Wall clock time and date at job start Tue Mar 31 2020 16:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47435 * 2 1 4 4 N 1.46490 * 109.47708 * 179.97438 * 3 2 1 5 5 C 1.36943 * 120.00209 * 264.11685 * 4 3 2 6 6 H 1.07997 * 119.99994 * 188.01425 * 5 4 3 7 7 C 1.38805 * 119.99616 * 8.01108 * 5 4 3 8 8 N 1.31618 * 120.00422 * 25.65099 * 7 5 4 9 9 Si 1.86806 * 119.99986 * 205.64612 * 7 5 4 10 10 H 1.48503 * 109.46880 * 84.98872 * 9 7 5 11 11 H 1.48499 * 109.47255 * 204.98777 * 9 7 5 12 12 H 1.48496 * 109.46799 * 324.99345 * 9 7 5 13 13 C 1.46499 * 120.00175 * 84.11412 * 4 3 2 14 14 C 1.53004 * 109.47153 * 270.00227 * 13 4 3 15 15 N 1.46499 * 109.47005 * 179.97438 * 14 13 4 16 16 C 1.34777 * 119.99976 * 179.97438 * 15 14 13 17 17 O 1.21278 * 119.99919 * 0.02562 * 16 15 14 18 18 C 1.50696 * 119.99971 * 180.02562 * 16 15 14 19 19 C 1.52567 * 109.20079 * 58.76943 * 18 16 15 20 20 C 1.53030 * 109.99709 * 190.16581 * 19 18 16 21 21 S 1.81668 * 109.07902 * 296.49751 * 20 19 18 22 22 O 1.42101 * 108.66716 * 168.57886 * 21 20 19 23 23 O 1.42102 * 108.66632 * 299.82468 * 21 20 19 24 24 C 1.81667 * 101.30588 * 54.25014 * 21 20 19 25 25 C 1.52594 * 109.24319 * 180.02562 * 18 16 15 26 26 H 1.08999 * 109.47390 * 60.00264 * 1 2 3 27 27 H 1.09003 * 109.46835 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47264 * 299.99467 * 1 2 3 29 29 H 1.09000 * 109.47445 * 240.00023 * 2 1 3 30 30 H 1.09008 * 109.47454 * 120.00029 * 2 1 3 31 31 H 1.09000 * 109.46785 * 59.99618 * 3 2 1 32 32 H 1.09008 * 109.46823 * 300.00415 * 3 2 1 33 33 H 0.97001 * 120.00602 * 180.02562 * 8 7 5 34 34 H 1.08998 * 109.47692 * 150.00041 * 13 4 3 35 35 H 1.09007 * 109.47151 * 30.00044 * 13 4 3 36 36 H 1.09005 * 109.46883 * 60.00261 * 14 13 4 37 37 H 1.08990 * 109.47273 * 299.99829 * 14 13 4 38 38 H 0.96999 * 120.00623 * 0.02562 * 15 14 13 39 39 H 1.09000 * 109.24298 * 299.43846 * 18 16 15 40 40 H 1.09004 * 109.30362 * 70.05562 * 19 18 16 41 41 H 1.09000 * 109.46151 * 310.38061 * 19 18 16 42 42 H 1.09004 * 109.55236 * 176.59614 * 20 19 18 43 43 H 1.09000 * 109.55195 * 56.40414 * 20 19 18 44 44 H 1.09003 * 109.55153 * 65.56005 * 24 21 20 45 45 H 1.09006 * 109.55377 * 185.74775 * 24 21 20 46 46 H 1.08993 * 109.38798 * 49.58880 * 25 18 16 47 47 H 1.09004 * 109.29537 * 289.85792 * 25 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1892 1.5643 1.1806 6 1 5.2613 1.6945 1.1721 7 6 3.5048 1.5204 2.3874 8 7 2.3546 0.8858 2.4690 9 14 4.2162 2.3619 3.8958 10 1 3.8294 3.7957 3.8913 11 1 3.6881 1.7105 5.1213 12 1 5.6967 2.2487 3.8736 13 6 4.2380 1.3123 -1.2611 14 6 4.4932 -0.1680 -1.5522 15 7 5.2257 -0.2982 -2.8142 16 6 5.5633 -1.5191 -3.2745 17 8 5.2602 -2.5100 -2.6442 18 6 6.3173 -1.6531 -4.5724 19 6 7.6348 -0.8909 -4.4682 20 6 8.2970 -0.7999 -5.8448 21 16 8.7121 -2.4737 -6.4159 22 8 9.0769 -2.4088 -7.7878 23 8 9.6098 -3.0624 -5.4848 24 6 7.1026 -3.3054 -6.2811 25 6 6.5688 -3.1309 -4.8577 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5137 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 1.8761 0.8555 3.3122 34 1 5.1904 1.8368 -1.1839 35 1 3.6493 1.7454 -2.0698 36 1 3.5408 -0.6925 -1.6296 37 1 5.0819 -0.6011 -0.7436 38 1 5.4685 0.4942 -3.3182 39 1 5.7209 -1.2283 -5.3798 40 1 8.3000 -1.4134 -3.7806 41 1 7.4443 0.1139 -4.0912 42 1 9.2063 -0.2029 -5.7735 43 1 7.6092 -0.3338 -6.5503 44 1 6.4027 -2.8625 -6.9897 45 1 7.2209 -4.3667 -6.5002 46 1 5.6358 -3.6840 -4.7505 47 1 7.3009 -3.5153 -4.1474 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691193850.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:20 Heat of formation + Delta-G solvation = -119.044793 kcal Electronic energy + Delta-G solvation = -27187.343232 eV Core-core repulsion = 23303.908670 eV Total energy + Delta-G solvation = -3883.434563 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.13611 -38.46774 -38.10936 -37.28367 -37.02281 -35.90731 -33.73660 -33.24310 -32.69194 -30.25386 -28.56051 -27.35548 -25.22023 -24.50022 -23.09144 -22.39063 -21.80524 -20.94669 -19.77484 -18.79522 -18.37427 -17.76440 -17.28155 -17.02696 -16.73529 -16.70611 -16.31460 -15.68000 -15.55066 -15.22713 -15.04857 -14.82589 -14.64819 -14.22789 -14.10984 -14.03810 -13.69596 -13.41985 -13.26696 -13.18849 -13.03514 -13.02073 -12.79704 -12.78020 -12.63426 -12.38883 -12.37228 -12.17213 -12.05393 -11.79628 -11.68777 -11.65199 -11.52979 -11.10531 -10.94499 -10.82945 -10.30985 -9.99739 -8.84202 -7.79023 -5.10965 -0.88392 1.49631 1.52917 1.58527 1.63463 1.79569 2.15655 2.57660 2.77086 3.01989 3.29508 3.42991 3.56845 3.66539 3.70717 3.84407 4.05543 4.12739 4.23807 4.26155 4.33271 4.44338 4.54269 4.62538 4.66228 4.69760 4.73383 4.86308 4.89540 4.93888 4.97620 5.09095 5.10784 5.17298 5.18672 5.30664 5.46673 5.50270 5.55527 5.67076 5.89240 6.20895 6.37899 6.63547 7.23332 7.33271 7.94445 8.32679 9.21772 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020129 B = 0.002431 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.663584 B =11516.178293 C =12247.161808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.120 4.120 3 C 0.174 3.826 4 N -0.608 5.608 5 C -0.263 4.263 6 H 0.073 0.927 7 C -0.047 4.047 8 N -0.908 5.908 9 Si 0.951 3.049 10 H -0.288 1.288 11 H -0.303 1.303 12 H -0.277 1.277 13 C 0.145 3.855 14 C 0.109 3.891 15 N -0.709 5.709 16 C 0.509 3.491 17 O -0.590 6.590 18 C -0.119 4.119 19 C -0.110 4.110 20 C -0.578 4.578 21 S 2.411 3.589 22 O -0.982 6.982 23 O -0.987 6.987 24 C -0.585 4.585 25 C -0.099 4.099 26 H 0.055 0.945 27 H 0.044 0.956 28 H 0.040 0.960 29 H 0.024 0.976 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.028 0.972 33 H 0.245 0.755 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.043 0.957 37 H 0.026 0.974 38 H 0.418 0.582 39 H 0.155 0.845 40 H 0.076 0.924 41 H 0.116 0.884 42 H 0.156 0.844 43 H 0.177 0.823 44 H 0.171 0.829 45 H 0.146 0.854 46 H 0.089 0.911 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.514 -0.645 -21.628 22.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.160 4.160 3 C 0.049 3.951 4 N -0.329 5.329 5 C -0.392 4.392 6 H 0.091 0.909 7 C -0.243 4.243 8 N -0.555 5.555 9 Si 0.782 3.218 10 H -0.215 1.215 11 H -0.230 1.230 12 H -0.203 1.203 13 C 0.018 3.982 14 C -0.018 4.018 15 N -0.361 5.361 16 C 0.296 3.704 17 O -0.470 6.470 18 C -0.140 4.140 19 C -0.149 4.149 20 C -0.710 4.710 21 S 2.599 3.401 22 O -0.979 6.979 23 O -0.984 6.984 24 C -0.715 4.715 25 C -0.138 4.138 26 H 0.074 0.926 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.042 0.958 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.046 0.954 33 H 0.055 0.945 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.061 0.939 37 H 0.045 0.955 38 H 0.256 0.744 39 H 0.173 0.827 40 H 0.094 0.906 41 H 0.135 0.865 42 H 0.174 0.826 43 H 0.195 0.805 44 H 0.189 0.811 45 H 0.164 0.836 46 H 0.108 0.892 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 7.055 -1.672 -21.323 22.522 hybrid contribution -0.369 0.389 1.566 1.655 sum 6.687 -1.283 -19.757 20.897 Atomic orbital electron populations 1.21532 0.96210 1.00312 1.00643 1.22012 0.94985 0.99645 0.99319 1.20811 0.81685 0.94633 0.97949 1.44416 1.02305 1.83897 1.02261 1.19486 0.92374 1.42677 0.84690 0.90871 1.25330 0.98368 1.01032 0.99525 1.70329 1.18154 1.42110 1.24882 0.85517 0.77893 0.78713 0.79723 1.21480 1.23003 1.20254 1.21096 0.97020 0.91764 0.88340 1.22136 0.94590 1.00789 0.84306 1.45929 1.57346 1.08786 1.24077 1.21108 0.78999 0.82790 0.87478 1.90725 1.56663 1.38985 1.60674 1.21603 0.98195 0.97950 0.96275 1.21354 0.94161 1.04020 0.95345 1.30047 1.13199 1.21143 1.06599 1.07938 0.78324 0.80086 0.73776 1.93552 1.82673 1.87173 1.34526 1.93546 1.62516 1.76985 1.65349 1.30100 1.21093 1.15616 1.04735 1.21075 1.04149 0.95347 0.93233 0.92571 0.93697 0.94115 0.95777 0.92608 0.92286 0.95429 0.94532 0.91872 0.90916 0.93899 0.95531 0.74438 0.82703 0.90576 0.86550 0.82621 0.80478 0.81119 0.83634 0.89243 0.91094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.73 9.91 71.98 0.71 -4.02 16 2 C -0.12 -5.27 5.60 30.59 0.17 -5.10 16 3 C 0.17 7.82 4.92 86.38 0.43 8.24 16 4 N -0.61 -27.61 2.54 -702.01 -1.78 -29.39 16 5 C -0.26 -13.51 9.70 84.03 0.81 -12.69 16 6 H 0.07 3.70 7.94 -2.91 -0.02 3.67 16 7 C -0.05 -2.49 4.89 84.86 0.41 -2.07 16 8 N -0.91 -50.05 8.62 21.65 0.19 -49.87 16 9 Si 0.95 43.67 29.62 68.60 2.03 45.70 16 10 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 11 H -0.30 -14.27 7.11 99.48 0.71 -13.57 16 12 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 13 C 0.15 4.93 5.82 86.38 0.50 5.44 16 14 C 0.11 3.77 5.88 86.38 0.51 4.27 16 15 N -0.71 -16.40 5.36 -463.07 -2.48 -18.88 16 16 C 0.51 12.55 7.14 87.66 0.63 13.17 16 17 O -0.59 -21.50 15.78 -3.02 -0.05 -21.54 16 18 C -0.12 -1.50 2.27 -11.82 -0.03 -1.52 16 19 C -0.11 -1.04 5.00 30.46 0.15 -0.89 16 20 C -0.58 -2.77 6.34 71.99 0.46 -2.31 16 21 S 2.41 30.23 5.30 -56.49 -0.30 29.94 16 22 O -0.98 -18.89 18.10 -127.38 -2.31 -21.20 16 23 O -0.99 -22.36 17.97 -127.38 -2.29 -24.65 16 24 C -0.58 -4.79 6.35 71.99 0.46 -4.33 16 25 C -0.10 -1.47 4.47 30.47 0.14 -1.33 16 26 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.02 1.01 5.98 -2.39 -0.01 1.00 16 30 H 0.06 2.95 6.33 -2.38 -0.02 2.94 16 31 H 0.06 3.03 5.85 -2.39 -0.01 3.02 16 32 H 0.03 1.09 7.98 -2.38 -0.02 1.07 16 33 H 0.25 13.38 8.31 -92.71 -0.77 12.61 16 34 H 0.06 1.99 8.03 -2.39 -0.02 1.97 16 35 H 0.07 2.06 7.95 -2.38 -0.02 2.04 16 36 H 0.04 1.70 5.92 -2.38 -0.01 1.69 16 37 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.42 5.79 7.70 -92.71 -0.71 5.08 16 39 H 0.16 0.55 8.09 -2.39 -0.02 0.53 16 40 H 0.08 1.04 8.03 -2.38 -0.02 1.02 16 41 H 0.12 0.69 7.18 -2.39 -0.02 0.68 16 42 H 0.16 0.41 8.14 -2.39 -0.02 0.39 16 43 H 0.18 -0.49 8.14 -2.39 -0.02 -0.51 16 44 H 0.17 0.17 8.14 -2.39 -0.02 0.15 16 45 H 0.15 1.04 8.14 -2.38 -0.02 1.02 16 46 H 0.09 1.56 7.72 -2.39 -0.02 1.54 16 47 H 0.07 1.34 8.02 -2.39 -0.02 1.32 16 Total: -1.00 -82.09 379.08 -1.39 -83.47 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: 0.25 Total: 9.57 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: 5.35 Total: -3.14 kcal Atomic # 7 Polarization: -94.07 SS G_CDS: -4.08 Total: -98.15 kcal Atomic # 8 Polarization: -62.75 SS G_CDS: -4.64 Total: -67.39 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Atomic # 16 Polarization: 30.23 SS G_CDS: -0.30 Total: 29.94 kcal Total: -82.09 -1.39 -83.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691193850.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.573 kcal (2) G-P(sol) polarization free energy of solvation -82.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds