Wall clock time and date at job start Tue Mar 31 2020 16:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47108 * 2 1 4 4 N 1.46492 * 109.47347 * 300.00258 * 3 2 1 5 5 C 1.36935 * 120.00235 * 179.72132 * 4 3 2 6 6 H 1.08009 * 119.99971 * 0.27573 * 5 4 3 7 7 C 1.38815 * 120.00363 * 180.27568 * 5 4 3 8 8 N 1.31619 * 119.99821 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00041 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47216 * 90.00186 * 9 7 5 11 11 H 1.48498 * 109.47109 * 210.00371 * 9 7 5 12 12 H 1.48498 * 109.47134 * 330.00104 * 9 7 5 13 13 N 1.46503 * 109.47302 * 240.00395 * 2 1 3 14 14 C 1.34771 * 120.00375 * 173.96121 * 13 2 1 15 15 O 1.21520 * 119.99829 * 5.27103 * 14 13 2 16 16 C 1.48164 * 119.99963 * 185.27154 * 14 13 2 17 17 C 1.39253 * 119.65521 * 179.72773 * 16 14 13 18 18 C 1.39760 * 118.90015 * 179.71348 * 17 16 14 19 19 C 1.48148 * 120.88841 * 180.27828 * 18 17 16 20 20 N 1.34771 * 119.99993 * 180.27373 * 19 18 17 21 21 O 1.21521 * 119.99574 * 0.27764 * 19 18 17 22 22 C 1.39805 * 118.22247 * 0.54976 * 18 17 16 23 23 C 1.38506 * 119.19001 * 359.73047 * 22 18 17 24 24 N 1.31458 * 121.03253 * 359.97438 * 23 22 18 25 25 C 1.52997 * 109.47430 * 120.00329 * 2 1 3 26 26 C 1.53005 * 117.49961 * 123.08058 * 25 2 1 27 27 C 1.53000 * 60.00015 * 252.51214 * 26 25 2 28 28 H 1.09000 * 109.47547 * 59.99387 * 1 2 3 29 29 H 1.09002 * 109.46969 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47021 * 299.99130 * 1 2 3 31 31 H 1.08999 * 109.47163 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.46470 * 60.00532 * 3 2 1 33 33 H 0.96998 * 120.00162 * 0.02562 * 4 3 2 34 34 H 0.96999 * 119.99679 * 180.02562 * 8 7 5 35 35 H 0.97005 * 119.99514 * 353.96178 * 13 2 1 36 36 H 1.08002 * 120.55034 * 359.97438 * 17 16 14 37 37 H 0.97002 * 120.00116 * 0.02562 * 20 19 18 38 38 H 0.96996 * 119.99812 * 179.97438 * 20 19 18 39 39 H 1.07998 * 120.40471 * 179.76078 * 22 18 17 40 40 H 1.07997 * 119.47741 * 180.02562 * 23 22 18 41 41 H 1.09002 * 115.54931 * 268.79063 * 25 2 1 42 42 H 1.09002 * 117.49970 * 359.97438 * 26 25 2 43 43 H 1.09001 * 117.49723 * 145.02463 * 26 25 2 44 44 H 1.09005 * 117.49909 * 252.51432 * 27 26 25 45 45 H 1.09000 * 117.50441 * 107.48806 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5516 2.1332 -1.1961 5 6 1.8777 3.4458 -1.4099 6 1 2.4987 3.9707 -0.6989 7 6 1.4103 4.1019 -2.5403 8 7 0.6532 3.4624 -3.4065 9 14 1.8557 5.8924 -2.8323 10 1 3.1162 5.9678 -3.6137 11 1 0.7641 6.5572 -3.5883 12 1 2.0410 6.5756 -1.5269 13 7 2.0184 -0.6905 -1.1962 14 6 3.3373 -0.7084 -1.4728 15 8 4.1302 -0.2357 -0.6826 16 6 3.8204 -1.3044 -2.7403 17 6 5.1842 -1.3140 -3.0214 18 6 5.6231 -1.8856 -4.2189 19 6 7.0643 -1.9251 -4.5595 20 7 7.4672 -2.4758 -5.7217 21 8 7.8832 -1.4609 -3.7909 22 6 4.6651 -2.4141 -5.0893 23 6 3.3272 -2.3584 -4.7356 24 7 2.9487 -1.8187 -3.5982 25 6 2.0400 -0.7213 1.2492 26 6 2.9740 -1.9157 1.0435 27 6 1.5318 -2.1422 1.5015 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9562 0.8901 33 1 0.9937 1.6619 -1.8344 34 1 0.3268 3.9208 -4.1966 35 1 1.3923 -1.1349 -1.7892 36 1 5.8915 -0.8905 -2.3237 37 1 6.8135 -2.8460 -6.3353 38 1 8.4108 -2.5012 -5.9448 39 1 4.9648 -2.8606 -6.0259 40 1 2.5833 -2.7656 -5.4043 41 1 2.2163 -0.0880 2.1186 42 1 3.2247 -2.1878 0.0182 43 1 3.7650 -2.0683 1.7777 44 1 1.3741 -2.4438 2.5370 45 1 0.8340 -2.5631 0.7776 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666043543.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:50 Heat of formation + Delta-G solvation = 19.313758 kcal Electronic energy + Delta-G solvation = -29119.397847 eV Core-core repulsion = 25138.811761 eV Total energy + Delta-G solvation = -3980.586086 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.02520 -40.06750 -38.96850 -37.02075 -34.92282 -34.34162 -33.39851 -32.56523 -31.73151 -30.91727 -29.44343 -26.01597 -25.40662 -24.37559 -23.59244 -22.11132 -22.01083 -21.28537 -20.46899 -18.94656 -18.69743 -17.46376 -17.23349 -17.11073 -16.05601 -15.96245 -15.61278 -15.23558 -15.16472 -14.87496 -14.47215 -14.30624 -14.08641 -13.93236 -13.63729 -13.26637 -13.17798 -12.80116 -12.17733 -12.08193 -12.00960 -11.83597 -11.24434 -11.01907 -10.81670 -10.74385 -10.69417 -10.66829 -10.20305 -10.17130 -10.10255 -10.08655 -9.95423 -9.74879 -9.60558 -9.36271 -9.28404 -8.72587 -8.52450 -6.77401 -5.67672 -2.93579 0.32053 0.73475 2.47737 2.97156 3.07244 3.38382 3.49537 3.54588 3.56156 3.91099 4.05124 4.15422 4.29702 4.50682 4.65685 4.67608 4.81497 4.92910 5.13210 5.19323 5.24454 5.44485 5.49755 5.57023 5.62982 5.69901 5.75535 5.78730 5.83860 6.06084 6.10868 6.23392 6.27868 6.35186 6.36227 6.39241 6.43899 6.65402 6.70705 6.88527 6.95981 7.19548 7.53767 7.80520 7.84549 7.97136 8.51871 8.59082 9.63254 10.21867 10.57625 11.55456 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.008345 B = 0.004582 C = 0.003413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3354.302212 B = 6109.594817 C = 8201.083962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.198 3.802 3 C 0.140 3.860 4 N -0.726 5.726 5 C -0.228 4.228 6 H 0.068 0.932 7 C -0.016 4.016 8 N -0.936 5.936 9 Si 0.904 3.096 10 H -0.292 1.292 11 H -0.293 1.293 12 H -0.282 1.282 13 N -0.692 5.692 14 C 0.578 3.422 15 O -0.512 6.512 16 C 0.091 3.909 17 C -0.056 4.056 18 C -0.102 4.102 19 C 0.566 3.434 20 N -0.848 5.848 21 O -0.524 6.524 22 C -0.127 4.127 23 C 0.098 3.902 24 N -0.435 5.435 25 C -0.143 4.143 26 C -0.159 4.159 27 C -0.185 4.185 28 H 0.075 0.925 29 H 0.053 0.947 30 H 0.072 0.928 31 H 0.051 0.949 32 H 0.024 0.976 33 H 0.382 0.618 34 H 0.252 0.748 35 H 0.406 0.594 36 H 0.161 0.839 37 H 0.402 0.598 38 H 0.408 0.592 39 H 0.142 0.858 40 H 0.169 0.831 41 H 0.109 0.891 42 H 0.089 0.911 43 H 0.087 0.913 44 H 0.088 0.912 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.002 -19.642 -3.026 20.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.113 3.887 3 C 0.012 3.988 4 N -0.371 5.371 5 C -0.360 4.360 6 H 0.086 0.914 7 C -0.212 4.212 8 N -0.585 5.585 9 Si 0.735 3.265 10 H -0.220 1.220 11 H -0.219 1.219 12 H -0.208 1.208 13 N -0.343 5.343 14 C 0.363 3.637 15 O -0.387 6.387 16 C -0.047 4.047 17 C -0.078 4.078 18 C -0.113 4.113 19 C 0.351 3.649 20 N -0.413 5.413 21 O -0.399 6.399 22 C -0.148 4.148 23 C -0.062 4.062 24 N -0.147 5.147 25 C -0.163 4.163 26 C -0.196 4.196 27 C -0.222 4.222 28 H 0.093 0.907 29 H 0.072 0.928 30 H 0.091 0.909 31 H 0.069 0.931 32 H 0.042 0.958 33 H 0.217 0.783 34 H 0.062 0.938 35 H 0.241 0.759 36 H 0.179 0.821 37 H 0.231 0.769 38 H 0.239 0.761 39 H 0.159 0.841 40 H 0.186 0.814 41 H 0.127 0.873 42 H 0.108 0.892 43 H 0.105 0.895 44 H 0.106 0.894 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.143 -18.704 -1.551 19.460 hybrid contribution 0.678 0.507 -1.645 1.850 sum 5.821 -18.197 -3.196 19.371 Atomic orbital electron populations 1.21974 0.92914 1.01443 1.04105 1.20141 0.93893 0.92598 0.82111 1.21115 0.98903 0.87725 0.91072 1.42269 1.61321 1.10368 1.23122 1.19240 1.24811 0.87490 1.04427 0.91354 1.24668 1.00836 0.98091 0.97561 1.69658 1.39711 1.35911 1.13255 0.86222 0.77308 0.85263 0.77661 1.21956 1.21908 1.20803 1.45780 1.07000 1.54946 1.26588 1.17442 0.83219 0.79076 0.84009 1.90793 1.55096 1.45365 1.47435 1.21425 0.90022 0.97826 0.95472 1.22265 0.96462 0.93346 0.95689 1.20222 0.93567 1.01338 0.96167 1.18118 0.87831 0.77437 0.81540 1.43673 1.12709 1.63422 1.21459 1.90871 1.54293 1.45446 1.49321 1.22477 0.94404 0.98447 0.99488 1.22789 0.94254 0.95776 0.93335 1.67476 1.38651 1.05807 1.02806 1.22539 1.04090 0.90282 0.99363 1.22902 0.92456 1.02173 1.02059 1.22976 0.97909 0.99779 1.01552 0.90655 0.92802 0.90927 0.93085 0.95813 0.78333 0.93802 0.75896 0.82109 0.76889 0.76061 0.84050 0.81364 0.87298 0.89232 0.89479 0.89372 0.89161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 8.19 37.16 0.30 -1.94 16 2 C 0.20 3.36 0.55 -131.82 -0.07 3.29 16 3 C 0.14 3.04 4.83 -4.04 -0.02 3.02 16 4 N -0.73 -18.80 5.17 -59.91 -0.31 -19.11 16 5 C -0.23 -6.64 9.99 -15.06 -0.15 -6.79 16 6 H 0.07 1.97 7.83 -52.48 -0.41 1.56 16 7 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 8 N -0.94 -28.63 13.06 55.49 0.72 -27.91 16 9 Si 0.90 23.27 29.55 -169.99 -5.02 18.25 16 10 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 11 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 12 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 13 N -0.69 -11.54 4.17 -48.44 -0.20 -11.74 16 14 C 0.58 10.50 5.07 -12.19 -0.06 10.44 16 15 O -0.51 -10.53 12.24 5.35 0.07 -10.46 16 16 C 0.09 1.47 6.75 -83.05 -0.56 0.91 16 17 C -0.06 -0.86 9.20 -38.64 -0.36 -1.21 16 18 C -0.10 -1.22 5.91 -104.67 -0.62 -1.83 16 19 C 0.57 6.62 8.07 -12.19 -0.10 6.52 16 20 N -0.85 -5.43 8.83 30.60 0.27 -5.16 16 21 O -0.52 -8.45 17.28 5.35 0.09 -8.36 16 22 C -0.13 -1.09 9.62 -38.90 -0.37 -1.47 16 23 C 0.10 0.98 11.17 -17.61 -0.20 0.79 16 24 N -0.44 -6.06 9.52 -9.85 -0.09 -6.15 16 25 C -0.14 -2.14 4.82 -90.62 -0.44 -2.58 16 26 C -0.16 -2.28 8.30 -26.73 -0.22 -2.51 16 27 C -0.19 -2.28 9.68 -26.73 -0.26 -2.54 16 28 H 0.07 1.33 6.86 -51.93 -0.36 0.97 16 29 H 0.05 0.68 6.96 -51.93 -0.36 0.32 16 30 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.05 1.24 5.92 -51.93 -0.31 0.93 16 32 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.38 10.20 6.35 -40.82 -0.26 9.94 16 34 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 35 H 0.41 6.20 7.82 -40.82 -0.32 5.88 16 36 H 0.16 2.69 7.33 -52.49 -0.38 2.31 16 37 H 0.40 1.25 6.97 -40.82 -0.28 0.97 16 38 H 0.41 2.07 8.93 -40.82 -0.36 1.71 16 39 H 0.14 0.54 6.53 -52.49 -0.34 0.20 16 40 H 0.17 1.08 8.06 -52.49 -0.42 0.66 16 41 H 0.11 1.62 8.07 -51.93 -0.42 1.20 16 42 H 0.09 1.39 5.09 -51.93 -0.26 1.12 16 43 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 44 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 45 H 0.09 1.06 7.26 -51.93 -0.38 0.68 16 LS Contribution 369.64 15.07 5.57 5.57 Total: -1.00 -37.03 369.64 -7.82 -44.85 By element: Atomic # 1 Polarization: 22.40 SS G_CDS: -5.70 Total: 16.70 kcal Atomic # 6 Polarization: 6.73 SS G_CDS: -3.22 Total: 3.52 kcal Atomic # 7 Polarization: -70.46 SS G_CDS: 0.39 Total: -70.07 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: 0.16 Total: -18.82 kcal Atomic # 14 Polarization: 23.27 SS G_CDS: -5.02 Total: 18.25 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -37.03 -7.82 -44.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666043543.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.167 kcal (2) G-P(sol) polarization free energy of solvation -37.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds