Wall clock time and date at job start Tue Mar 31 2020 16:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47030 * 2 1 4 4 N 1.46501 * 109.47141 * 174.94374 * 3 2 1 5 5 C 1.34779 * 120.00025 * 263.89661 * 4 3 2 6 6 O 1.21281 * 119.99416 * 186.05056 * 5 4 3 7 7 C 1.50697 * 119.99906 * 6.05558 * 5 4 3 8 8 H 1.09002 * 109.47274 * 329.92286 * 7 5 4 9 9 C 1.52994 * 109.47328 * 89.93249 * 7 5 4 10 10 S 1.81408 * 109.46754 * 209.92851 * 7 5 4 11 11 C 1.81403 * 101.91983 * 184.99731 * 10 7 5 12 12 O 1.42097 * 108.57681 * 299.48621 * 10 7 5 13 13 O 1.42104 * 108.57700 * 70.51428 * 10 7 5 14 14 C 1.46501 * 119.99537 * 84.17492 * 4 3 2 15 15 H 1.08993 * 110.89085 * 9.60727 * 14 4 3 16 16 C 1.55159 * 111.00190 * 245.72728 * 14 4 3 17 17 C 1.54322 * 102.94175 * 277.43016 * 16 14 4 18 18 N 1.47018 * 107.27389 * 337.80806 * 17 16 14 19 19 C 1.36939 * 125.65001 * 178.98845 * 18 17 16 20 20 H 1.08003 * 119.99615 * 179.97438 * 19 18 17 21 21 C 1.38814 * 119.99997 * 359.97301 * 19 18 17 22 22 N 1.31611 * 119.99859 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99832 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47023 * 89.99983 * 23 21 19 25 25 H 1.48506 * 109.46791 * 210.00056 * 23 21 19 26 26 H 1.48500 * 109.46957 * 329.99686 * 23 21 19 27 27 C 1.47430 * 108.70257 * 358.93874 * 18 17 16 28 28 H 1.08994 * 109.46815 * 60.00144 * 1 2 3 29 29 H 1.09000 * 109.46940 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47014 * 299.99880 * 1 2 3 31 31 H 1.08998 * 109.47207 * 239.99889 * 2 1 3 32 32 H 1.09005 * 109.47214 * 119.99538 * 2 1 3 33 33 H 1.09004 * 109.46981 * 54.94460 * 3 2 1 34 34 H 1.08996 * 109.47108 * 294.94860 * 3 2 1 35 35 H 1.09002 * 109.47028 * 305.11934 * 9 7 5 36 36 H 1.08992 * 109.47401 * 65.11832 * 9 7 5 37 37 H 1.09003 * 109.47436 * 185.12311 * 9 7 5 38 38 H 1.09003 * 109.46508 * 60.00215 * 11 10 7 39 39 H 1.08997 * 109.46950 * 180.02562 * 11 10 7 40 40 H 1.09000 * 109.47233 * 300.00524 * 11 10 7 41 41 H 1.09003 * 110.71828 * 35.79327 * 16 14 4 42 42 H 1.08995 * 110.71991 * 158.88973 * 16 14 4 43 43 H 1.09001 * 109.88246 * 97.22644 * 17 16 14 44 44 H 1.09003 * 109.87995 * 218.23303 * 17 16 14 45 45 H 0.97000 * 120.00116 * 180.02562 * 22 21 19 46 46 H 1.08999 * 110.36586 * 265.29343 * 27 18 17 47 47 H 1.08999 * 110.36515 * 142.96951 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5000 1.4444 0.1217 5 6 4.0752 1.6033 1.3302 6 8 5.2797 1.7149 1.4183 7 6 3.2219 1.6423 2.5716 8 1 2.2431 2.0549 2.3270 9 6 3.0549 0.2240 3.1205 10 16 4.0218 2.6845 3.8226 11 6 2.9241 2.4656 5.2502 12 8 5.2893 2.1236 4.1358 13 8 3.9479 4.0386 3.3982 14 6 4.3346 1.2795 -1.0710 15 1 3.7325 1.3375 -1.9777 16 6 5.1280 -0.0527 -1.0146 17 6 6.3474 0.3080 -0.1403 18 7 6.5157 1.7670 -0.2063 19 6 7.4763 2.4901 0.4491 20 1 7.5164 3.5633 0.3344 21 6 8.3984 1.8438 1.2608 22 7 8.3497 0.5360 1.4001 23 14 9.7083 2.8303 2.1554 24 1 9.1957 3.2404 3.4874 25 1 10.9245 1.9958 2.3284 26 1 10.0462 4.0389 1.3614 27 6 5.4796 2.3226 -1.0959 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8901 33 1 1.6046 1.9818 0.8413 34 1 1.7525 1.9296 -0.9317 35 1 2.6583 -0.4238 2.3387 36 1 4.0225 -0.1544 3.4497 37 1 2.3647 0.2397 3.9640 38 1 2.8941 1.4117 5.5270 39 1 3.2984 3.0516 6.0895 40 1 1.9201 2.8020 4.9915 41 1 4.5338 -0.8358 -0.5436 42 1 5.4423 -0.3569 -2.0130 43 1 6.1682 0.0017 0.8903 44 1 7.2387 -0.1881 -0.5246 45 1 8.9938 0.0843 1.9676 46 1 5.8688 2.4345 -2.1079 47 1 5.1275 3.2815 -0.7157 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664673714.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:54 Heat of formation + Delta-G solvation = -48.058829 kcal Electronic energy + Delta-G solvation = -30294.356783 eV Core-core repulsion = 26414.000402 eV Total energy + Delta-G solvation = -3880.356380 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.45958 -38.14164 -37.93109 -37.13026 -36.86323 -34.61720 -33.89519 -32.93907 -30.84266 -30.22981 -28.96417 -26.79374 -26.46200 -25.62306 -22.96782 -22.23478 -21.71582 -19.99257 -19.25912 -18.79437 -18.24232 -17.98818 -17.08731 -16.88144 -16.65778 -16.44148 -16.07651 -15.60734 -15.55528 -15.30708 -14.53091 -14.28825 -14.02344 -13.98281 -13.80738 -13.69563 -13.67237 -13.54754 -13.06763 -13.03592 -12.98365 -12.89165 -12.84541 -12.79857 -12.75064 -12.62635 -12.25734 -11.98243 -11.92846 -11.89245 -11.74001 -11.63740 -11.40086 -11.38378 -11.03280 -10.51224 -10.24019 -9.33302 -8.26771 -7.62855 -4.82995 -0.98576 1.35179 1.45315 1.46637 1.81801 1.98317 2.09911 2.61085 2.92250 3.10773 3.49797 3.57851 3.73822 3.83969 3.86736 4.00764 4.06423 4.19715 4.21956 4.23524 4.32893 4.37978 4.47361 4.60114 4.65970 4.72188 4.76845 4.88022 4.90424 4.93270 4.98637 5.04041 5.07731 5.13505 5.17398 5.36985 5.43663 5.55359 5.64430 5.84909 5.96011 6.07214 6.44624 6.63556 7.36310 7.63251 8.07131 8.68834 9.49261 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011181 B = 0.007032 C = 0.004914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2503.628179 B = 3980.923455 C = 5696.155225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.144 4.144 3 C 0.102 3.898 4 N -0.600 5.600 5 C 0.467 3.533 6 O -0.453 6.453 7 C -0.592 4.592 8 H 0.190 0.810 9 C -0.137 4.137 10 S 2.397 3.603 11 C -0.625 4.625 12 O -0.975 6.975 13 O -0.992 6.992 14 C 0.148 3.852 15 H 0.136 0.864 16 C -0.142 4.142 17 C 0.201 3.799 18 N -0.578 5.578 19 C -0.191 4.191 20 H 0.054 0.946 21 C -0.057 4.057 22 N -0.940 5.940 23 Si 0.940 3.060 24 H -0.307 1.307 25 H -0.289 1.289 26 H -0.270 1.270 27 C 0.119 3.881 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.047 0.953 37 H 0.128 0.872 38 H 0.161 0.839 39 H 0.140 0.860 40 H 0.172 0.828 41 H 0.073 0.927 42 H 0.082 0.918 43 H 0.017 0.983 44 H -0.017 1.017 45 H 0.233 0.767 46 H 0.035 0.965 47 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.335 -2.579 1.009 26.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.182 4.182 3 C -0.019 4.019 4 N -0.335 5.335 5 C 0.249 3.751 6 O -0.321 6.321 7 C -0.704 4.704 8 H 0.207 0.793 9 C -0.194 4.194 10 S 2.583 3.417 11 C -0.779 4.779 12 O -0.972 6.972 13 O -0.989 6.989 14 C 0.043 3.957 15 H 0.153 0.847 16 C -0.181 4.181 17 C 0.076 3.924 18 N -0.303 5.303 19 C -0.321 4.321 20 H 0.072 0.928 21 C -0.250 4.250 22 N -0.592 5.592 23 Si 0.772 3.228 24 H -0.236 1.236 25 H -0.215 1.215 26 H -0.195 1.195 27 C -0.008 4.008 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.114 0.886 36 H 0.066 0.934 37 H 0.146 0.854 38 H 0.179 0.821 39 H 0.158 0.842 40 H 0.190 0.810 41 H 0.092 0.908 42 H 0.100 0.900 43 H 0.035 0.965 44 H 0.001 0.999 45 H 0.042 0.958 46 H 0.053 0.947 47 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -24.665 -1.996 1.075 24.769 hybrid contribution 0.883 0.129 0.767 1.177 sum -23.781 -1.866 1.842 23.925 Atomic orbital electron populations 1.21681 0.93462 1.02319 1.02766 1.22079 0.97221 0.96284 1.02640 1.22012 0.77418 0.98115 1.04380 1.47779 1.07320 1.73393 1.05045 1.20291 0.89169 0.80303 0.85295 1.91753 1.12818 1.42694 1.84873 1.30506 1.14069 1.14639 1.11192 0.79276 1.21806 1.03813 0.89823 1.04000 1.08308 0.77910 0.75230 0.80243 1.30110 1.16843 1.14562 1.16375 1.93614 1.40050 1.79689 1.83805 1.93491 1.88078 1.34503 1.82859 1.22249 0.91164 0.94018 0.88242 0.84674 1.23199 0.97076 0.97301 1.00510 1.20763 0.92093 0.83723 0.95823 1.44195 1.32132 1.02824 1.51123 1.18898 1.03674 0.89682 1.19837 0.92818 1.25104 1.01768 0.96500 1.01592 1.70125 1.38272 1.07341 1.43450 0.85609 0.79779 0.78467 0.78967 1.23550 1.21525 1.19499 1.22027 0.89722 0.95565 0.93448 0.92012 0.92362 0.91415 0.92109 0.91798 0.88848 0.88758 0.88644 0.93378 0.85377 0.82064 0.84206 0.80970 0.90840 0.89986 0.96475 0.99886 0.95788 0.94724 0.96126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.91 71.98 0.71 -0.50 16 2 C -0.14 -1.95 6.25 30.60 0.19 -1.76 16 3 C 0.10 1.70 5.26 86.38 0.45 2.16 16 4 N -0.60 -17.52 2.56 -790.12 -2.02 -19.54 16 5 C 0.47 17.55 6.18 87.66 0.54 18.10 16 6 O -0.45 -23.86 7.57 11.16 0.08 -23.78 16 7 C -0.59 -15.03 2.65 29.84 0.08 -14.95 16 8 H 0.19 2.66 5.71 -2.39 -0.01 2.65 16 9 C -0.14 -2.66 8.74 71.98 0.63 -2.03 16 10 S 2.40 78.25 4.59 -56.49 -0.26 77.99 16 11 C -0.63 -8.64 10.02 113.37 1.14 -7.50 16 12 O -0.97 -46.73 17.09 -121.22 -2.07 -48.81 16 13 O -0.99 -40.22 18.10 -127.37 -2.31 -42.52 16 14 C 0.15 4.76 3.80 46.38 0.18 4.94 16 15 H 0.14 3.04 7.92 -2.39 -0.02 3.02 16 16 C -0.14 -5.22 6.52 31.78 0.21 -5.02 16 17 C 0.20 10.81 4.22 86.73 0.37 11.17 16 18 N -0.58 -32.64 1.73 -691.98 -1.20 -33.83 16 19 C -0.19 -12.35 8.74 84.03 0.73 -11.62 16 20 H 0.05 3.49 7.83 -2.91 -0.02 3.47 16 21 C -0.06 -3.80 5.49 84.86 0.47 -3.34 16 22 N -0.94 -64.50 10.31 21.65 0.22 -64.28 16 23 Si 0.94 54.53 29.55 68.60 2.03 56.56 16 24 H -0.31 -18.50 7.11 99.48 0.71 -17.79 16 25 H -0.29 -16.24 7.11 99.48 0.71 -15.53 16 26 H -0.27 -14.68 7.11 99.48 0.71 -13.97 16 27 C 0.12 5.22 6.18 86.85 0.54 5.75 16 28 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.06 0.48 8.14 -2.39 -0.02 0.47 16 30 H 0.07 0.41 8.14 -2.38 -0.02 0.39 16 31 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.06 0.97 5.28 -2.38 -0.01 0.95 16 33 H 0.09 1.17 5.64 -2.39 -0.01 1.16 16 34 H 0.09 1.24 8.02 -2.39 -0.02 1.22 16 35 H 0.10 1.64 5.28 -2.39 -0.01 1.63 16 36 H 0.05 1.34 8.05 -2.39 -0.02 1.32 16 37 H 0.13 0.98 6.70 -2.39 -0.02 0.96 16 38 H 0.16 1.34 6.90 -2.39 -0.02 1.32 16 39 H 0.14 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.17 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 42 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 43 H 0.02 1.06 5.86 -2.39 -0.01 1.05 16 44 H -0.02 -1.05 7.50 -2.39 -0.02 -1.06 16 45 H 0.23 15.76 8.31 -92.71 -0.77 14.99 16 46 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 47 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -106.77 367.21 1.67 -105.10 By element: Atomic # 1 Polarization: -3.24 SS G_CDS: 0.96 Total: -2.28 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: 6.23 Total: -4.61 kcal Atomic # 7 Polarization: -114.66 SS G_CDS: -3.00 Total: -117.65 kcal Atomic # 8 Polarization: -110.82 SS G_CDS: -4.29 Total: -115.11 kcal Atomic # 14 Polarization: 54.53 SS G_CDS: 2.03 Total: 56.56 kcal Atomic # 16 Polarization: 78.25 SS G_CDS: -0.26 Total: 77.99 kcal Total: -106.77 1.67 -105.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664673714.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.040 kcal (2) G-P(sol) polarization free energy of solvation -106.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -105.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds