Wall clock time and date at job start Tue Mar 31 2020 16:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47435 * 2 1 4 4 N 1.46490 * 109.47708 * 179.97438 * 3 2 1 5 5 C 1.36943 * 120.00209 * 264.11685 * 4 3 2 6 6 H 1.07997 * 119.99994 * 188.01425 * 5 4 3 7 7 C 1.38805 * 119.99616 * 8.01108 * 5 4 3 8 8 N 1.31618 * 120.00422 * 25.65099 * 7 5 4 9 9 Si 1.86806 * 119.99986 * 205.64612 * 7 5 4 10 10 H 1.48503 * 109.46880 * 84.98872 * 9 7 5 11 11 H 1.48499 * 109.47255 * 204.98777 * 9 7 5 12 12 H 1.48496 * 109.46799 * 324.99345 * 9 7 5 13 13 C 1.46499 * 120.00175 * 84.11412 * 4 3 2 14 14 C 1.53004 * 109.47153 * 270.00227 * 13 4 3 15 15 N 1.46499 * 109.47005 * 179.97438 * 14 13 4 16 16 C 1.34777 * 119.99976 * 179.97438 * 15 14 13 17 17 O 1.21278 * 119.99919 * 0.02562 * 16 15 14 18 18 C 1.50696 * 119.99971 * 180.02562 * 16 15 14 19 19 C 1.52567 * 109.20079 * 58.76943 * 18 16 15 20 20 C 1.53030 * 109.99709 * 190.16581 * 19 18 16 21 21 S 1.81668 * 109.07902 * 296.49751 * 20 19 18 22 22 O 1.42101 * 108.66716 * 168.57886 * 21 20 19 23 23 O 1.42102 * 108.66632 * 299.82468 * 21 20 19 24 24 C 1.81667 * 101.30588 * 54.25014 * 21 20 19 25 25 C 1.52594 * 109.24319 * 180.02562 * 18 16 15 26 26 H 1.08999 * 109.47390 * 60.00264 * 1 2 3 27 27 H 1.09003 * 109.46835 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47264 * 299.99467 * 1 2 3 29 29 H 1.09000 * 109.47445 * 240.00023 * 2 1 3 30 30 H 1.09008 * 109.47454 * 120.00029 * 2 1 3 31 31 H 1.09000 * 109.46785 * 59.99618 * 3 2 1 32 32 H 1.09008 * 109.46823 * 300.00415 * 3 2 1 33 33 H 0.97001 * 120.00602 * 180.02562 * 8 7 5 34 34 H 1.08998 * 109.47692 * 150.00041 * 13 4 3 35 35 H 1.09007 * 109.47151 * 30.00044 * 13 4 3 36 36 H 1.09005 * 109.46883 * 60.00261 * 14 13 4 37 37 H 1.08990 * 109.47273 * 299.99829 * 14 13 4 38 38 H 0.96999 * 120.00623 * 0.02562 * 15 14 13 39 39 H 1.09000 * 109.24298 * 299.43846 * 18 16 15 40 40 H 1.09004 * 109.30362 * 70.05562 * 19 18 16 41 41 H 1.09000 * 109.46151 * 310.38061 * 19 18 16 42 42 H 1.09004 * 109.55236 * 176.59614 * 20 19 18 43 43 H 1.09000 * 109.55195 * 56.40414 * 20 19 18 44 44 H 1.09003 * 109.55153 * 65.56005 * 24 21 20 45 45 H 1.09006 * 109.55377 * 185.74775 * 24 21 20 46 46 H 1.08993 * 109.38798 * 49.58880 * 25 18 16 47 47 H 1.09004 * 109.29537 * 289.85792 * 25 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1892 1.5643 1.1806 6 1 5.2613 1.6945 1.1721 7 6 3.5048 1.5204 2.3874 8 7 2.3546 0.8858 2.4690 9 14 4.2162 2.3619 3.8958 10 1 3.8294 3.7957 3.8913 11 1 3.6881 1.7105 5.1213 12 1 5.6967 2.2487 3.8736 13 6 4.2380 1.3123 -1.2611 14 6 4.4932 -0.1680 -1.5522 15 7 5.2257 -0.2982 -2.8142 16 6 5.5633 -1.5191 -3.2745 17 8 5.2602 -2.5100 -2.6442 18 6 6.3173 -1.6531 -4.5724 19 6 7.6348 -0.8909 -4.4682 20 6 8.2970 -0.7999 -5.8448 21 16 8.7121 -2.4737 -6.4159 22 8 9.0769 -2.4088 -7.7878 23 8 9.6098 -3.0624 -5.4848 24 6 7.1026 -3.3054 -6.2811 25 6 6.5688 -3.1309 -4.8577 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5137 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 1.8761 0.8555 3.3122 34 1 5.1904 1.8368 -1.1839 35 1 3.6493 1.7454 -2.0698 36 1 3.5408 -0.6925 -1.6296 37 1 5.0819 -0.6011 -0.7436 38 1 5.4685 0.4942 -3.3182 39 1 5.7209 -1.2283 -5.3798 40 1 8.3000 -1.4134 -3.7806 41 1 7.4443 0.1139 -4.0912 42 1 9.2063 -0.2029 -5.7735 43 1 7.6092 -0.3338 -6.5503 44 1 6.4027 -2.8625 -6.9897 45 1 7.2209 -4.3667 -6.5002 46 1 5.6358 -3.6840 -4.7505 47 1 7.3009 -3.5153 -4.1474 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691193850.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:21 Heat of formation + Delta-G solvation = -92.463804 kcal Electronic energy + Delta-G solvation = -27186.190594 eV Core-core repulsion = 23303.908670 eV Total energy + Delta-G solvation = -3882.281925 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -40.12783 -37.50827 -36.87779 -36.39114 -36.32457 -34.55647 -32.30468 -31.97766 -31.42301 -29.19138 -27.43224 -25.55538 -24.06689 -23.61935 -22.11747 -20.88505 -20.26880 -19.78172 -19.21592 -17.61232 -17.10675 -16.80162 -16.72788 -16.06852 -15.79098 -15.25133 -14.95841 -14.54490 -14.47137 -14.11200 -13.81005 -13.69313 -13.53440 -13.26507 -12.99189 -12.69092 -12.50078 -12.47951 -12.41023 -12.33741 -12.23533 -11.85146 -11.64201 -11.45290 -11.36791 -11.10194 -11.08270 -10.89872 -10.66299 -10.44073 -10.42181 -10.02307 -9.96607 -9.87902 -9.65807 -9.28042 -8.72105 -8.39100 -6.99118 -5.83050 -3.14995 -0.36347 2.27439 2.64812 3.14852 3.28506 3.36699 3.44702 3.45133 3.61765 3.99997 4.10485 4.19827 4.35539 4.46574 4.48056 4.67948 4.80620 4.91597 5.06452 5.17497 5.26600 5.34723 5.43398 5.48845 5.63673 5.75359 5.80712 5.85163 6.13145 6.17694 6.23478 6.48967 6.58063 6.61023 6.63350 6.79826 6.95074 7.14346 7.22764 7.62267 7.64330 7.74305 8.06004 8.27846 8.34149 9.16822 9.78461 10.22313 11.20253 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020129 B = 0.002431 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.663584 B =11516.178293 C =12247.161808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.130 4.130 3 C 0.171 3.829 4 N -0.591 5.591 5 C -0.258 4.258 6 H 0.075 0.925 7 C 0.002 3.998 8 N -0.890 5.890 9 Si 0.897 3.103 10 H -0.289 1.289 11 H -0.293 1.293 12 H -0.282 1.282 13 C 0.143 3.857 14 C 0.088 3.912 15 N -0.723 5.723 16 C 0.514 3.486 17 O -0.535 6.535 18 C -0.130 4.130 19 C -0.105 4.105 20 C -0.602 4.602 21 S 2.414 3.586 22 O -0.946 6.946 23 O -0.934 6.934 24 C -0.600 4.600 25 C -0.094 4.094 26 H 0.030 0.970 27 H 0.033 0.967 28 H 0.051 0.949 29 H 0.020 0.980 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.003 0.997 33 H 0.253 0.747 34 H 0.049 0.951 35 H 0.042 0.958 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.395 0.605 39 H 0.108 0.892 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.139 0.861 43 H 0.136 0.864 44 H 0.134 0.866 45 H 0.138 0.862 46 H 0.100 0.900 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.645 -2.527 -18.757 20.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.170 4.170 3 C 0.046 3.954 4 N -0.311 5.311 5 C -0.387 4.387 6 H 0.092 0.908 7 C -0.196 4.196 8 N -0.535 5.535 9 Si 0.727 3.273 10 H -0.216 1.216 11 H -0.219 1.219 12 H -0.207 1.207 13 C 0.015 3.985 14 C -0.038 4.038 15 N -0.374 5.374 16 C 0.298 3.702 17 O -0.411 6.411 18 C -0.151 4.151 19 C -0.144 4.144 20 C -0.731 4.731 21 S 2.596 3.404 22 O -0.943 6.943 23 O -0.931 6.931 24 C -0.730 4.730 25 C -0.133 4.133 26 H 0.049 0.951 27 H 0.052 0.948 28 H 0.070 0.930 29 H 0.039 0.961 30 H 0.117 0.883 31 H 0.108 0.892 32 H 0.021 0.979 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.060 0.940 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.228 0.772 39 H 0.126 0.874 40 H 0.112 0.888 41 H 0.114 0.886 42 H 0.157 0.843 43 H 0.154 0.846 44 H 0.152 0.848 45 H 0.156 0.844 46 H 0.119 0.881 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 7.123 -3.565 -18.385 20.036 hybrid contribution -0.400 0.982 0.704 1.273 sum 6.723 -2.582 -17.681 19.091 Atomic orbital electron populations 1.21628 0.98554 0.99340 1.00015 1.22223 0.92926 1.00465 1.01350 1.20934 0.81526 0.94531 0.98431 1.44239 1.01904 1.83581 1.01390 1.19257 0.92248 1.43702 0.83469 0.90753 1.24726 0.97561 0.99994 0.97316 1.70158 1.17169 1.41065 1.25072 0.86375 0.78442 0.79877 0.82588 1.21581 1.21941 1.20737 1.20950 0.96356 0.91683 0.89542 1.22792 0.95970 1.01766 0.83249 1.46225 1.58052 1.07488 1.25612 1.20159 0.79840 0.83894 0.86303 1.90739 1.54559 1.37143 1.58689 1.21541 0.97543 0.97661 0.98379 1.21299 0.95287 1.03487 0.94322 1.30226 1.11545 1.24020 1.07293 1.08184 0.78125 0.78902 0.75238 1.93597 1.81556 1.86249 1.32904 1.93610 1.59872 1.75084 1.64511 1.30233 1.22190 1.14745 1.05828 1.21101 1.05190 0.95071 0.91909 0.95096 0.94800 0.92963 0.96097 0.88344 0.89182 0.97880 0.93664 0.93231 0.93960 0.91503 0.91361 0.77168 0.87422 0.88793 0.88617 0.84301 0.84594 0.84796 0.84388 0.88129 0.88928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 9.91 37.16 0.37 -2.22 16 2 C -0.13 -2.85 5.60 -26.73 -0.15 -3.00 16 3 C 0.17 3.87 4.92 -4.05 -0.02 3.85 16 4 N -0.59 -13.55 2.54 -173.24 -0.44 -13.99 16 5 C -0.26 -6.60 9.70 -15.06 -0.15 -6.75 16 6 H 0.07 1.88 7.94 -52.49 -0.42 1.46 16 7 C 0.00 0.05 4.89 -17.43 -0.09 -0.03 16 8 N -0.89 -23.79 8.62 55.49 0.48 -23.31 16 9 Si 0.90 20.89 29.62 -169.99 -5.04 15.86 16 10 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 13 C 0.14 2.58 5.82 -4.04 -0.02 2.56 16 14 C 0.09 1.54 5.88 -4.04 -0.02 1.51 16 15 N -0.72 -9.18 5.36 -60.30 -0.32 -9.50 16 16 C 0.51 6.71 7.14 -10.99 -0.08 6.63 16 17 O -0.53 -9.55 15.78 5.56 0.09 -9.46 16 18 C -0.13 -1.02 2.27 -92.20 -0.21 -1.23 16 19 C -0.11 -0.68 5.00 -26.94 -0.13 -0.82 16 20 C -0.60 -2.75 6.34 37.17 0.24 -2.52 16 21 S 2.41 17.22 5.30 -107.50 -0.57 16.65 16 22 O -0.95 -9.85 18.10 -57.82 -1.05 -10.89 16 23 O -0.93 -10.42 17.97 -57.82 -1.04 -11.46 16 24 C -0.60 -3.25 6.35 37.17 0.24 -3.02 16 25 C -0.09 -0.76 4.47 -26.93 -0.12 -0.88 16 26 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.02 0.44 5.98 -51.93 -0.31 0.13 16 30 H 0.10 2.52 6.33 -51.92 -0.33 2.19 16 31 H 0.09 2.29 5.85 -51.93 -0.30 1.99 16 32 H 0.00 0.06 7.98 -51.92 -0.41 -0.35 16 33 H 0.25 6.67 8.31 -40.82 -0.34 6.33 16 34 H 0.05 0.84 8.03 -51.93 -0.42 0.43 16 35 H 0.04 0.68 7.95 -51.93 -0.41 0.27 16 36 H 0.07 1.32 5.92 -51.93 -0.31 1.01 16 37 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 38 H 0.39 3.57 7.70 -40.82 -0.31 3.25 16 39 H 0.11 0.52 8.09 -51.93 -0.42 0.10 16 40 H 0.09 0.70 8.03 -51.93 -0.42 0.29 16 41 H 0.10 0.52 7.18 -51.93 -0.37 0.14 16 42 H 0.14 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.14 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.13 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.14 0.62 8.14 -51.92 -0.42 0.19 16 46 H 0.10 0.92 7.72 -51.93 -0.40 0.51 16 47 H 0.09 0.85 8.02 -51.93 -0.42 0.43 16 LS Contribution 379.08 15.07 5.71 5.71 Total: -1.00 -35.13 379.08 -10.10 -45.23 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -7.77 Total: 1.09 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: -0.15 Total: -5.92 kcal Atomic # 7 Polarization: -46.52 SS G_CDS: -0.28 Total: -46.81 kcal Atomic # 8 Polarization: -29.82 SS G_CDS: -2.00 Total: -31.81 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.04 Total: 15.86 kcal Atomic # 16 Polarization: 17.22 SS G_CDS: -0.57 Total: 16.65 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.13 -10.10 -45.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691193850.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.232 kcal (2) G-P(sol) polarization free energy of solvation -35.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds