Wall clock time and date at job start Tue Mar 31 2020 16:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47368 * 2 1 4 4 N 1.46496 * 109.47307 * 120.00428 * 2 1 3 5 5 C 1.46510 * 119.99735 * 304.95368 * 4 2 1 6 6 C 1.52995 * 109.46986 * 277.02551 * 5 4 2 7 7 H 1.09001 * 110.21739 * 67.59887 * 6 5 4 8 8 C 1.54480 * 110.24300 * 189.61093 * 6 5 4 9 9 C 1.54629 * 101.76509 * 144.41770 * 8 6 5 10 10 C 1.51278 * 104.19528 * 335.20559 * 9 8 6 11 11 O 1.21286 * 124.94395 * 196.22964 * 10 9 8 12 12 N 1.34422 * 110.11735 * 16.24843 * 10 9 8 13 13 S 1.65597 * 120.00515 * 124.95984 * 4 2 1 14 14 O 1.42093 * 104.28174 * 153.93025 * 13 4 2 15 15 O 1.42102 * 104.27678 * 26.06662 * 13 4 2 16 16 C 1.81406 * 104.44674 * 269.99913 * 13 4 2 17 17 C 1.52993 * 109.47263 * 179.97438 * 16 13 4 18 18 C 1.53003 * 109.47443 * 179.97438 * 17 16 13 19 19 C 1.50701 * 109.47213 * 180.02562 * 18 17 16 20 20 H 1.08000 * 120.00295 * 359.97438 * 19 18 17 21 21 C 1.37878 * 119.99472 * 180.02562 * 19 18 17 22 22 N 1.31511 * 120.00547 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99442 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46822 * 180.02562 * 23 21 19 25 25 H 1.48499 * 109.47159 * 299.99740 * 23 21 19 26 26 H 1.48494 * 109.47470 * 59.99917 * 23 21 19 27 27 H 1.08997 * 109.47410 * 299.99382 * 1 2 3 28 28 H 1.09001 * 109.46980 * 60.00001 * 1 2 3 29 29 H 1.09008 * 109.47086 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47383 * 240.00156 * 2 1 3 31 31 H 1.08992 * 109.47549 * 171.99166 * 3 2 1 32 32 H 1.08998 * 109.47375 * 292.00099 * 3 2 1 33 33 H 1.09008 * 109.46337 * 51.99789 * 3 2 1 34 34 H 1.08994 * 109.46819 * 37.02962 * 5 4 2 35 35 H 1.08996 * 109.46721 * 157.02511 * 5 4 2 36 36 H 1.09000 * 110.97453 * 262.53396 * 8 6 5 37 37 H 1.09002 * 110.97103 * 26.30172 * 8 6 5 38 38 H 1.09002 * 110.48765 * 216.52470 * 9 8 6 39 39 H 1.08997 * 110.48603 * 93.88008 * 9 8 6 40 40 H 0.96996 * 124.35070 * 180.38210 * 12 10 9 41 41 H 1.09001 * 109.47062 * 59.99536 * 16 13 4 42 42 H 1.08997 * 109.47153 * 299.99966 * 16 13 4 43 43 H 1.09009 * 109.46836 * 60.00345 * 17 16 13 44 44 H 1.08997 * 109.47450 * 300.00325 * 17 16 13 45 45 H 1.09001 * 109.46912 * 60.00058 * 18 17 16 46 46 H 1.09006 * 109.46969 * 300.00358 * 18 17 16 47 47 H 0.97005 * 119.99461 * 0.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 1.5771 -0.2566 2.5240 6 6 2.4313 0.9266 2.9836 7 1 2.2292 1.8003 2.3640 8 6 2.1483 1.2452 4.4685 9 6 3.5460 1.6760 4.9704 10 6 4.5072 0.9929 4.0229 11 8 5.6932 0.8411 4.2263 12 7 3.8557 0.5789 2.9224 13 16 3.0691 -1.9619 1.0473 14 8 3.7820 -1.9731 2.2763 15 8 3.7361 -1.7228 -0.1845 16 6 1.9989 -3.4210 0.9189 17 6 2.8624 -4.6757 0.7746 18 6 1.9598 -5.9065 0.6669 19 6 2.8104 -7.1424 0.5254 20 1 3.8871 -7.0585 0.5131 21 6 2.2140 -8.3802 0.4107 22 7 0.9029 -8.4824 0.4253 23 14 3.2684 -9.9121 0.2346 24 1 2.3922 -11.1065 0.1290 25 1 4.1024 -9.8010 -0.9890 26 1 4.1484 -10.0467 1.4231 27 1 -0.3634 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1205 1.4459 0.1432 32 1 1.7982 1.9134 -0.9528 33 1 1.5645 1.9959 0.8099 34 1 0.5311 0.0463 2.4783 35 1 1.6864 -1.0797 3.2301 36 1 1.4315 2.0610 4.5627 37 1 1.7998 0.3586 4.9982 38 1 3.7074 1.3313 5.9918 39 1 3.6559 2.7587 4.9103 40 1 4.2735 0.1109 2.1826 41 1 1.3532 -3.3224 0.0462 42 1 1.3863 -3.5024 1.8167 43 1 3.5083 -4.7745 1.6471 44 1 3.4747 -4.5941 -0.1234 45 1 1.3135 -5.8079 -0.2053 46 1 1.3478 -5.9879 1.5653 47 1 0.3555 -7.6868 0.5164 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001669791180.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:05 Heat of formation + Delta-G solvation = -122.982826 kcal Electronic energy + Delta-G solvation = -28149.938946 eV Core-core repulsion = 24266.333617 eV Total energy + Delta-G solvation = -3883.605329 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.57192 -38.18127 -37.22418 -36.15498 -35.94612 -34.99029 -32.34510 -32.13191 -31.42862 -29.16108 -27.67604 -27.44831 -24.70871 -23.50655 -21.75974 -21.46380 -20.93840 -20.43787 -19.04061 -18.12336 -17.59604 -16.93320 -16.55034 -16.34574 -15.85912 -15.34541 -14.97570 -14.56591 -14.35963 -14.22645 -13.79429 -13.75223 -13.62245 -13.50457 -13.35913 -13.01929 -12.90070 -12.76563 -12.32502 -12.13326 -12.10778 -11.98643 -11.96191 -11.91030 -11.60216 -11.55468 -11.44945 -11.23206 -11.03095 -10.83913 -10.83320 -10.17041 -10.15631 -9.94982 -9.87428 -9.48571 -9.00847 -8.61829 -8.40312 -6.44310 -4.14326 0.22114 2.48216 2.58267 3.26762 3.42267 3.43794 3.62365 3.77731 3.99730 4.12088 4.15693 4.28838 4.37730 4.49558 4.67022 4.71783 4.76554 4.83032 4.91734 4.95831 4.96875 5.09329 5.17675 5.27114 5.32490 5.33769 5.36379 5.43527 5.49899 5.51628 5.65964 5.69381 5.77595 5.91840 5.94547 6.06698 6.23987 6.32162 6.65170 6.74695 7.01391 7.20775 7.32939 8.09266 8.22175 8.37695 8.79399 9.57907 10.96428 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015931 B = 0.003114 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.165673 B = 8988.254552 C = 9825.811114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.138 3.862 3 C -0.162 4.162 4 N -1.001 6.001 5 C 0.112 3.888 6 C 0.106 3.894 7 H 0.092 0.908 8 C -0.128 4.128 9 C -0.155 4.155 10 C 0.519 3.481 11 O -0.537 6.537 12 N -0.712 5.712 13 S 2.584 3.416 14 O -0.946 6.946 15 O -0.956 6.956 16 C -0.609 4.609 17 C -0.099 4.099 18 C 0.019 3.981 19 C -0.608 4.608 20 H 0.052 0.948 21 C 0.016 3.984 22 N -0.911 5.911 23 Si 1.069 2.931 24 H -0.282 1.282 25 H -0.286 1.286 26 H -0.286 1.286 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.101 0.899 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.405 0.595 41 H 0.126 0.874 42 H 0.126 0.874 43 H 0.067 0.933 44 H 0.066 0.934 45 H 0.011 0.989 46 H 0.011 0.989 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.477 25.136 4.053 26.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.033 3.967 3 C -0.221 4.221 4 N -0.837 5.837 5 C -0.014 4.014 6 C -0.001 4.001 7 H 0.110 0.890 8 C -0.166 4.166 9 C -0.195 4.195 10 C 0.305 3.695 11 O -0.414 6.414 12 N -0.370 5.370 13 S 2.681 3.319 14 O -0.936 6.936 15 O -0.946 6.946 16 C -0.741 4.741 17 C -0.138 4.138 18 C -0.020 4.020 19 C -0.646 4.646 20 H 0.070 0.930 21 C -0.187 4.187 22 N -0.547 5.547 23 Si 0.897 3.103 24 H -0.207 1.207 25 H -0.213 1.213 26 H -0.213 1.213 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.119 0.881 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.114 0.886 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.106 0.894 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.246 0.754 41 H 0.144 0.856 42 H 0.145 0.855 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.029 0.971 46 H 0.029 0.971 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.026 23.558 4.066 24.243 hybrid contribution -0.590 1.180 -0.237 1.340 sum -4.616 24.737 3.829 25.454 Atomic orbital electron populations 1.22189 0.94623 1.02886 1.02621 1.20922 0.94648 0.94138 0.87039 1.22298 1.01862 0.95558 1.02334 1.57947 1.66136 1.48302 1.11270 1.21707 0.99078 0.97664 0.82972 1.22363 0.81876 0.98366 0.97510 0.89023 1.22671 0.96992 1.03098 0.93860 1.22333 0.94322 1.02226 1.00638 1.20808 0.87911 0.77998 0.82799 1.90751 1.15542 1.58021 1.77057 1.46312 1.09478 1.59218 1.21947 1.05920 0.75722 0.75689 0.74530 1.93624 1.69106 1.85874 1.44994 1.93588 1.71260 1.83938 1.45810 1.30591 1.15249 1.17200 1.11071 1.21368 0.97937 0.92466 1.02054 1.19176 0.94871 0.91549 0.96369 1.22070 0.94326 0.92780 1.55464 0.92985 1.25894 0.97601 1.01635 0.93619 1.70806 1.04476 1.33120 1.46319 0.83541 0.74746 0.75330 0.76706 1.20682 1.21287 1.21269 0.91851 0.91249 0.91852 0.88107 0.92081 0.91428 0.91881 0.88563 0.89015 0.88979 0.89424 0.87987 0.87978 0.75399 0.85572 0.85522 0.91397 0.91485 0.97057 0.97051 0.92199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.96 9.03 37.15 0.34 -0.62 16 2 C 0.14 1.10 3.14 -67.94 -0.21 0.89 16 3 C -0.16 -1.10 8.16 37.16 0.30 -0.80 16 4 N -1.00 -9.41 2.35 -107.31 -0.25 -9.66 16 5 C 0.11 0.81 4.85 -4.04 -0.02 0.79 16 6 C 0.11 0.78 3.24 -67.02 -0.22 0.56 16 7 H 0.09 0.51 5.34 -51.93 -0.28 0.24 16 8 C -0.13 -0.67 6.69 -25.10 -0.17 -0.84 16 9 C -0.15 -1.20 6.86 -26.74 -0.18 -1.38 16 10 C 0.52 6.95 8.43 -10.86 -0.09 6.85 16 11 O -0.54 -9.86 18.03 5.55 0.10 -9.76 16 12 N -0.71 -8.54 4.77 -52.77 -0.25 -8.79 16 13 S 2.58 36.15 4.70 -107.50 -0.51 35.64 16 14 O -0.95 -15.60 14.37 -57.54 -0.83 -16.43 16 15 O -0.96 -16.00 16.63 -57.54 -0.96 -16.95 16 16 C -0.61 -9.08 6.18 37.15 0.23 -8.85 16 17 C -0.10 -2.02 5.16 -26.73 -0.14 -2.16 16 18 C 0.02 0.47 4.28 -27.88 -0.12 0.35 16 19 C -0.61 -17.41 9.11 -34.44 -0.31 -17.73 16 20 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 21 C 0.02 0.47 5.46 -17.82 -0.10 0.38 16 22 N -0.91 -27.68 13.65 55.43 0.76 -26.92 16 23 Si 1.07 25.35 29.90 -169.99 -5.08 20.26 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 27 H 0.06 0.28 6.60 -51.93 -0.34 -0.06 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 30 H 0.10 0.93 6.98 -51.93 -0.36 0.57 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.32 6.05 -51.92 -0.31 0.00 16 34 H 0.10 0.39 6.26 -51.93 -0.33 0.07 16 35 H 0.09 0.71 7.37 -51.93 -0.38 0.33 16 36 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 37 H 0.09 0.44 7.80 -51.93 -0.41 0.03 16 38 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.41 5.70 6.33 -40.82 -0.26 5.44 16 41 H 0.13 1.67 8.14 -51.92 -0.42 1.24 16 42 H 0.13 1.65 8.14 -51.93 -0.42 1.23 16 43 H 0.07 1.38 8.14 -51.92 -0.42 0.96 16 44 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 45 H 0.01 0.29 8.01 -51.93 -0.42 -0.13 16 46 H 0.01 0.29 8.01 -51.93 -0.42 -0.13 16 47 H 0.27 8.01 7.22 -40.82 -0.29 7.72 16 LS Contribution 379.58 15.07 5.72 5.72 Total: -1.00 -38.46 379.58 -9.64 -48.10 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -7.65 Total: 1.36 kcal Atomic # 6 Polarization: -21.87 SS G_CDS: -0.69 Total: -22.56 kcal Atomic # 7 Polarization: -45.63 SS G_CDS: 0.25 Total: -45.38 kcal Atomic # 8 Polarization: -41.46 SS G_CDS: -1.68 Total: -43.14 kcal Atomic # 14 Polarization: 25.35 SS G_CDS: -5.08 Total: 20.26 kcal Atomic # 16 Polarization: 36.15 SS G_CDS: -0.51 Total: 35.64 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -38.46 -9.64 -48.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669791180.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.887 kcal (2) G-P(sol) polarization free energy of solvation -38.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds