Wall clock time and date at job start Tue Mar 31 2020 16:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47176 * 2 1 4 4 N 1.46507 * 109.46989 * 120.00122 * 2 1 3 5 5 C 1.46494 * 120.00128 * 304.80977 * 4 2 1 6 6 C 1.53004 * 109.47057 * 247.51928 * 5 4 2 7 7 H 1.09003 * 110.21553 * 295.81253 * 6 5 4 8 8 C 1.54483 * 110.24337 * 173.88283 * 6 5 4 9 9 C 1.54631 * 101.76209 * 215.58172 * 8 6 5 10 10 C 1.51279 * 104.19423 * 24.80216 * 9 8 6 11 11 O 1.21281 * 124.94007 * 163.74856 * 10 9 8 12 12 N 1.34417 * 110.11680 * 343.74144 * 10 9 8 13 13 S 1.65602 * 119.99854 * 124.80947 * 4 2 1 14 14 O 1.42098 * 104.27479 * 149.15153 * 13 4 2 15 15 O 1.42107 * 104.27786 * 21.29731 * 13 4 2 16 16 C 1.81396 * 104.44991 * 265.22637 * 13 4 2 17 17 C 1.53004 * 109.47093 * 180.02562 * 16 13 4 18 18 C 1.52998 * 109.47115 * 179.97438 * 17 16 13 19 19 C 1.50700 * 109.47070 * 180.02562 * 18 17 16 20 20 H 1.08002 * 120.00119 * 0.02562 * 19 18 17 21 21 C 1.37872 * 120.00152 * 180.02562 * 19 18 17 22 22 N 1.31513 * 120.00353 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 119.99897 * 359.97438 * 21 19 18 24 24 H 1.48499 * 109.46996 * 90.00520 * 23 21 19 25 25 H 1.48501 * 109.47545 * 210.00400 * 23 21 19 26 26 H 1.48503 * 109.47208 * 330.00727 * 23 21 19 27 27 H 1.09003 * 109.47038 * 299.99240 * 1 2 3 28 28 H 1.08989 * 109.47123 * 60.00089 * 1 2 3 29 29 H 1.09004 * 109.46915 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47066 * 239.99851 * 2 1 3 31 31 H 1.08992 * 109.46983 * 185.41187 * 3 2 1 32 32 H 1.09000 * 109.47164 * 305.41475 * 3 2 1 33 33 H 1.09003 * 109.46868 * 65.41799 * 3 2 1 34 34 H 1.09005 * 109.47112 * 7.51742 * 5 4 2 35 35 H 1.08996 * 109.47319 * 127.51626 * 5 4 2 36 36 H 1.08995 * 110.97080 * 333.70315 * 8 6 5 37 37 H 1.08998 * 110.96593 * 97.46844 * 8 6 5 38 38 H 1.08998 * 110.48367 * 143.47858 * 9 8 6 39 39 H 1.09001 * 110.48956 * 265.98992 * 9 8 6 40 40 H 0.96997 * 124.34646 * 179.56930 * 12 10 9 41 41 H 1.08998 * 109.47071 * 60.00109 * 16 13 4 42 42 H 1.08999 * 109.46840 * 299.99483 * 16 13 4 43 43 H 1.08996 * 109.47110 * 299.99882 * 17 16 13 44 44 H 1.08999 * 109.46671 * 59.99791 * 17 16 13 45 45 H 1.08996 * 109.47400 * 300.00151 * 18 17 16 46 46 H 1.08998 * 109.46695 * 60.00275 * 18 17 16 47 47 H 0.97003 * 120.00220 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 1.5797 -0.2546 2.5242 6 6 2.7665 0.3435 3.2824 7 1 3.5242 -0.4200 3.4587 8 6 2.2943 0.9477 4.6235 9 6 3.2179 2.1807 4.7562 10 6 3.6069 2.5080 3.3314 11 8 4.0906 3.5589 2.9673 12 7 3.3385 1.4646 2.5276 13 16 3.0662 -1.9643 1.0471 14 8 3.8577 -1.9067 2.2259 15 8 3.6501 -1.7894 -0.2366 16 6 2.0004 -3.4320 1.0670 17 6 2.8618 -4.6896 0.9351 18 6 1.9629 -5.9276 0.9525 19 6 2.8114 -7.1663 0.8232 20 1 3.8845 -7.0793 0.7376 21 6 2.2178 -8.4107 0.8141 22 7 2.9582 -9.4917 0.7008 23 14 0.3619 -8.5612 0.9629 24 1 -0.2470 -8.5353 -0.3913 25 1 0.0212 -9.8413 1.6342 26 1 -0.1642 -7.4268 1.7639 27 1 -0.3633 0.5137 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 3.1256 1.4440 -0.0969 32 1 1.5997 1.9835 -0.8375 33 1 1.7581 1.9275 0.9346 34 1 0.7985 0.4984 2.4197 35 1 1.1890 -1.1092 3.0766 36 1 1.2480 1.2482 4.5690 37 1 2.4558 0.2492 5.4444 38 1 2.6787 3.0146 5.2056 39 1 4.0999 1.9349 5.3477 40 1 3.5015 1.4542 1.5715 41 1 1.2987 -3.3828 0.2344 42 1 1.4482 -3.4673 2.0061 43 1 3.4145 -4.6546 -0.0037 44 1 3.5632 -4.7385 1.7680 45 1 1.4106 -5.9624 1.8915 46 1 1.2613 -5.8788 0.1198 47 1 2.5406 -10.3672 0.6948 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001669791181.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:07 Heat of formation + Delta-G solvation = -140.275596 kcal Electronic energy + Delta-G solvation = -28069.856875 eV Core-core repulsion = 24185.501675 eV Total energy + Delta-G solvation = -3884.355200 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.41854 -38.90371 -38.35980 -37.03221 -37.01124 -36.50475 -34.24979 -33.02234 -32.14805 -30.17284 -29.55276 -28.09671 -25.45352 -25.28766 -22.49608 -22.38590 -21.91296 -21.34692 -19.72800 -18.98480 -18.96368 -18.02322 -17.59632 -17.30475 -17.13833 -16.30572 -16.23214 -15.81986 -15.63478 -15.24297 -15.07361 -14.85214 -14.65454 -14.23512 -14.12182 -14.06812 -13.77912 -13.60510 -13.43757 -13.23137 -13.18121 -13.09120 -12.97862 -12.83135 -12.69396 -12.54502 -12.52548 -12.17521 -12.10870 -11.84260 -11.82817 -11.64716 -11.63483 -11.41134 -11.26552 -10.89591 -10.77576 -10.20732 -9.81674 -8.29735 -6.36191 -0.79538 1.37641 1.40306 1.51909 1.57307 1.63401 2.36874 2.47140 2.78851 3.05577 3.11644 3.38180 3.56270 3.65675 3.76848 3.89424 3.95041 4.12195 4.19963 4.29801 4.32647 4.34592 4.42426 4.57436 4.60729 4.69029 4.74753 4.77505 4.86283 4.91521 4.94956 4.98100 5.01876 5.12151 5.17025 5.31149 5.33741 5.37488 5.45901 5.49622 5.62740 5.65409 5.86847 6.08596 6.25002 6.72509 7.23912 7.28749 8.87386 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019385 B = 0.002986 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.088608 B = 9373.774153 C = 9717.223743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.133 3.867 3 C -0.169 4.169 4 N -0.990 5.990 5 C 0.107 3.893 6 C 0.073 3.927 7 H 0.104 0.896 8 C -0.113 4.113 9 C -0.151 4.151 10 C 0.503 3.497 11 O -0.597 6.597 12 N -0.723 5.723 13 S 2.604 3.396 14 O -0.974 6.974 15 O -0.994 6.994 16 C -0.608 4.608 17 C -0.104 4.104 18 C -0.003 4.003 19 C -0.545 4.545 20 H 0.027 0.973 21 C -0.001 4.001 22 N -0.954 5.954 23 Si 0.956 3.044 24 H -0.266 1.266 25 H -0.286 1.286 26 H -0.234 1.234 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.091 0.909 31 H 0.038 0.962 32 H 0.086 0.914 33 H 0.073 0.927 34 H 0.122 0.878 35 H 0.117 0.883 36 H 0.110 0.890 37 H 0.114 0.886 38 H 0.116 0.884 39 H 0.110 0.890 40 H 0.404 0.596 41 H 0.151 0.849 42 H 0.161 0.839 43 H 0.055 0.945 44 H 0.063 0.937 45 H 0.036 0.964 46 H 0.030 0.970 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.420 24.420 6.830 28.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.028 3.972 3 C -0.228 4.228 4 N -0.828 5.828 5 C -0.019 4.019 6 C -0.033 4.033 7 H 0.122 0.878 8 C -0.151 4.151 9 C -0.191 4.191 10 C 0.291 3.709 11 O -0.479 6.479 12 N -0.381 5.381 13 S 2.703 3.297 14 O -0.964 6.964 15 O -0.984 6.984 16 C -0.739 4.739 17 C -0.143 4.143 18 C -0.042 4.042 19 C -0.583 4.583 20 H 0.046 0.954 21 C -0.197 4.197 22 N -0.594 5.594 23 Si 0.778 3.222 24 H -0.191 1.191 25 H -0.212 1.212 26 H -0.156 1.156 27 H 0.095 0.905 28 H 0.096 0.904 29 H 0.086 0.914 30 H 0.109 0.891 31 H 0.057 0.943 32 H 0.105 0.895 33 H 0.092 0.908 34 H 0.140 0.860 35 H 0.135 0.865 36 H 0.129 0.871 37 H 0.132 0.868 38 H 0.134 0.866 39 H 0.128 0.872 40 H 0.247 0.753 41 H 0.169 0.831 42 H 0.179 0.821 43 H 0.074 0.926 44 H 0.082 0.918 45 H 0.054 0.946 46 H 0.048 0.952 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.250 24.854 6.665 28.084 hybrid contribution -0.153 -1.053 -0.827 1.347 sum -11.403 23.801 5.838 27.030 Atomic orbital electron populations 1.22180 0.92216 1.03494 1.03827 1.21086 0.96449 0.93308 0.86366 1.22403 1.00090 0.96333 1.03977 1.57574 1.65959 1.46627 1.12678 1.22060 0.96408 1.02849 0.80535 1.23015 0.97753 0.89731 0.92823 0.87837 1.22718 1.00797 0.96089 0.95474 1.22393 1.02797 1.01371 0.92514 1.21697 0.76063 0.82282 0.90810 1.90707 1.47618 1.27983 1.81610 1.47006 1.63532 1.15776 1.11751 1.05055 0.75641 0.75961 0.73093 1.93489 1.67302 1.86220 1.49416 1.93529 1.75862 1.85546 1.43489 1.30536 1.15011 1.14386 1.14005 1.21168 0.98056 0.93325 1.01748 1.19492 0.95363 0.91519 0.97824 1.21574 0.94250 0.91987 1.50529 0.95439 1.26147 1.04559 0.95106 0.93901 1.70091 1.38414 0.98825 1.52105 0.85579 0.78447 0.78608 0.79539 1.19113 1.21234 1.15640 0.90478 0.90445 0.91376 0.89065 0.94264 0.89519 0.90842 0.85990 0.86536 0.87136 0.86764 0.86558 0.87172 0.75349 0.83109 0.82090 0.92604 0.91811 0.94553 0.95214 0.92438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.27 9.11 71.98 0.66 -0.62 16 2 C 0.13 1.84 3.12 44.99 0.14 1.98 16 3 C -0.17 -2.40 7.65 71.98 0.55 -1.85 16 4 N -0.99 -15.07 2.40 -493.39 -1.18 -16.25 16 5 C 0.11 1.01 4.50 86.38 0.39 1.40 16 6 C 0.07 1.02 3.32 45.45 0.15 1.17 16 7 H 0.10 2.01 5.46 -2.39 -0.01 2.00 16 8 C -0.11 -0.79 6.69 31.65 0.21 -0.58 16 9 C -0.15 -1.82 6.86 30.59 0.21 -1.61 16 10 C 0.50 11.12 8.43 87.90 0.74 11.86 16 11 O -0.60 -18.98 18.03 -3.03 -0.05 -19.03 16 12 N -0.72 -14.00 4.55 -439.43 -2.00 -16.00 16 13 S 2.60 63.28 5.40 -56.49 -0.30 62.97 16 14 O -0.97 -27.66 14.59 -127.65 -1.86 -29.53 16 15 O -0.99 -31.88 16.47 -127.65 -2.10 -33.98 16 16 C -0.61 -14.11 6.18 71.98 0.44 -13.67 16 17 C -0.10 -3.76 5.16 30.59 0.16 -3.61 16 18 C 0.00 -0.15 4.04 29.85 0.12 -0.03 16 19 C -0.55 -31.00 9.66 25.60 0.25 -30.75 16 20 H 0.03 1.74 7.99 -2.91 -0.02 1.72 16 21 C 0.00 -0.03 5.47 84.65 0.46 0.43 16 22 N -0.95 -59.59 13.96 21.45 0.30 -59.29 16 23 Si 0.96 41.89 27.47 68.60 1.88 43.77 16 24 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 25 H -0.29 -12.46 7.11 99.48 0.71 -11.76 16 26 H -0.23 -8.95 6.54 99.48 0.65 -8.30 16 27 H 0.08 0.39 6.65 -2.39 -0.02 0.38 16 28 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.09 1.55 6.83 -2.39 -0.02 1.54 16 31 H 0.04 0.72 6.80 -2.39 -0.02 0.70 16 32 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.07 0.97 6.01 -2.39 -0.01 0.96 16 34 H 0.12 0.55 6.04 -2.38 -0.01 0.54 16 35 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.11 0.22 7.86 -2.39 -0.02 0.20 16 37 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 38 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.40 8.60 4.90 -92.71 -0.45 8.15 16 41 H 0.15 2.82 8.14 -2.39 -0.02 2.80 16 42 H 0.16 2.66 8.14 -2.39 -0.02 2.64 16 43 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 44 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 45 H 0.04 1.46 7.20 -2.39 -0.02 1.44 16 46 H 0.03 1.20 7.57 -2.39 -0.02 1.19 16 47 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -84.83 374.97 -0.38 -85.21 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: 0.46 Total: 17.99 kcal Atomic # 6 Polarization: -40.35 SS G_CDS: 4.48 Total: -35.87 kcal Atomic # 7 Polarization: -88.65 SS G_CDS: -2.88 Total: -91.54 kcal Atomic # 8 Polarization: -78.52 SS G_CDS: -4.02 Total: -82.54 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 1.88 Total: 43.77 kcal Atomic # 16 Polarization: 63.28 SS G_CDS: -0.30 Total: 62.97 kcal Total: -84.83 -0.38 -85.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669791181.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.065 kcal (2) G-P(sol) polarization free energy of solvation -84.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds