Wall clock time and date at job start Tue Mar 31 2020 16:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47368 * 2 1 4 4 N 1.46496 * 109.47307 * 120.00428 * 2 1 3 5 5 C 1.46510 * 119.99735 * 304.95368 * 4 2 1 6 6 C 1.52995 * 109.46986 * 277.02551 * 5 4 2 7 7 H 1.09001 * 110.21739 * 67.59887 * 6 5 4 8 8 C 1.54480 * 110.24300 * 189.61093 * 6 5 4 9 9 C 1.54629 * 101.76509 * 144.41770 * 8 6 5 10 10 C 1.51278 * 104.19528 * 335.20559 * 9 8 6 11 11 O 1.21286 * 124.94395 * 196.22964 * 10 9 8 12 12 N 1.34422 * 110.11735 * 16.24843 * 10 9 8 13 13 S 1.65597 * 120.00515 * 124.95984 * 4 2 1 14 14 O 1.42093 * 104.28174 * 153.93025 * 13 4 2 15 15 O 1.42102 * 104.27678 * 26.06662 * 13 4 2 16 16 C 1.81406 * 104.44674 * 269.99913 * 13 4 2 17 17 C 1.52993 * 109.47263 * 179.97438 * 16 13 4 18 18 C 1.53003 * 109.47443 * 179.97438 * 17 16 13 19 19 C 1.50701 * 109.47213 * 180.02562 * 18 17 16 20 20 H 1.08000 * 120.00295 * 359.97438 * 19 18 17 21 21 C 1.37878 * 119.99472 * 180.02562 * 19 18 17 22 22 N 1.31511 * 120.00547 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99442 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46822 * 180.02562 * 23 21 19 25 25 H 1.48499 * 109.47159 * 299.99740 * 23 21 19 26 26 H 1.48494 * 109.47470 * 59.99917 * 23 21 19 27 27 H 1.08997 * 109.47410 * 299.99382 * 1 2 3 28 28 H 1.09001 * 109.46980 * 60.00001 * 1 2 3 29 29 H 1.09008 * 109.47086 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47383 * 240.00156 * 2 1 3 31 31 H 1.08992 * 109.47549 * 171.99166 * 3 2 1 32 32 H 1.08998 * 109.47375 * 292.00099 * 3 2 1 33 33 H 1.09008 * 109.46337 * 51.99789 * 3 2 1 34 34 H 1.08994 * 109.46819 * 37.02962 * 5 4 2 35 35 H 1.08996 * 109.46721 * 157.02511 * 5 4 2 36 36 H 1.09000 * 110.97453 * 262.53396 * 8 6 5 37 37 H 1.09002 * 110.97103 * 26.30172 * 8 6 5 38 38 H 1.09002 * 110.48765 * 216.52470 * 9 8 6 39 39 H 1.08997 * 110.48603 * 93.88008 * 9 8 6 40 40 H 0.96996 * 124.35070 * 180.38210 * 12 10 9 41 41 H 1.09001 * 109.47062 * 59.99536 * 16 13 4 42 42 H 1.08997 * 109.47153 * 299.99966 * 16 13 4 43 43 H 1.09009 * 109.46836 * 60.00345 * 17 16 13 44 44 H 1.08997 * 109.47450 * 300.00325 * 17 16 13 45 45 H 1.09001 * 109.46912 * 60.00058 * 18 17 16 46 46 H 1.09006 * 109.46969 * 300.00358 * 18 17 16 47 47 H 0.97005 * 119.99461 * 0.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 1.5771 -0.2566 2.5240 6 6 2.4313 0.9266 2.9836 7 1 2.2292 1.8003 2.3640 8 6 2.1483 1.2452 4.4685 9 6 3.5460 1.6760 4.9704 10 6 4.5072 0.9929 4.0229 11 8 5.6932 0.8411 4.2263 12 7 3.8557 0.5789 2.9224 13 16 3.0691 -1.9619 1.0473 14 8 3.7820 -1.9731 2.2763 15 8 3.7361 -1.7228 -0.1845 16 6 1.9989 -3.4210 0.9189 17 6 2.8624 -4.6757 0.7746 18 6 1.9598 -5.9065 0.6669 19 6 2.8104 -7.1424 0.5254 20 1 3.8871 -7.0585 0.5131 21 6 2.2140 -8.3802 0.4107 22 7 0.9029 -8.4824 0.4253 23 14 3.2684 -9.9121 0.2346 24 1 2.3922 -11.1065 0.1290 25 1 4.1024 -9.8010 -0.9890 26 1 4.1484 -10.0467 1.4231 27 1 -0.3634 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1205 1.4459 0.1432 32 1 1.7982 1.9134 -0.9528 33 1 1.5645 1.9959 0.8099 34 1 0.5311 0.0463 2.4783 35 1 1.6864 -1.0797 3.2301 36 1 1.4315 2.0610 4.5627 37 1 1.7998 0.3586 4.9982 38 1 3.7074 1.3313 5.9918 39 1 3.6559 2.7587 4.9103 40 1 4.2735 0.1109 2.1826 41 1 1.3532 -3.3224 0.0462 42 1 1.3863 -3.5024 1.8167 43 1 3.5083 -4.7745 1.6471 44 1 3.4747 -4.5941 -0.1234 45 1 1.3135 -5.8079 -0.2053 46 1 1.3478 -5.9879 1.5653 47 1 0.3555 -7.6868 0.5164 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001669791180.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:03 Heat of formation + Delta-G solvation = -152.186028 kcal Electronic energy + Delta-G solvation = -28151.205292 eV Core-core repulsion = 24266.333617 eV Total energy + Delta-G solvation = -3884.871675 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.36978 -38.98416 -38.44008 -37.19217 -37.04042 -36.84367 -34.30076 -32.76338 -32.12149 -29.90104 -29.34022 -28.05300 -25.54653 -25.29349 -22.92382 -22.28938 -22.00440 -21.31757 -19.91832 -19.29657 -18.90013 -18.43665 -17.45546 -17.31040 -17.08217 -16.40521 -15.90188 -15.71505 -15.66213 -15.41673 -15.14710 -14.94575 -14.63023 -14.25358 -14.18343 -13.98361 -13.76160 -13.61092 -13.47344 -13.42951 -13.24170 -13.20082 -13.13674 -12.77074 -12.65165 -12.59958 -12.49607 -12.21343 -11.99088 -11.96989 -11.95528 -11.85306 -11.65203 -11.51373 -10.90445 -10.77033 -10.60455 -10.32866 -9.81568 -8.75764 -6.46988 -0.91918 1.49860 1.53085 1.57483 1.61911 1.77544 2.42253 2.51538 2.67408 2.99876 3.09005 3.34987 3.53850 3.61561 3.70556 3.73810 3.86848 4.13282 4.15993 4.20937 4.24140 4.30537 4.38218 4.41110 4.52514 4.66404 4.71550 4.77905 4.80302 4.85963 4.87894 4.95422 5.05864 5.13140 5.18460 5.20202 5.29162 5.30245 5.40203 5.48181 5.65420 5.84751 5.90189 6.10726 6.12268 6.50931 7.23721 7.33659 8.65928 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015931 B = 0.003114 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.165673 B = 8988.254552 C = 9825.811114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.131 3.869 3 C -0.161 4.161 4 N -0.987 5.987 5 C 0.102 3.898 6 C 0.097 3.903 7 H 0.117 0.883 8 C -0.115 4.115 9 C -0.146 4.146 10 C 0.497 3.503 11 O -0.606 6.606 12 N -0.719 5.719 13 S 2.605 3.395 14 O -0.974 6.974 15 O -0.988 6.988 16 C -0.611 4.611 17 C -0.100 4.100 18 C 0.017 3.983 19 C -0.633 4.633 20 H 0.048 0.952 21 C -0.034 4.034 22 N -0.933 5.933 23 Si 1.114 2.886 24 H -0.279 1.279 25 H -0.270 1.270 26 H -0.270 1.270 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.056 0.944 30 H 0.081 0.919 31 H 0.037 0.963 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.142 0.858 35 H 0.086 0.914 36 H 0.136 0.864 37 H 0.092 0.908 38 H 0.105 0.895 39 H 0.126 0.874 40 H 0.389 0.611 41 H 0.143 0.857 42 H 0.147 0.853 43 H 0.061 0.939 44 H 0.060 0.940 45 H 0.001 0.999 46 H 0.002 0.998 47 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.781 27.225 4.670 28.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.026 3.974 3 C -0.219 4.219 4 N -0.826 5.826 5 C -0.023 4.023 6 C -0.009 4.009 7 H 0.135 0.865 8 C -0.153 4.153 9 C -0.186 4.186 10 C 0.286 3.714 11 O -0.488 6.488 12 N -0.373 5.373 13 S 2.702 3.298 14 O -0.964 6.964 15 O -0.978 6.978 16 C -0.741 4.741 17 C -0.139 4.139 18 C -0.021 4.021 19 C -0.671 4.671 20 H 0.067 0.933 21 C -0.232 4.232 22 N -0.570 5.570 23 Si 0.935 3.065 24 H -0.204 1.204 25 H -0.195 1.195 26 H -0.195 1.195 27 H 0.106 0.894 28 H 0.099 0.901 29 H 0.075 0.925 30 H 0.099 0.901 31 H 0.056 0.944 32 H 0.098 0.902 33 H 0.108 0.892 34 H 0.160 0.840 35 H 0.104 0.896 36 H 0.154 0.846 37 H 0.110 0.890 38 H 0.124 0.876 39 H 0.144 0.856 40 H 0.227 0.773 41 H 0.161 0.839 42 H 0.165 0.835 43 H 0.080 0.920 44 H 0.078 0.922 45 H 0.020 0.980 46 H 0.020 0.980 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -6.385 25.657 4.676 26.850 hybrid contribution 0.075 0.618 -0.474 0.782 sum -6.310 26.275 4.203 27.347 Atomic orbital electron populations 1.22188 0.92229 1.03063 1.04449 1.21151 0.96433 0.94329 0.85509 1.22310 1.00529 0.94948 1.04137 1.57585 1.65557 1.46329 1.13094 1.22105 1.01405 0.97573 0.81228 1.22808 0.79090 0.99173 0.99795 0.86532 1.22789 0.96092 1.04860 0.91578 1.22387 0.94059 1.02978 0.99167 1.21947 0.87883 0.77702 0.83907 1.90693 1.18657 1.60860 1.78595 1.46664 1.11658 1.58003 1.20965 1.05000 0.75742 0.75931 0.73165 1.93589 1.70376 1.86445 1.45983 1.93539 1.72614 1.84452 1.47238 1.30567 1.15180 1.15366 1.12966 1.21171 0.97861 0.93356 1.01535 1.19107 0.94960 0.92737 0.95266 1.22561 0.94735 0.94531 1.55246 0.93350 1.27402 0.98027 1.05157 0.92630 1.70924 1.05275 1.32723 1.48064 0.82973 0.73707 0.71838 0.77977 1.20367 1.19481 1.19530 0.89406 0.90065 0.92526 0.90083 0.94399 0.90189 0.89246 0.84011 0.89594 0.84599 0.88970 0.87619 0.85562 0.77303 0.83867 0.83478 0.92031 0.92155 0.98044 0.97989 0.93226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.25 9.03 71.98 0.65 -0.60 16 2 C 0.13 1.78 3.14 44.99 0.14 1.93 16 3 C -0.16 -1.74 8.16 71.98 0.59 -1.15 16 4 N -0.99 -16.71 2.35 -493.41 -1.16 -17.87 16 5 C 0.10 1.11 4.85 86.38 0.42 1.53 16 6 C 0.10 1.09 3.24 45.44 0.15 1.24 16 7 H 0.12 0.75 5.34 -2.39 -0.01 0.74 16 8 C -0.12 -0.70 6.69 31.65 0.21 -0.49 16 9 C -0.15 -1.90 6.86 30.59 0.21 -1.69 16 10 C 0.50 13.41 8.43 87.90 0.74 14.16 16 11 O -0.61 -23.59 18.03 -3.05 -0.05 -23.64 16 12 N -0.72 -16.91 4.77 -439.45 -2.09 -19.01 16 13 S 2.60 73.28 4.70 -56.49 -0.27 73.02 16 14 O -0.97 -32.94 14.37 -127.65 -1.83 -34.77 16 15 O -0.99 -34.12 16.63 -127.65 -2.12 -36.25 16 16 C -0.61 -18.07 6.18 71.98 0.44 -17.62 16 17 C -0.10 -4.19 5.16 30.59 0.16 -4.04 16 18 C 0.02 0.90 4.28 29.85 0.13 1.03 16 19 C -0.63 -36.98 9.11 25.60 0.23 -36.74 16 20 H 0.05 2.78 7.74 -2.91 -0.02 2.76 16 21 C -0.03 -1.99 5.46 84.66 0.46 -1.53 16 22 N -0.93 -57.44 13.65 21.45 0.29 -57.14 16 23 Si 1.11 50.86 29.90 68.60 2.05 52.91 16 24 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 25 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 26 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 27 H 0.09 0.26 6.60 -2.39 -0.02 0.24 16 28 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 30 H 0.08 1.44 6.98 -2.39 -0.02 1.43 16 31 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.09 0.47 6.05 -2.38 -0.01 0.45 16 34 H 0.14 0.31 6.26 -2.39 -0.01 0.30 16 35 H 0.09 1.10 7.37 -2.39 -0.02 1.08 16 36 H 0.14 -0.25 8.14 -2.39 -0.02 -0.27 16 37 H 0.09 0.53 7.80 -2.39 -0.02 0.51 16 38 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.13 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.39 11.30 6.33 -92.71 -0.59 10.71 16 41 H 0.14 3.69 8.14 -2.39 -0.02 3.68 16 42 H 0.15 3.69 8.14 -2.39 -0.02 3.67 16 43 H 0.06 2.60 8.14 -2.38 -0.02 2.58 16 44 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 45 H 0.00 0.07 8.01 -2.39 -0.02 0.05 16 46 H 0.00 0.10 8.01 -2.38 -0.02 0.08 16 47 H 0.26 15.84 7.22 -92.70 -0.67 15.17 16 Total: -1.00 -89.70 379.58 -0.17 -89.87 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: 0.48 Total: 16.87 kcal Atomic # 6 Polarization: -48.53 SS G_CDS: 4.53 Total: -43.99 kcal Atomic # 7 Polarization: -91.06 SS G_CDS: -2.96 Total: -94.02 kcal Atomic # 8 Polarization: -90.65 SS G_CDS: -4.01 Total: -94.66 kcal Atomic # 14 Polarization: 50.86 SS G_CDS: 2.05 Total: 52.91 kcal Atomic # 16 Polarization: 73.28 SS G_CDS: -0.27 Total: 73.02 kcal Total: -89.70 -0.17 -89.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669791180.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.314 kcal (2) G-P(sol) polarization free energy of solvation -89.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds