Wall clock time and date at job start Tue Mar 31 2020 16:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47164 * 2 1 4 4 N 1.46500 * 109.47189 * 180.02562 * 3 2 1 5 5 C 1.36939 * 120.00124 * 275.31609 * 4 3 2 6 6 H 1.08003 * 120.00382 * 37.57005 * 5 4 3 7 7 C 1.38811 * 119.99933 * 217.58324 * 5 4 3 8 8 N 1.31616 * 120.00079 * 21.41403 * 7 5 4 9 9 Si 1.86805 * 119.99822 * 201.41870 * 7 5 4 10 10 H 1.48502 * 109.47171 * 59.99620 * 9 7 5 11 11 H 1.48503 * 109.46950 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47171 * 299.99775 * 9 7 5 13 13 C 1.46498 * 120.00268 * 95.30801 * 4 3 2 14 14 C 1.52998 * 109.47404 * 270.00315 * 13 4 3 15 15 N 1.46505 * 109.47144 * 179.97438 * 14 13 4 16 16 C 1.34772 * 119.99699 * 180.02562 * 15 14 13 17 17 O 1.21509 * 120.00460 * 0.02562 * 16 15 14 18 18 C 1.48168 * 119.99509 * 180.02562 * 16 15 14 19 19 C 1.40173 * 121.00315 * 359.97438 * 18 16 15 20 20 C 1.38014 * 118.70763 * 179.70269 * 19 18 16 21 21 N 1.31659 * 121.43052 * 0.28611 * 20 19 18 22 22 C 1.32952 * 122.26130 * 359.97438 * 21 20 19 23 23 C 1.38878 * 121.00132 * 180.24901 * 18 16 15 24 24 C 1.50972 * 133.29128 * 359.93085 * 23 18 16 25 25 C 1.51433 * 103.92150 * 180.33746 * 24 23 18 26 26 O 1.21277 * 126.45484 * 179.97438 * 25 24 23 27 27 N 1.34351 * 107.09163 * 359.97438 * 25 24 23 28 28 H 1.08998 * 109.46871 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46685 * 299.99553 * 1 2 3 30 30 H 1.09002 * 109.47263 * 59.99167 * 1 2 3 31 31 H 1.08998 * 109.46685 * 240.00447 * 2 1 3 32 32 H 1.08996 * 109.47621 * 120.00240 * 2 1 3 33 33 H 1.08998 * 109.46955 * 60.00611 * 3 2 1 34 34 H 1.08996 * 109.47048 * 300.00592 * 3 2 1 35 35 H 0.97001 * 119.99775 * 180.02562 * 8 7 5 36 36 H 1.09003 * 109.47218 * 149.99747 * 13 4 3 37 37 H 1.09009 * 109.46829 * 30.00183 * 13 4 3 38 38 H 1.09006 * 109.47132 * 60.00262 * 14 13 4 39 39 H 1.08995 * 109.47063 * 299.99597 * 14 13 4 40 40 H 0.96997 * 119.99633 * 359.97438 * 15 14 13 41 41 H 1.07997 * 120.64532 * 359.97438 * 19 18 16 42 42 H 1.07997 * 119.28357 * 180.25661 * 20 19 18 43 43 H 1.08998 * 110.53839 * 61.72137 * 24 23 18 44 44 H 1.09003 * 110.65195 * 299.00254 * 24 23 18 45 45 H 0.97008 * 123.79113 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1903 1.3325 1.1799 6 1 3.8186 0.6869 1.9619 7 6 5.3624 2.0510 1.3716 8 7 5.6025 3.1237 0.6479 9 14 6.5990 1.4951 2.6567 10 1 7.0676 0.1239 2.3322 11 1 7.7570 2.4248 2.6640 12 1 5.9556 1.4946 3.9951 13 6 4.2370 1.5601 -1.2641 14 6 4.4918 0.1648 -1.8378 15 7 5.2233 0.2824 -3.1017 16 6 5.5594 -0.8256 -3.7913 17 8 5.2553 -1.9221 -3.3652 18 6 6.2997 -0.7066 -5.0693 19 6 6.6606 0.5477 -5.5805 20 6 7.3550 0.6031 -6.7719 21 7 7.6755 -0.4904 -7.4314 22 6 7.3529 -1.7035 -6.9933 23 6 6.6520 -1.8341 -5.7995 24 6 6.4428 -3.3137 -5.5847 25 6 7.1040 -3.9536 -6.7874 26 8 7.1741 -5.1410 -7.0244 27 7 7.5983 -2.9583 -7.5424 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3634 0.5140 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.6768 1.9563 0.8900 34 1 1.6766 1.9564 -0.8899 35 1 6.4218 3.6256 0.7816 36 1 5.1895 2.0597 -1.0871 37 1 3.6476 2.1422 -1.9727 38 1 3.5393 -0.3347 -2.0149 39 1 5.0812 -0.4172 -1.1293 40 1 5.4651 1.1578 -3.4424 41 1 6.4041 1.4528 -5.0502 42 1 7.6414 1.5644 -7.1722 43 1 5.3790 -3.5502 -5.5621 44 1 6.9257 -3.6406 -4.6637 45 1 8.0742 -3.0987 -8.3759 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713547580.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:00 Heat of formation + Delta-G solvation = -5.109025 kcal Electronic energy + Delta-G solvation = -27969.506543 eV Core-core repulsion = 23987.861406 eV Total energy + Delta-G solvation = -3981.645137 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.09206 -39.81703 -38.86683 -36.57937 -36.40535 -34.47050 -33.51336 -32.94160 -31.17963 -30.65185 -28.94611 -28.08408 -25.62752 -24.83532 -23.51072 -22.67484 -21.73023 -21.10460 -20.78269 -20.17690 -18.63662 -17.59740 -17.22364 -16.67689 -16.56519 -15.93341 -15.39096 -15.24782 -15.16709 -14.82690 -14.41357 -14.38176 -14.16092 -13.94747 -13.80021 -13.52198 -13.09679 -13.00813 -12.87410 -12.70215 -12.58246 -11.63620 -11.59607 -11.39160 -11.25131 -11.00342 -10.78382 -10.64034 -10.53554 -10.43775 -10.34078 -10.13871 -10.06307 -9.98629 -9.79165 -9.59911 -8.72915 -8.70686 -8.54549 -6.70034 -5.91407 -3.50067 0.38815 0.56998 2.00145 2.24928 2.87008 3.15296 3.32045 3.37029 3.41149 3.55881 3.60028 4.07319 4.24525 4.36471 4.43120 4.46821 4.80892 5.05483 5.18832 5.19725 5.31246 5.40564 5.50061 5.61355 5.64795 5.70687 5.89380 5.95466 6.01855 6.10918 6.11984 6.22522 6.34130 6.37879 6.45671 6.55884 6.59322 6.66476 6.89334 6.92385 7.11956 7.32171 7.42181 7.59298 7.67073 7.73557 8.27180 8.40580 9.06890 9.68553 10.26150 11.08829 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012246 B = 0.002879 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2285.923198 B = 9723.463099 C =10470.769690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.145 4.145 3 C 0.147 3.853 4 N -0.579 5.579 5 C -0.263 4.263 6 H 0.062 0.938 7 C 0.015 3.985 8 N -0.887 5.887 9 Si 0.896 3.104 10 H -0.281 1.281 11 H -0.290 1.290 12 H -0.280 1.280 13 C 0.137 3.863 14 C 0.095 3.905 15 N -0.706 5.706 16 C 0.547 3.453 17 O -0.530 6.530 18 C -0.031 4.031 19 C -0.163 4.163 20 C 0.139 3.861 21 N -0.492 5.492 22 C 0.346 3.654 23 C -0.132 4.132 24 C -0.106 4.106 25 C 0.537 3.463 26 O -0.493 6.493 27 N -0.645 5.645 28 H 0.043 0.957 29 H 0.049 0.951 30 H 0.046 0.954 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.046 0.954 34 H 0.034 0.966 35 H 0.256 0.744 36 H 0.099 0.901 37 H 0.030 0.970 38 H 0.056 0.944 39 H 0.068 0.932 40 H 0.398 0.602 41 H 0.152 0.848 42 H 0.174 0.826 43 H 0.135 0.865 44 H 0.136 0.864 45 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.065 -3.174 -15.057 15.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.185 4.185 3 C 0.021 3.979 4 N -0.298 5.298 5 C -0.393 4.393 6 H 0.079 0.921 7 C -0.185 4.185 8 N -0.529 5.529 9 Si 0.725 3.275 10 H -0.208 1.208 11 H -0.216 1.216 12 H -0.206 1.206 13 C 0.009 3.991 14 C -0.030 4.030 15 N -0.357 5.357 16 C 0.332 3.668 17 O -0.407 6.407 18 C -0.042 4.042 19 C -0.185 4.185 20 C -0.019 4.019 21 N -0.208 5.208 22 C 0.114 3.886 23 C -0.138 4.138 24 C -0.145 4.145 25 C 0.324 3.676 26 O -0.366 6.366 27 N -0.292 5.292 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.065 0.935 34 H 0.053 0.947 35 H 0.066 0.934 36 H 0.117 0.883 37 H 0.048 0.952 38 H 0.074 0.926 39 H 0.087 0.913 40 H 0.233 0.767 41 H 0.169 0.831 42 H 0.190 0.810 43 H 0.153 0.847 44 H 0.153 0.847 45 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 1.380 -4.473 -15.476 16.169 hybrid contribution 0.701 0.145 0.762 1.045 sum 2.081 -4.328 -14.715 15.479 Atomic orbital electron populations 1.21723 0.97314 1.00440 1.01017 1.22184 0.93843 1.00893 1.01570 1.20949 0.84972 0.92999 0.98984 1.43585 0.99454 1.84770 1.02003 1.18986 1.05708 1.20556 0.94004 0.92059 1.25170 1.00780 0.94473 0.98089 1.69979 1.25741 1.14673 1.42510 0.86478 0.80989 0.78311 0.81696 1.20767 1.21552 1.20566 1.21069 1.00458 0.91005 0.86551 1.22609 0.94941 1.03231 0.82175 1.46075 1.57017 1.08178 1.24408 1.18094 0.80002 0.85212 0.83539 1.90771 1.54461 1.26254 1.69244 1.19762 0.97294 0.92150 0.95014 1.22356 1.00602 0.97469 0.98097 1.22454 0.93101 0.95423 0.90880 1.66599 1.22479 0.96383 1.35298 1.18244 0.93994 0.86175 0.90186 1.20402 1.01698 0.95885 0.95858 1.21066 1.04990 0.89942 0.98546 1.20679 0.77294 0.85044 0.84541 1.90840 1.57811 1.13517 1.74385 1.43521 1.55732 1.03895 1.26088 0.93787 0.93183 0.93469 0.92960 0.92331 0.93519 0.94723 0.93419 0.88313 0.95199 0.92574 0.91323 0.76704 0.83071 0.80952 0.84732 0.84665 0.74303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.91 37.16 0.37 -1.71 16 2 C -0.14 -2.51 6.23 -26.73 -0.17 -2.68 16 3 C 0.15 2.89 5.72 -4.04 -0.02 2.87 16 4 N -0.58 -13.18 2.43 -173.23 -0.42 -13.60 16 5 C -0.26 -6.73 9.45 -15.06 -0.14 -6.87 16 6 H 0.06 1.59 7.92 -52.48 -0.42 1.17 16 7 C 0.02 0.40 4.95 -17.43 -0.09 0.31 16 8 N -0.89 -23.55 11.47 55.49 0.64 -22.91 16 9 Si 0.90 20.62 29.60 -169.99 -5.03 15.59 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 12 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 13 C 0.14 2.79 5.45 -4.04 -0.02 2.77 16 14 C 0.10 1.75 6.00 -4.04 -0.02 1.72 16 15 N -0.71 -10.31 5.52 -61.15 -0.34 -10.65 16 16 C 0.55 8.11 7.80 -12.18 -0.10 8.02 16 17 O -0.53 -9.50 15.64 5.36 0.08 -9.42 16 18 C -0.03 -0.36 5.89 -104.86 -0.62 -0.98 16 19 C -0.16 -1.43 9.64 -38.94 -0.38 -1.81 16 20 C 0.14 1.12 11.14 -17.71 -0.20 0.92 16 21 N -0.49 -5.01 10.36 -12.38 -0.13 -5.13 16 22 C 0.35 3.69 8.27 -154.44 -1.28 2.41 16 23 C -0.13 -1.52 6.17 -103.95 -0.64 -2.16 16 24 C -0.11 -1.17 5.63 -28.54 -0.16 -1.34 16 25 C 0.54 6.07 8.71 -10.82 -0.09 5.97 16 26 O -0.49 -6.99 18.03 5.56 0.10 -6.89 16 27 N -0.65 -6.20 5.85 -11.22 -0.07 -6.27 16 28 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.92 6.64 -51.93 -0.34 0.58 16 32 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 33 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 34 H 0.03 0.63 7.83 -51.93 -0.41 0.23 16 35 H 0.26 6.60 8.31 -40.82 -0.34 6.26 16 36 H 0.10 2.27 5.52 -51.93 -0.29 1.99 16 37 H 0.03 0.56 7.86 -51.92 -0.41 0.15 16 38 H 0.06 1.05 6.64 -51.93 -0.34 0.71 16 39 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 40 H 0.40 4.68 6.63 -40.82 -0.27 4.41 16 41 H 0.15 0.97 6.56 -52.49 -0.34 0.62 16 42 H 0.17 0.80 8.06 -52.49 -0.42 0.37 16 43 H 0.14 1.45 8.14 -51.93 -0.42 1.02 16 44 H 0.14 1.50 8.14 -51.93 -0.42 1.08 16 45 H 0.42 3.14 8.96 -40.82 -0.37 2.78 16 LS Contribution 377.21 15.07 5.68 5.68 Total: -1.00 -31.18 377.21 -9.16 -40.34 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -6.12 Total: 5.79 kcal Atomic # 6 Polarization: 11.01 SS G_CDS: -3.56 Total: 7.45 kcal Atomic # 7 Polarization: -58.24 SS G_CDS: -0.32 Total: -58.56 kcal Atomic # 8 Polarization: -16.49 SS G_CDS: 0.18 Total: -16.30 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.03 Total: 15.59 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.18 -9.16 -40.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713547580.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.235 kcal (2) G-P(sol) polarization free energy of solvation -31.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds