Wall clock time and date at job start Tue Mar 31 2020 16:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47108 * 2 1 4 4 N 1.46492 * 109.47347 * 300.00258 * 3 2 1 5 5 C 1.36935 * 120.00235 * 179.72132 * 4 3 2 6 6 H 1.08009 * 119.99971 * 0.27573 * 5 4 3 7 7 C 1.38815 * 120.00363 * 180.27568 * 5 4 3 8 8 N 1.31619 * 119.99821 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00041 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47216 * 90.00186 * 9 7 5 11 11 H 1.48498 * 109.47109 * 210.00371 * 9 7 5 12 12 H 1.48498 * 109.47134 * 330.00104 * 9 7 5 13 13 N 1.46503 * 109.47302 * 240.00395 * 2 1 3 14 14 C 1.34771 * 120.00375 * 173.96121 * 13 2 1 15 15 O 1.21520 * 119.99829 * 5.27103 * 14 13 2 16 16 C 1.48164 * 119.99963 * 185.27154 * 14 13 2 17 17 C 1.39253 * 119.65521 * 179.72773 * 16 14 13 18 18 C 1.39760 * 118.90015 * 179.71348 * 17 16 14 19 19 C 1.48148 * 120.88841 * 180.27828 * 18 17 16 20 20 N 1.34771 * 119.99993 * 180.27373 * 19 18 17 21 21 O 1.21521 * 119.99574 * 0.27764 * 19 18 17 22 22 C 1.39805 * 118.22247 * 0.54976 * 18 17 16 23 23 C 1.38506 * 119.19001 * 359.73047 * 22 18 17 24 24 N 1.31458 * 121.03253 * 359.97438 * 23 22 18 25 25 C 1.52997 * 109.47430 * 120.00329 * 2 1 3 26 26 C 1.53005 * 117.49961 * 123.08058 * 25 2 1 27 27 C 1.53000 * 60.00015 * 252.51214 * 26 25 2 28 28 H 1.09000 * 109.47547 * 59.99387 * 1 2 3 29 29 H 1.09002 * 109.46969 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47021 * 299.99130 * 1 2 3 31 31 H 1.08999 * 109.47163 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.46470 * 60.00532 * 3 2 1 33 33 H 0.96998 * 120.00162 * 0.02562 * 4 3 2 34 34 H 0.96999 * 119.99679 * 180.02562 * 8 7 5 35 35 H 0.97005 * 119.99514 * 353.96178 * 13 2 1 36 36 H 1.08002 * 120.55034 * 359.97438 * 17 16 14 37 37 H 0.97002 * 120.00116 * 0.02562 * 20 19 18 38 38 H 0.96996 * 119.99812 * 179.97438 * 20 19 18 39 39 H 1.07998 * 120.40471 * 179.76078 * 22 18 17 40 40 H 1.07997 * 119.47741 * 180.02562 * 23 22 18 41 41 H 1.09002 * 115.54931 * 268.79063 * 25 2 1 42 42 H 1.09002 * 117.49970 * 359.97438 * 26 25 2 43 43 H 1.09001 * 117.49723 * 145.02463 * 26 25 2 44 44 H 1.09005 * 117.49909 * 252.51432 * 27 26 25 45 45 H 1.09000 * 117.50441 * 107.48806 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5516 2.1332 -1.1961 5 6 1.8777 3.4458 -1.4099 6 1 2.4987 3.9707 -0.6989 7 6 1.4103 4.1019 -2.5403 8 7 0.6532 3.4624 -3.4065 9 14 1.8557 5.8924 -2.8323 10 1 3.1162 5.9678 -3.6137 11 1 0.7641 6.5572 -3.5883 12 1 2.0410 6.5756 -1.5269 13 7 2.0184 -0.6905 -1.1962 14 6 3.3373 -0.7084 -1.4728 15 8 4.1302 -0.2357 -0.6826 16 6 3.8204 -1.3044 -2.7403 17 6 5.1842 -1.3140 -3.0214 18 6 5.6231 -1.8856 -4.2189 19 6 7.0643 -1.9251 -4.5595 20 7 7.4672 -2.4758 -5.7217 21 8 7.8832 -1.4609 -3.7909 22 6 4.6651 -2.4141 -5.0893 23 6 3.3272 -2.3584 -4.7356 24 7 2.9487 -1.8187 -3.5982 25 6 2.0400 -0.7213 1.2492 26 6 2.9740 -1.9157 1.0435 27 6 1.5318 -2.1422 1.5015 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9562 0.8901 33 1 0.9937 1.6619 -1.8344 34 1 0.3268 3.9208 -4.1966 35 1 1.3923 -1.1349 -1.7892 36 1 5.8915 -0.8905 -2.3237 37 1 6.8135 -2.8460 -6.3353 38 1 8.4108 -2.5012 -5.9448 39 1 4.9648 -2.8606 -6.0259 40 1 2.5833 -2.7656 -5.4043 41 1 2.2163 -0.0880 2.1186 42 1 3.2247 -2.1878 0.0182 43 1 3.7650 -2.0683 1.7777 44 1 1.3741 -2.4438 2.5370 45 1 0.8340 -2.5631 0.7776 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666043543.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:49 Heat of formation + Delta-G solvation = -11.162038 kcal Electronic energy + Delta-G solvation = -29120.719377 eV Core-core repulsion = 25138.811761 eV Total energy + Delta-G solvation = -3981.907616 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.13564 -41.23167 -39.96852 -38.34902 -36.60685 -35.26127 -34.94768 -33.67259 -33.10973 -32.32182 -31.04962 -27.68211 -26.43247 -25.69551 -25.19581 -23.21187 -23.08423 -22.83547 -21.55130 -20.31706 -19.67749 -19.27488 -18.34535 -18.15957 -17.33605 -16.98488 -16.87165 -16.56086 -16.25632 -16.12151 -15.98101 -15.54352 -15.39757 -15.03492 -15.00059 -14.89389 -14.67091 -14.33053 -13.58236 -13.49309 -13.30122 -13.08941 -13.00433 -12.82787 -12.40437 -12.29214 -12.12477 -12.01217 -11.78067 -11.69179 -11.43492 -11.18883 -11.15020 -10.97201 -10.83311 -10.81780 -10.47257 -10.35212 -9.92539 -8.93832 -7.95163 -5.21320 -0.62531 -0.27835 1.42462 1.44479 1.48548 1.52813 1.90934 2.05201 2.32421 2.53863 2.81121 2.94031 3.12115 3.37874 3.53607 3.65323 3.70753 3.76528 3.84405 3.98019 3.99650 4.17263 4.22833 4.35994 4.37151 4.55949 4.58083 4.65012 4.78770 4.80276 4.88339 4.90671 4.96388 5.08190 5.18943 5.27807 5.32031 5.36313 5.40434 5.46644 5.68230 5.73938 6.25757 6.27463 6.46615 6.74521 7.13413 7.26257 7.34537 8.09171 8.37692 9.27813 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.008345 B = 0.004582 C = 0.003413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3354.302212 B = 6109.594817 C = 8201.083962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.205 3.795 3 C 0.141 3.859 4 N -0.729 5.729 5 C -0.244 4.244 6 H 0.062 0.938 7 C -0.068 4.068 8 N -0.962 5.962 9 Si 0.967 3.033 10 H -0.293 1.293 11 H -0.287 1.287 12 H -0.273 1.273 13 N -0.685 5.685 14 C 0.571 3.429 15 O -0.551 6.551 16 C 0.061 3.939 17 C -0.081 4.081 18 C -0.110 4.110 19 C 0.564 3.436 20 N -0.815 5.815 21 O -0.581 6.581 22 C -0.090 4.090 23 C 0.098 3.902 24 N -0.451 5.451 25 C -0.161 4.161 26 C -0.170 4.170 27 C -0.148 4.148 28 H 0.048 0.952 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.022 0.978 32 H 0.023 0.977 33 H 0.377 0.623 34 H 0.251 0.749 35 H 0.412 0.588 36 H 0.127 0.873 37 H 0.422 0.578 38 H 0.418 0.582 39 H 0.203 0.797 40 H 0.216 0.784 41 H 0.106 0.894 42 H 0.075 0.925 43 H 0.087 0.913 44 H 0.112 0.888 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.998 -21.884 -5.185 22.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.119 3.881 3 C 0.014 3.986 4 N -0.373 5.373 5 C -0.376 4.376 6 H 0.080 0.920 7 C -0.261 4.261 8 N -0.613 5.613 9 Si 0.796 3.204 10 H -0.221 1.221 11 H -0.214 1.214 12 H -0.198 1.198 13 N -0.336 5.336 14 C 0.357 3.643 15 O -0.429 6.429 16 C -0.075 4.075 17 C -0.103 4.103 18 C -0.121 4.121 19 C 0.349 3.651 20 N -0.380 5.380 21 O -0.461 6.461 22 C -0.111 4.111 23 C -0.062 4.062 24 N -0.164 5.164 25 C -0.181 4.181 26 C -0.207 4.207 27 C -0.185 4.185 28 H 0.067 0.933 29 H 0.106 0.894 30 H 0.096 0.904 31 H 0.040 0.960 32 H 0.041 0.959 33 H 0.211 0.789 34 H 0.060 0.940 35 H 0.249 0.751 36 H 0.145 0.855 37 H 0.256 0.744 38 H 0.252 0.748 39 H 0.220 0.780 40 H 0.232 0.768 41 H 0.124 0.876 42 H 0.094 0.906 43 H 0.105 0.895 44 H 0.130 0.870 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 4.123 -20.986 -3.731 21.710 hybrid contribution 1.046 1.107 -1.105 1.882 sum 5.169 -19.878 -4.835 21.101 Atomic orbital electron populations 1.21909 0.91247 1.03328 1.03046 1.19997 0.94933 0.89795 0.83387 1.21142 0.97163 0.90952 0.89384 1.42321 1.61128 1.09655 1.24183 1.19540 1.24572 0.88973 1.04524 0.91991 1.25410 1.01172 1.02075 0.97427 1.69791 1.40625 1.37316 1.13542 0.85238 0.76786 0.80642 0.77708 1.22074 1.21354 1.19827 1.45718 1.06774 1.54516 1.26582 1.17900 0.83261 0.78516 0.84637 1.90753 1.55997 1.47205 1.48959 1.21031 0.90464 1.00394 0.95642 1.22089 0.95831 0.95234 0.97153 1.20354 0.94668 1.01493 0.95634 1.18174 0.87264 0.77342 0.82341 1.43411 1.13979 1.61019 1.19620 1.90852 1.55457 1.48328 1.51485 1.23091 0.92883 0.94985 1.00098 1.23711 0.96110 0.94068 0.92293 1.67451 1.38463 1.06427 1.04022 1.22430 1.05948 0.91412 0.98267 1.22858 0.94002 1.02365 1.01501 1.23071 0.95983 0.96243 1.03155 0.93257 0.89365 0.90350 0.95988 0.95909 0.78916 0.94000 0.75099 0.85474 0.74449 0.74828 0.78006 0.76752 0.87625 0.90629 0.89483 0.86954 0.87846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.14 8.19 71.98 0.59 -3.55 16 2 C 0.20 7.13 0.55 3.60 0.00 7.13 16 3 C 0.14 6.47 4.83 86.38 0.42 6.89 16 4 N -0.73 -39.35 5.17 -343.45 -1.78 -41.13 16 5 C -0.24 -14.65 9.99 84.03 0.84 -13.81 16 6 H 0.06 3.71 7.83 -2.91 -0.02 3.69 16 7 C -0.07 -4.09 5.50 84.86 0.47 -3.62 16 8 N -0.96 -59.67 13.06 21.65 0.28 -59.39 16 9 Si 0.97 48.51 29.55 68.60 2.03 50.54 16 10 H -0.29 -14.70 7.11 99.48 0.71 -13.99 16 11 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 12 H -0.27 -13.17 7.11 99.48 0.71 -12.46 16 13 N -0.69 -23.68 4.17 -425.46 -1.78 -25.46 16 14 C 0.57 22.19 5.07 86.88 0.44 22.63 16 15 O -0.55 -24.87 12.24 -3.78 -0.05 -24.91 16 16 C 0.06 2.06 6.75 41.90 0.28 2.35 16 17 C -0.08 -2.65 9.20 22.88 0.21 -2.44 16 18 C -0.11 -2.55 5.91 -19.90 -0.12 -2.67 16 19 C 0.56 12.78 8.07 86.88 0.70 13.48 16 20 N -0.81 -7.92 8.83 -175.40 -1.55 -9.47 16 21 O -0.58 -19.64 17.28 -3.78 -0.07 -19.70 16 22 C -0.09 -1.19 9.62 22.71 0.22 -0.97 16 23 C 0.10 1.63 11.17 84.81 0.95 2.58 16 24 N -0.45 -12.21 9.52 -185.08 -1.76 -13.97 16 25 C -0.16 -4.85 4.82 -10.79 -0.05 -4.91 16 26 C -0.17 -4.97 8.30 30.60 0.25 -4.72 16 27 C -0.15 -3.34 9.68 30.60 0.30 -3.04 16 28 H 0.05 1.75 6.86 -2.39 -0.02 1.73 16 29 H 0.09 2.02 6.96 -2.39 -0.02 2.00 16 30 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.02 1.16 5.92 -2.39 -0.01 1.14 16 32 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.38 20.88 6.35 -92.71 -0.59 20.29 16 34 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 35 H 0.41 12.79 7.82 -92.70 -0.73 12.07 16 36 H 0.13 4.91 7.33 -2.91 -0.02 4.88 16 37 H 0.42 0.50 6.97 -92.71 -0.65 -0.15 16 38 H 0.42 3.09 8.93 -92.71 -0.83 2.26 16 39 H 0.20 0.10 6.53 -2.91 -0.02 0.09 16 40 H 0.22 1.52 8.06 -2.91 -0.02 1.50 16 41 H 0.11 3.22 8.07 -2.39 -0.02 3.20 16 42 H 0.08 2.45 5.09 -2.39 -0.01 2.44 16 43 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 44 H 0.11 2.06 8.14 -2.38 -0.02 2.04 16 45 H 0.10 2.10 7.26 -2.39 -0.02 2.08 16 Total: -1.00 -87.89 369.64 -0.87 -88.76 By element: Atomic # 1 Polarization: 41.10 SS G_CDS: -1.70 Total: 39.41 kcal Atomic # 6 Polarization: 9.83 SS G_CDS: 5.50 Total: 15.32 kcal Atomic # 7 Polarization: -142.83 SS G_CDS: -6.58 Total: -149.41 kcal Atomic # 8 Polarization: -44.50 SS G_CDS: -0.11 Total: -44.61 kcal Atomic # 14 Polarization: 48.51 SS G_CDS: 2.03 Total: 50.54 kcal Total: -87.89 -0.87 -88.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666043543.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.594 kcal (2) G-P(sol) polarization free energy of solvation -87.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds