Wall clock time and date at job start Tue Mar 31 2020 16:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47030 * 2 1 4 4 N 1.46501 * 109.47141 * 174.94374 * 3 2 1 5 5 C 1.34779 * 120.00025 * 263.89661 * 4 3 2 6 6 O 1.21281 * 119.99416 * 186.05056 * 5 4 3 7 7 C 1.50697 * 119.99906 * 6.05558 * 5 4 3 8 8 H 1.09002 * 109.47274 * 329.92286 * 7 5 4 9 9 C 1.52994 * 109.47328 * 89.93249 * 7 5 4 10 10 S 1.81408 * 109.46754 * 209.92851 * 7 5 4 11 11 C 1.81403 * 101.91983 * 184.99731 * 10 7 5 12 12 O 1.42097 * 108.57681 * 299.48621 * 10 7 5 13 13 O 1.42104 * 108.57700 * 70.51428 * 10 7 5 14 14 C 1.46501 * 119.99537 * 84.17492 * 4 3 2 15 15 H 1.08993 * 110.89085 * 9.60727 * 14 4 3 16 16 C 1.55159 * 111.00190 * 245.72728 * 14 4 3 17 17 C 1.54322 * 102.94175 * 277.43016 * 16 14 4 18 18 N 1.47018 * 107.27389 * 337.80806 * 17 16 14 19 19 C 1.36939 * 125.65001 * 178.98845 * 18 17 16 20 20 H 1.08003 * 119.99615 * 179.97438 * 19 18 17 21 21 C 1.38814 * 119.99997 * 359.97301 * 19 18 17 22 22 N 1.31611 * 119.99859 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99832 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47023 * 89.99983 * 23 21 19 25 25 H 1.48506 * 109.46791 * 210.00056 * 23 21 19 26 26 H 1.48500 * 109.46957 * 329.99686 * 23 21 19 27 27 C 1.47430 * 108.70257 * 358.93874 * 18 17 16 28 28 H 1.08994 * 109.46815 * 60.00144 * 1 2 3 29 29 H 1.09000 * 109.46940 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47014 * 299.99880 * 1 2 3 31 31 H 1.08998 * 109.47207 * 239.99889 * 2 1 3 32 32 H 1.09005 * 109.47214 * 119.99538 * 2 1 3 33 33 H 1.09004 * 109.46981 * 54.94460 * 3 2 1 34 34 H 1.08996 * 109.47108 * 294.94860 * 3 2 1 35 35 H 1.09002 * 109.47028 * 305.11934 * 9 7 5 36 36 H 1.08992 * 109.47401 * 65.11832 * 9 7 5 37 37 H 1.09003 * 109.47436 * 185.12311 * 9 7 5 38 38 H 1.09003 * 109.46508 * 60.00215 * 11 10 7 39 39 H 1.08997 * 109.46950 * 180.02562 * 11 10 7 40 40 H 1.09000 * 109.47233 * 300.00524 * 11 10 7 41 41 H 1.09003 * 110.71828 * 35.79327 * 16 14 4 42 42 H 1.08995 * 110.71991 * 158.88973 * 16 14 4 43 43 H 1.09001 * 109.88246 * 97.22644 * 17 16 14 44 44 H 1.09003 * 109.87995 * 218.23303 * 17 16 14 45 45 H 0.97000 * 120.00116 * 180.02562 * 22 21 19 46 46 H 1.08999 * 110.36586 * 265.29343 * 27 18 17 47 47 H 1.08999 * 110.36515 * 142.96951 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5000 1.4444 0.1217 5 6 4.0752 1.6033 1.3302 6 8 5.2797 1.7149 1.4183 7 6 3.2219 1.6423 2.5716 8 1 2.2431 2.0549 2.3270 9 6 3.0549 0.2240 3.1205 10 16 4.0218 2.6845 3.8226 11 6 2.9241 2.4656 5.2502 12 8 5.2893 2.1236 4.1358 13 8 3.9479 4.0386 3.3982 14 6 4.3346 1.2795 -1.0710 15 1 3.7325 1.3375 -1.9777 16 6 5.1280 -0.0527 -1.0146 17 6 6.3474 0.3080 -0.1403 18 7 6.5157 1.7670 -0.2063 19 6 7.4763 2.4901 0.4491 20 1 7.5164 3.5633 0.3344 21 6 8.3984 1.8438 1.2608 22 7 8.3497 0.5360 1.4001 23 14 9.7083 2.8303 2.1554 24 1 9.1957 3.2404 3.4874 25 1 10.9245 1.9958 2.3284 26 1 10.0462 4.0389 1.3614 27 6 5.4796 2.3226 -1.0959 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8901 33 1 1.6046 1.9818 0.8413 34 1 1.7525 1.9296 -0.9317 35 1 2.6583 -0.4238 2.3387 36 1 4.0225 -0.1544 3.4497 37 1 2.3647 0.2397 3.9640 38 1 2.8941 1.4117 5.5270 39 1 3.2984 3.0516 6.0895 40 1 1.9201 2.8020 4.9915 41 1 4.5338 -0.8358 -0.5436 42 1 5.4423 -0.3569 -2.0130 43 1 6.1682 0.0017 0.8903 44 1 7.2387 -0.1881 -0.5246 45 1 8.9938 0.0843 1.9676 46 1 5.8688 2.4345 -2.1079 47 1 5.1275 3.2815 -0.7157 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664673714.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:55 Heat of formation + Delta-G solvation = -15.483586 kcal Electronic energy + Delta-G solvation = -30292.944214 eV Core-core repulsion = 26414.000402 eV Total energy + Delta-G solvation = -3878.943812 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 4.45 seconds Orbital eigenvalues (eV) -40.04424 -36.58370 -36.37457 -35.92297 -35.42369 -33.03201 -32.78343 -31.38117 -29.30151 -28.93670 -27.32489 -25.87911 -24.81723 -24.06192 -21.92760 -21.01963 -19.79230 -18.58638 -17.92388 -17.23139 -16.78648 -16.43390 -15.82460 -15.41495 -15.33123 -14.87794 -14.60112 -14.28757 -13.92246 -13.54344 -13.49420 -13.36013 -13.13900 -13.02293 -12.68964 -12.53657 -12.22350 -11.97466 -11.87803 -11.73452 -11.57475 -11.53526 -11.45091 -11.37602 -11.31109 -10.87749 -10.64240 -10.62094 -10.58847 -10.54865 -10.08854 -9.88617 -9.83837 -9.62209 -9.34509 -8.75388 -8.31629 -7.83499 -6.19561 -5.34909 -2.51714 0.19273 3.04272 3.26159 3.37470 3.65575 3.70467 3.75704 4.09912 4.26533 4.60540 4.68313 4.76201 4.83869 4.86206 4.91957 5.10328 5.15379 5.24114 5.31019 5.41497 5.45045 5.47654 5.55502 5.65922 5.70053 5.72861 5.76060 5.85079 5.93106 5.97582 6.04590 6.09398 6.26774 6.35071 6.55757 6.63265 6.68307 6.80221 7.27255 7.83973 7.91527 7.93883 8.17504 8.61413 8.99012 9.58104 10.19895 10.84077 11.78186 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011181 B = 0.007032 C = 0.004914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2503.628179 B = 3980.923455 C = 5696.155225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.149 4.149 3 C 0.112 3.888 4 N -0.603 5.603 5 C 0.485 3.515 6 O -0.382 6.382 7 C -0.612 4.612 8 H 0.138 0.862 9 C -0.134 4.134 10 S 2.424 3.576 11 C -0.670 4.670 12 O -0.893 6.893 13 O -0.941 6.941 14 C 0.133 3.867 15 H 0.083 0.917 16 C -0.159 4.159 17 C 0.187 3.813 18 N -0.561 5.561 19 C -0.186 4.186 20 H 0.069 0.931 21 C -0.001 4.001 22 N -0.910 5.910 23 Si 0.897 3.103 24 H -0.288 1.288 25 H -0.294 1.294 26 H -0.286 1.286 27 C 0.126 3.874 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.070 0.930 38 H 0.126 0.874 39 H 0.124 0.876 40 H 0.121 0.879 41 H 0.056 0.944 42 H 0.061 0.939 43 H 0.059 0.941 44 H 0.032 0.968 45 H 0.246 0.754 46 H 0.026 0.974 47 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.226 -2.275 0.736 20.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.187 4.187 3 C -0.012 4.012 4 N -0.341 5.341 5 C 0.266 3.734 6 O -0.245 6.245 7 C -0.721 4.721 8 H 0.156 0.844 9 C -0.192 4.192 10 S 2.600 3.400 11 C -0.817 4.817 12 O -0.889 6.889 13 O -0.938 6.938 14 C 0.029 3.971 15 H 0.101 0.899 16 C -0.199 4.199 17 C 0.062 3.938 18 N -0.286 5.286 19 C -0.316 4.316 20 H 0.087 0.913 21 C -0.197 4.197 22 N -0.559 5.559 23 Si 0.729 3.271 24 H -0.215 1.215 25 H -0.221 1.221 26 H -0.212 1.212 27 C -0.002 4.002 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.088 0.912 38 H 0.145 0.855 39 H 0.143 0.857 40 H 0.139 0.861 41 H 0.075 0.925 42 H 0.080 0.920 43 H 0.077 0.923 44 H 0.050 0.950 45 H 0.056 0.944 46 H 0.043 0.957 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -18.592 -1.724 0.926 18.695 hybrid contribution -0.579 -0.031 0.663 0.881 sum -19.171 -1.755 1.590 19.317 Atomic orbital electron populations 1.21718 0.95624 1.01689 1.01700 1.22149 0.95530 0.97909 1.03161 1.21588 0.81053 0.96328 1.02257 1.47706 1.05093 1.74786 1.06477 1.19436 0.89220 0.81509 0.83247 1.91756 1.09568 1.39708 1.83506 1.30648 1.13272 1.13378 1.14813 0.84415 1.21632 1.04219 0.91838 1.01525 1.09076 0.77162 0.76106 0.77640 1.30496 1.17619 1.11483 1.22144 1.93669 1.34149 1.78932 1.82156 1.93542 1.86942 1.32289 1.81000 1.22358 0.91620 0.97474 0.85655 0.89934 1.23391 0.99705 0.95859 1.00908 1.21142 0.91187 0.84467 0.96954 1.44176 1.31447 1.02301 1.50711 1.18843 1.02860 0.90105 1.19803 0.91336 1.24537 0.99531 0.95631 1.00018 1.69911 1.37500 1.06488 1.42012 0.86316 0.81280 0.78788 0.80691 1.21500 1.22120 1.21171 1.21826 0.89003 0.94971 0.94400 0.92706 0.92702 0.92796 0.91517 0.91136 0.90845 0.90965 0.90099 0.89690 0.91155 0.85502 0.85698 0.86056 0.92482 0.92026 0.92332 0.95013 0.94387 0.95691 0.94406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 98. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.91 37.16 0.37 -0.69 16 2 C -0.15 -1.39 6.25 -26.73 -0.17 -1.56 16 3 C 0.11 1.22 5.26 -4.04 -0.02 1.20 16 4 N -0.60 -9.57 2.56 -163.67 -0.42 -9.99 16 5 C 0.49 9.23 6.18 -10.99 -0.07 9.16 16 6 O -0.38 -9.53 7.57 -9.29 -0.07 -9.60 16 7 C -0.61 -8.63 2.65 -27.89 -0.07 -8.71 16 8 H 0.14 1.38 5.71 -51.92 -0.30 1.08 16 9 C -0.13 -1.55 8.74 37.15 0.32 -1.23 16 10 S 2.42 40.50 4.59 -107.50 -0.49 40.01 16 11 C -0.67 -6.62 10.02 101.05 1.01 -5.61 16 12 O -0.89 -20.12 17.09 -64.26 -1.10 -21.22 16 13 O -0.94 -18.89 18.10 -57.83 -1.05 -19.93 16 14 C 0.13 2.28 3.80 -65.78 -0.25 2.03 16 15 H 0.08 1.13 7.92 -51.93 -0.41 0.72 16 16 C -0.16 -2.99 6.52 -24.90 -0.16 -3.15 16 17 C 0.19 4.72 4.22 -3.07 -0.01 4.71 16 18 N -0.56 -14.90 1.73 -170.07 -0.29 -15.19 16 19 C -0.19 -5.59 8.74 -15.06 -0.13 -5.72 16 20 H 0.07 2.06 7.83 -52.48 -0.41 1.64 16 21 C 0.00 -0.02 5.49 -17.43 -0.10 -0.12 16 22 N -0.91 -28.64 10.31 55.49 0.57 -28.06 16 23 Si 0.90 24.73 29.55 -169.99 -5.02 19.71 16 24 H -0.29 -8.17 7.11 56.52 0.40 -7.77 16 25 H -0.29 -8.00 7.11 56.52 0.40 -7.60 16 26 H -0.29 -7.59 7.11 56.52 0.40 -7.18 16 27 C 0.13 2.71 6.18 -2.53 -0.02 2.69 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.71 5.28 -51.93 -0.27 0.43 16 33 H 0.07 0.70 5.64 -51.93 -0.29 0.40 16 34 H 0.07 0.69 8.02 -51.93 -0.42 0.28 16 35 H 0.08 0.86 5.28 -51.93 -0.27 0.59 16 36 H 0.08 1.20 8.05 -51.93 -0.42 0.78 16 37 H 0.07 0.51 6.70 -51.93 -0.35 0.17 16 38 H 0.13 0.99 6.90 -51.92 -0.36 0.63 16 39 H 0.12 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.12 0.84 8.14 -51.92 -0.42 0.42 16 41 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.06 1.67 5.86 -51.93 -0.30 1.36 16 44 H 0.03 0.90 7.50 -51.93 -0.39 0.51 16 45 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 46 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 47 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 367.21 15.07 5.53 5.53 Total: -1.00 -40.31 367.21 -9.19 -49.50 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: -7.56 Total: -3.75 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: 0.71 Total: -7.00 kcal Atomic # 7 Polarization: -53.11 SS G_CDS: -0.14 Total: -53.25 kcal Atomic # 8 Polarization: -48.54 SS G_CDS: -2.22 Total: -50.75 kcal Atomic # 14 Polarization: 24.73 SS G_CDS: -5.02 Total: 19.71 kcal Atomic # 16 Polarization: 40.50 SS G_CDS: -0.49 Total: 40.01 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -40.31 -9.19 -49.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664673714.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.018 kcal (2) G-P(sol) polarization free energy of solvation -40.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.45 seconds