1.07325 1.39285 1.42540 1.44029 1.52540 1.74099 1.80934 2.46972 2.78130 3.01764 3.25732 3.30353 3.66709 3.71503 3.82545 3.82972 3.98409 4.04708 4.09922 4.17568 4.21747 4.25269 4.39582 4.55042 4.58262 4.63630 4.66840 4.72407 4.74831 4.90987 4.94954 4.96778 5.00905 5.03013 5.20307 5.26176 5.32276 5.38731 5.51125 5.59904 5.69209 5.77182 6.26920 6.30552 7.02948 7.08603 7.75438 8.39448 9.21993 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012568 B = 0.004303 C = 0.003628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2227.404839 B = 6504.916330 C = 7715.645338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.151 4.151 3 C 0.092 3.908 4 N -0.587 5.587 5 C 0.519 3.481 6 O -0.564 6.564 7 C -0.600 4.600 8 H 0.198 0.802 9 C -0.143 4.143 10 S 2.406 3.594 11 C -0.618 4.618 12 O -0.992 6.992 13 O -0.978 6.978 14 C 0.152 3.848 15 H 0.126 0.874 16 C -0.139 4.139 17 C 0.159 3.841 18 N -0.619 5.619 19 C -0.240 4.240 20 H 0.069 0.931 21 C -0.067 4.067 22 N -0.947 5.947 23 Si 0.982 3.018 24 H -0.277 1.277 25 H -0.288 1.288 26 H -0.278 1.278 27 C 0.124 3.876 28 H 0.056 0.944 29 H 0.079 0.921 30 H 0.062 0.938 31 H 0.049 0.951 32 H 0.061 0.939 33 H 0.120 0.880 34 H 0.102 0.898 35 H 0.059 0.941 36 H 0.105 0.895 37 H 0.134 0.866 38 H 0.171 0.829 39 H 0.144 0.856 40 H 0.170 0.830 41 H 0.052 0.948 42 H 0.093 0.907 43 H 0.000 1.000 44 H 0.066 0.934 45 H 0.248 0.752 46 H 0.016 0.984 47 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.487 2.299 15.880 31.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.189 4.189 3 C -0.028 4.028 4 N -0.318 5.318 5 C 0.306 3.694 6 O -0.443 6.443 7 C -0.710 4.710 8 H 0.215 0.785 9 C -0.201 4.201 10 S 2.591 3.409 11 C -0.773 4.773 12 O -0.989 6.989 13 O -0.975 6.975 14 C 0.048 3.952 15 H 0.143 0.857 16 C -0.178 4.178 17 C 0.033 3.967 18 N -0.345 5.345 19 C -0.369 4.369 20 H 0.087 0.913 21 C -0.259 4.259 22 N -0.597 5.597 23 Si 0.809 3.191 24 H -0.203 1.203 25 H -0.215 1.215 26 H -0.204 1.204 27 C -0.003 4.003 28 H 0.075 0.925 29 H 0.098 0.902 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.138 0.862 34 H 0.120 0.880 35 H 0.078 0.922 36 H 0.123 0.877 37 H 0.153 0.847 38 H 0.189 0.811 39 H 0.162 0.838 40 H 0.188 0.812 41 H 0.071 0.929 42 H 0.111 0.889 43 H 0.018 0.982 44 H 0.084 0.916 45 H 0.057 0.943 46 H 0.034 0.966 47 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -25.771 2.044 15.688 30.240 hybrid contribution 0.963 -0.565 -0.670 1.302 sum -24.808 1.479 15.018 29.037 Atomic orbital electron populations 1.21677 0.92533 1.02534 1.03354 1.22056 0.98118 0.96509 1.02255 1.22320 0.75906 0.98140 1.06471 1.47898 1.08301 1.71748 1.03858 1.20088 0.87042 0.76336 0.85968 1.90986 1.15842 1.49918 1.87511 1.30636 1.17265 1.13352 1.09726 0.78531 1.21915 1.03415 0.87670 1.07080 1.08134 0.78627 0.73958 0.80146 1.30086 1.16372 1.15399 1.15436 1.93525 1.83609 1.36028 1.85777 1.93529 1.53608 1.64612 1.85722 1.21983 0.92931 0.94375 0.85918 0.85654 1.23187 0.97250 0.97338 1.00039 1.21629 0.96850 0.85201 0.92974 1.44620 1.10939 1.10205 1.68692 1.19385 0.91106 0.94695 1.31750 0.91332 1.25632 1.01353 0.97673 1.01250 1.70056 1.30918 1.12141 1.46618 0.85035 0.78692 0.77304 0.78035 1.20344 1.21450 1.20351 1.21708 0.87631 0.95560 0.95354 0.92524 0.90234 0.91915 0.93204 0.92058 0.86189 0.87972 0.92160 0.87656 0.84738 0.81130 0.83808 0.81170 0.92936 0.88859 0.98191 0.91636 0.94256 0.96563 0.96117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 54. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 9.91 71.98 0.71 -0.38 16 2 C -0.15 -2.10 6.12 30.59 0.19 -1.91 16 3 C 0.09 1.31 4.97 86.38 0.43 1.74 16 4 N -0.59 -16.21 2.54 -791.25 -2.01 -18.22 16 5 C 0.52 16.96 5.96 87.66 0.52 17.48 16 6 O -0.56 -26.95 11.99 5.50 0.07 -26.89 16 7 C -0.60 -10.89 2.26 29.85 0.07 -10.83 16 8 H 0.20 1.55 6.12 -2.39 -0.01 1.53 16 9 C -0.14 -1.39 8.66 71.98 0.62 -0.77 16 10 S 2.41 58.74 4.32 -56.49 -0.24 58.50 16 11 C -0.62 -3.60 10.17 113.37 1.15 -2.44 16 12 O -0.99 -34.94 18.10 -127.37 -2.30 -37.24 16 13 O -0.98 -35.06 17.40 -122.75 -2.14 -37.19 16 14 C 0.15 5.51 3.44 46.18 0.16 5.67 16 15 H 0.13 3.70 7.89 -2.39 -0.02 3.69 16 16 C -0.14 -5.86 6.44 31.98 0.21 -5.66 16 17 C 0.16 8.71 5.89 86.85 0.51 9.23 16 18 N -0.62 -36.65 3.40 -691.31 -2.35 -39.00 16 19 C -0.24 -15.43 10.28 84.03 0.86 -14.57 16 20 H 0.07 4.34 7.83 -2.91 -0.02 4.32 16 21 C -0.07 -4.21 5.49 84.86 0.47 -3.74 16 22 N -0.95 -61.36 10.09 21.65 0.22 -61.14 16 23 Si 0.98 50.61 29.55 68.60 2.03 52.64 16 24 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 25 H -0.29 -14.65 7.11 99.48 0.71 -13.95 16 26 H -0.28 -14.05 7.11 99.48 0.71 -13.35 16 27 C 0.12 6.05 6.47 86.68 0.56 6.61 16 28 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.08 0.24 8.14 -2.39 -0.02 0.22 16 30 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.06 0.89 7.16 -2.39 -0.02 0.87 16 33 H 0.12 0.80 4.77 -2.39 -0.01 0.79 16 34 H 0.10 1.14 7.97 -2.39 -0.02 1.12 16 35 H 0.06 0.98 8.06 -2.38 -0.02 0.96 16 36 H 0.10 0.63 6.33 -2.39 -0.02 0.62 16 37 H 0.13 -0.20 6.56 -2.39 -0.02 -0.22 16 38 H 0.17 -0.26 8.14 -2.39 -0.02 -0.28 16 39 H 0.14 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.17 -0.21 6.87 -2.39 -0.02 -0.23 16 41 H 0.05 2.51 6.25 -2.38 -0.01 2.49 16 42 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 43 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 44 H 0.07 4.15 5.86 -2.39 -0.01 4.14 16 45 H 0.25 15.41 8.31 -92.71 -0.77 14.64 16 46 H 0.02 0.89 5.83 -2.38 -0.01 0.88 16 47 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -106.81 373.85 0.69 -106.12 By element: Atomic # 1 Polarization: 1.05 SS G_CDS: 0.96 Total: 2.01 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: 6.46 Total: 0.43 kcal Atomic # 7 Polarization: -114.22 SS G_CDS: -4.14 Total: -118.37 kcal Atomic # 8 Polarization: -96.95 SS G_CDS: -4.37 Total: -101.33 kcal Atomic # 14 Polarization: 50.61 SS G_CDS: 2.03 Total: 52.64 kcal Atomic # 16 Polarization: 58.74 SS G_CDS: -0.24 Total: 58.50 kcal Total: -106.81 0.69 -106.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664673713.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.586 kcal (2) G-P(sol) polarization free energy of solvation -106.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -106.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.46 seconds