Wall clock time and date at job start Tue Mar 31 2020 16:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47176 * 2 1 4 4 N 1.46507 * 109.46989 * 120.00122 * 2 1 3 5 5 C 1.46494 * 120.00128 * 304.80977 * 4 2 1 6 6 C 1.53004 * 109.47057 * 247.51928 * 5 4 2 7 7 H 1.09003 * 110.21553 * 295.81253 * 6 5 4 8 8 C 1.54483 * 110.24337 * 173.88283 * 6 5 4 9 9 C 1.54631 * 101.76209 * 215.58172 * 8 6 5 10 10 C 1.51279 * 104.19423 * 24.80216 * 9 8 6 11 11 O 1.21281 * 124.94007 * 163.74856 * 10 9 8 12 12 N 1.34417 * 110.11680 * 343.74144 * 10 9 8 13 13 S 1.65602 * 119.99854 * 124.80947 * 4 2 1 14 14 O 1.42098 * 104.27479 * 149.15153 * 13 4 2 15 15 O 1.42107 * 104.27786 * 21.29731 * 13 4 2 16 16 C 1.81396 * 104.44991 * 265.22637 * 13 4 2 17 17 C 1.53004 * 109.47093 * 180.02562 * 16 13 4 18 18 C 1.52998 * 109.47115 * 179.97438 * 17 16 13 19 19 C 1.50700 * 109.47070 * 180.02562 * 18 17 16 20 20 H 1.08002 * 120.00119 * 0.02562 * 19 18 17 21 21 C 1.37872 * 120.00152 * 180.02562 * 19 18 17 22 22 N 1.31513 * 120.00353 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 119.99897 * 359.97438 * 21 19 18 24 24 H 1.48499 * 109.46996 * 90.00520 * 23 21 19 25 25 H 1.48501 * 109.47545 * 210.00400 * 23 21 19 26 26 H 1.48503 * 109.47208 * 330.00727 * 23 21 19 27 27 H 1.09003 * 109.47038 * 299.99240 * 1 2 3 28 28 H 1.08989 * 109.47123 * 60.00089 * 1 2 3 29 29 H 1.09004 * 109.46915 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47066 * 239.99851 * 2 1 3 31 31 H 1.08992 * 109.46983 * 185.41187 * 3 2 1 32 32 H 1.09000 * 109.47164 * 305.41475 * 3 2 1 33 33 H 1.09003 * 109.46868 * 65.41799 * 3 2 1 34 34 H 1.09005 * 109.47112 * 7.51742 * 5 4 2 35 35 H 1.08996 * 109.47319 * 127.51626 * 5 4 2 36 36 H 1.08995 * 110.97080 * 333.70315 * 8 6 5 37 37 H 1.08998 * 110.96593 * 97.46844 * 8 6 5 38 38 H 1.08998 * 110.48367 * 143.47858 * 9 8 6 39 39 H 1.09001 * 110.48956 * 265.98992 * 9 8 6 40 40 H 0.96997 * 124.34646 * 179.56930 * 12 10 9 41 41 H 1.08998 * 109.47071 * 60.00109 * 16 13 4 42 42 H 1.08999 * 109.46840 * 299.99483 * 16 13 4 43 43 H 1.08996 * 109.47110 * 299.99882 * 17 16 13 44 44 H 1.08999 * 109.46671 * 59.99791 * 17 16 13 45 45 H 1.08996 * 109.47400 * 300.00151 * 18 17 16 46 46 H 1.08998 * 109.46695 * 60.00275 * 18 17 16 47 47 H 0.97003 * 120.00220 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 1.5797 -0.2546 2.5242 6 6 2.7665 0.3435 3.2824 7 1 3.5242 -0.4200 3.4587 8 6 2.2943 0.9477 4.6235 9 6 3.2179 2.1807 4.7562 10 6 3.6069 2.5080 3.3314 11 8 4.0906 3.5589 2.9673 12 7 3.3385 1.4646 2.5276 13 16 3.0662 -1.9643 1.0471 14 8 3.8577 -1.9067 2.2259 15 8 3.6501 -1.7894 -0.2366 16 6 2.0004 -3.4320 1.0670 17 6 2.8618 -4.6896 0.9351 18 6 1.9629 -5.9276 0.9525 19 6 2.8114 -7.1663 0.8232 20 1 3.8845 -7.0793 0.7376 21 6 2.2178 -8.4107 0.8141 22 7 2.9582 -9.4917 0.7008 23 14 0.3619 -8.5612 0.9629 24 1 -0.2470 -8.5353 -0.3913 25 1 0.0212 -9.8413 1.6342 26 1 -0.1642 -7.4268 1.7639 27 1 -0.3633 0.5137 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 3.1256 1.4440 -0.0969 32 1 1.5997 1.9835 -0.8375 33 1 1.7581 1.9275 0.9346 34 1 0.7985 0.4984 2.4197 35 1 1.1890 -1.1092 3.0766 36 1 1.2480 1.2482 4.5690 37 1 2.4558 0.2492 5.4444 38 1 2.6787 3.0146 5.2056 39 1 4.0999 1.9349 5.3477 40 1 3.5015 1.4542 1.5715 41 1 1.2987 -3.3828 0.2344 42 1 1.4482 -3.4673 2.0061 43 1 3.4145 -4.6546 -0.0037 44 1 3.5632 -4.7385 1.7680 45 1 1.4106 -5.9624 1.8915 46 1 1.2613 -5.8788 0.1198 47 1 2.5406 -10.3672 0.6948 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001669791181.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:08 Heat of formation + Delta-G solvation = -112.754493 kcal Electronic energy + Delta-G solvation = -28068.663470 eV Core-core repulsion = 24185.501675 eV Total energy + Delta-G solvation = -3883.161795 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.69249 -38.16395 -37.30233 -36.21722 -35.93492 -34.89446 -32.38306 -32.27321 -31.55733 -28.92408 -28.44480 -27.57134 -24.78231 -23.68185 -21.87371 -21.47369 -20.76040 -20.34997 -18.82216 -18.17997 -17.25143 -16.96156 -16.84382 -16.33077 -16.06304 -15.38352 -15.04101 -14.55691 -14.43851 -14.39086 -14.23388 -13.93312 -13.63270 -13.47877 -13.09767 -12.98570 -12.91401 -12.46780 -12.42896 -12.33211 -12.23137 -12.06909 -12.03866 -11.94742 -11.69469 -11.58480 -11.50670 -11.29298 -11.08180 -11.01095 -10.92614 -10.16886 -10.03269 -9.97472 -9.86377 -9.40252 -9.29927 -9.05726 -8.63888 -6.13266 -4.13033 0.20456 2.40834 2.47336 3.19546 3.22055 3.29744 3.31143 3.76667 4.00953 4.07539 4.17315 4.19927 4.35326 4.46597 4.66466 4.72906 4.80417 4.86718 4.91375 4.92692 4.95006 5.12171 5.20034 5.21812 5.25704 5.32695 5.36650 5.45565 5.48002 5.53514 5.65737 5.68238 5.85310 5.88590 6.01322 6.05237 6.17598 6.29045 6.58748 6.62637 6.86720 7.05267 7.19359 7.65444 8.07564 8.42223 8.90916 9.47544 11.00012 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019385 B = 0.002986 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.088608 B = 9373.774153 C = 9717.223743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.137 3.863 3 C -0.171 4.171 4 N -1.002 6.002 5 C 0.115 3.885 6 C 0.084 3.916 7 H 0.128 0.872 8 C -0.126 4.126 9 C -0.156 4.156 10 C 0.516 3.484 11 O -0.544 6.544 12 N -0.723 5.723 13 S 2.592 3.408 14 O -0.952 6.952 15 O -0.955 6.955 16 C -0.614 4.614 17 C -0.098 4.098 18 C -0.003 4.003 19 C -0.528 4.528 20 H 0.075 0.925 21 C 0.068 3.932 22 N -0.899 5.899 23 Si 0.880 3.120 24 H -0.276 1.276 25 H -0.286 1.286 26 H -0.266 1.266 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.106 0.894 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.095 0.905 38 H 0.100 0.900 39 H 0.105 0.895 40 H 0.410 0.590 41 H 0.127 0.873 42 H 0.128 0.872 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.020 0.980 46 H 0.015 0.985 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.105 23.086 5.344 25.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.032 3.968 3 C -0.230 4.230 4 N -0.838 5.838 5 C -0.011 4.011 6 C -0.023 4.023 7 H 0.145 0.855 8 C -0.164 4.164 9 C -0.196 4.196 10 C 0.302 3.698 11 O -0.421 6.421 12 N -0.383 5.383 13 S 2.690 3.310 14 O -0.943 6.943 15 O -0.945 6.945 16 C -0.746 4.746 17 C -0.137 4.137 18 C -0.042 4.042 19 C -0.566 4.566 20 H 0.093 0.907 21 C -0.134 4.134 22 N -0.538 5.538 23 Si 0.707 3.293 24 H -0.202 1.202 25 H -0.212 1.212 26 H -0.191 1.191 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.124 0.876 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.112 0.888 35 H 0.105 0.895 36 H 0.101 0.899 37 H 0.114 0.886 38 H 0.118 0.882 39 H 0.123 0.877 40 H 0.254 0.746 41 H 0.146 0.854 42 H 0.146 0.854 43 H 0.089 0.911 44 H 0.091 0.909 45 H 0.038 0.962 46 H 0.034 0.966 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.935 23.535 5.168 25.073 hybrid contribution -1.639 -0.652 -0.330 1.794 sum -8.573 22.882 4.837 24.910 Atomic orbital electron populations 1.22196 0.94584 1.02815 1.02590 1.20952 0.94717 0.93851 0.87304 1.22410 1.01331 0.96071 1.03159 1.57900 1.66434 1.48220 1.11209 1.21690 0.96613 1.00965 0.81879 1.22846 0.97606 0.90695 0.91138 0.85508 1.22653 0.99888 0.97069 0.96832 1.22343 1.01914 0.99840 0.95510 1.20918 0.76970 0.82954 0.88962 1.90747 1.45142 1.25835 1.80401 1.46808 1.64182 1.15429 1.11864 1.05681 0.75468 0.75474 0.74408 1.93504 1.66071 1.85721 1.48964 1.93579 1.74476 1.84816 1.41627 1.30622 1.15352 1.17438 1.11139 1.21321 0.97840 0.91888 1.02657 1.19519 0.95359 0.92564 0.96756 1.21123 0.95432 0.89127 1.50966 0.90736 1.25026 0.98160 0.95771 0.94431 1.69908 1.35605 0.97993 1.50281 0.86777 0.86150 0.77656 0.78667 1.20212 1.21226 1.19065 0.92039 0.91291 0.91808 0.87620 0.92177 0.90913 0.91277 0.88771 0.89466 0.89884 0.88622 0.88184 0.87665 0.74554 0.85430 0.85390 0.91077 0.90944 0.96173 0.96646 0.92569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.97 9.11 37.16 0.34 -0.63 16 2 C 0.14 1.10 3.12 -67.93 -0.21 0.88 16 3 C -0.17 -1.32 7.65 37.16 0.28 -1.03 16 4 N -1.00 -8.85 2.40 -107.30 -0.26 -9.11 16 5 C 0.11 0.77 4.50 -4.04 -0.02 0.75 16 6 C 0.08 0.69 3.32 -67.01 -0.22 0.47 16 7 H 0.13 1.32 5.46 -51.93 -0.28 1.03 16 8 C -0.13 -0.69 6.69 -25.10 -0.17 -0.85 16 9 C -0.16 -1.11 6.86 -26.74 -0.18 -1.30 16 10 C 0.52 5.81 8.43 -10.86 -0.09 5.72 16 11 O -0.54 -8.40 18.03 5.56 0.10 -8.30 16 12 N -0.72 -7.28 4.55 -52.76 -0.24 -7.52 16 13 S 2.59 32.82 5.40 -107.50 -0.58 32.24 16 14 O -0.95 -13.75 14.59 -57.54 -0.84 -14.59 16 15 O -0.95 -15.06 16.47 -57.54 -0.95 -16.01 16 16 C -0.61 -7.99 6.18 37.16 0.23 -7.77 16 17 C -0.10 -1.80 5.16 -26.73 -0.14 -1.94 16 18 C 0.00 -0.08 4.04 -27.88 -0.11 -0.19 16 19 C -0.53 -14.69 9.66 -34.44 -0.33 -15.02 16 20 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 21 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 22 N -0.90 -27.25 13.96 55.43 0.77 -26.48 16 23 Si 0.88 20.87 27.47 -169.99 -4.67 16.20 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 25 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 26 H -0.27 -5.93 6.54 56.52 0.37 -5.56 16 27 H 0.06 0.31 6.65 -51.93 -0.35 -0.03 16 28 H 0.07 0.36 8.14 -51.94 -0.42 -0.07 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.11 0.95 6.83 -51.93 -0.35 0.59 16 31 H 0.06 0.54 6.80 -51.93 -0.35 0.18 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.52 6.01 -51.93 -0.31 0.21 16 34 H 0.09 0.46 6.04 -51.93 -0.31 0.15 16 35 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.08 0.31 7.86 -51.93 -0.41 -0.10 16 37 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.41 4.34 4.90 -40.82 -0.20 4.14 16 41 H 0.13 1.44 8.14 -51.92 -0.42 1.02 16 42 H 0.13 1.37 8.14 -51.92 -0.42 0.95 16 43 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 44 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 45 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 46 H 0.02 0.33 7.57 -51.93 -0.39 -0.06 16 47 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 374.97 15.07 5.65 5.65 Total: -1.00 -36.37 374.97 -9.31 -45.67 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -7.57 Total: 1.29 kcal Atomic # 6 Polarization: -18.34 SS G_CDS: -0.72 Total: -19.07 kcal Atomic # 7 Polarization: -43.37 SS G_CDS: 0.28 Total: -43.10 kcal Atomic # 8 Polarization: -37.21 SS G_CDS: -1.69 Total: -38.89 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.67 Total: 16.20 kcal Atomic # 16 Polarization: 32.82 SS G_CDS: -0.58 Total: 32.24 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -36.37 -9.31 -45.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669791181.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.081 kcal (2) G-P(sol) polarization free energy of solvation -36.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds