Wall clock time and date at job start Tue Mar 31 2020 16:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47164 * 2 1 4 4 N 1.46500 * 109.47189 * 180.02562 * 3 2 1 5 5 C 1.36939 * 120.00124 * 275.31609 * 4 3 2 6 6 H 1.08003 * 120.00382 * 37.57005 * 5 4 3 7 7 C 1.38811 * 119.99933 * 217.58324 * 5 4 3 8 8 N 1.31616 * 120.00079 * 21.41403 * 7 5 4 9 9 Si 1.86805 * 119.99822 * 201.41870 * 7 5 4 10 10 H 1.48502 * 109.47171 * 59.99620 * 9 7 5 11 11 H 1.48503 * 109.46950 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47171 * 299.99775 * 9 7 5 13 13 C 1.46498 * 120.00268 * 95.30801 * 4 3 2 14 14 C 1.52998 * 109.47404 * 270.00315 * 13 4 3 15 15 N 1.46505 * 109.47144 * 179.97438 * 14 13 4 16 16 C 1.34772 * 119.99699 * 180.02562 * 15 14 13 17 17 O 1.21509 * 120.00460 * 0.02562 * 16 15 14 18 18 C 1.48168 * 119.99509 * 180.02562 * 16 15 14 19 19 C 1.40173 * 121.00315 * 359.97438 * 18 16 15 20 20 C 1.38014 * 118.70763 * 179.70269 * 19 18 16 21 21 N 1.31659 * 121.43052 * 0.28611 * 20 19 18 22 22 C 1.32952 * 122.26130 * 359.97438 * 21 20 19 23 23 C 1.38878 * 121.00132 * 180.24901 * 18 16 15 24 24 C 1.50972 * 133.29128 * 359.93085 * 23 18 16 25 25 C 1.51433 * 103.92150 * 180.33746 * 24 23 18 26 26 O 1.21277 * 126.45484 * 179.97438 * 25 24 23 27 27 N 1.34351 * 107.09163 * 359.97438 * 25 24 23 28 28 H 1.08998 * 109.46871 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46685 * 299.99553 * 1 2 3 30 30 H 1.09002 * 109.47263 * 59.99167 * 1 2 3 31 31 H 1.08998 * 109.46685 * 240.00447 * 2 1 3 32 32 H 1.08996 * 109.47621 * 120.00240 * 2 1 3 33 33 H 1.08998 * 109.46955 * 60.00611 * 3 2 1 34 34 H 1.08996 * 109.47048 * 300.00592 * 3 2 1 35 35 H 0.97001 * 119.99775 * 180.02562 * 8 7 5 36 36 H 1.09003 * 109.47218 * 149.99747 * 13 4 3 37 37 H 1.09009 * 109.46829 * 30.00183 * 13 4 3 38 38 H 1.09006 * 109.47132 * 60.00262 * 14 13 4 39 39 H 1.08995 * 109.47063 * 299.99597 * 14 13 4 40 40 H 0.96997 * 119.99633 * 359.97438 * 15 14 13 41 41 H 1.07997 * 120.64532 * 359.97438 * 19 18 16 42 42 H 1.07997 * 119.28357 * 180.25661 * 20 19 18 43 43 H 1.08998 * 110.53839 * 61.72137 * 24 23 18 44 44 H 1.09003 * 110.65195 * 299.00254 * 24 23 18 45 45 H 0.97008 * 123.79113 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1903 1.3325 1.1799 6 1 3.8186 0.6869 1.9619 7 6 5.3624 2.0510 1.3716 8 7 5.6025 3.1237 0.6479 9 14 6.5990 1.4951 2.6567 10 1 7.0676 0.1239 2.3322 11 1 7.7570 2.4248 2.6640 12 1 5.9556 1.4946 3.9951 13 6 4.2370 1.5601 -1.2641 14 6 4.4918 0.1648 -1.8378 15 7 5.2233 0.2824 -3.1017 16 6 5.5594 -0.8256 -3.7913 17 8 5.2553 -1.9221 -3.3652 18 6 6.2997 -0.7066 -5.0693 19 6 6.6606 0.5477 -5.5805 20 6 7.3550 0.6031 -6.7719 21 7 7.6755 -0.4904 -7.4314 22 6 7.3529 -1.7035 -6.9933 23 6 6.6520 -1.8341 -5.7995 24 6 6.4428 -3.3137 -5.5847 25 6 7.1040 -3.9536 -6.7874 26 8 7.1741 -5.1410 -7.0244 27 7 7.5983 -2.9583 -7.5424 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3634 0.5140 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.6768 1.9563 0.8900 34 1 1.6766 1.9564 -0.8899 35 1 6.4218 3.6256 0.7816 36 1 5.1895 2.0597 -1.0871 37 1 3.6476 2.1422 -1.9727 38 1 3.5393 -0.3347 -2.0149 39 1 5.0812 -0.4172 -1.1293 40 1 5.4651 1.1578 -3.4424 41 1 6.4041 1.4528 -5.0502 42 1 7.6414 1.5644 -7.1722 43 1 5.3790 -3.5502 -5.5621 44 1 6.9257 -3.6406 -4.6637 45 1 8.0742 -3.0987 -8.3759 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713547580.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:59 Heat of formation + Delta-G solvation = -25.504842 kcal Electronic energy + Delta-G solvation = -27970.390972 eV Core-core repulsion = 23987.861406 eV Total energy + Delta-G solvation = -3982.529566 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.94537 -40.90825 -39.89284 -38.22027 -37.29973 -35.83209 -34.60054 -34.38165 -32.65863 -31.75091 -29.98312 -29.34767 -27.31523 -25.97542 -24.80363 -23.60900 -22.67000 -22.49801 -22.03266 -21.66832 -19.69720 -18.71483 -18.30761 -18.06812 -17.46633 -17.08442 -16.95446 -16.40402 -16.27225 -16.10294 -15.85813 -15.63242 -15.29442 -14.97235 -14.94751 -14.57332 -14.51065 -14.29518 -14.27392 -13.89072 -13.42982 -13.30732 -13.05379 -12.88925 -12.61978 -12.50353 -12.23514 -12.21265 -12.01712 -11.84996 -11.65681 -11.61949 -11.43369 -11.25008 -10.95286 -10.59548 -10.50901 -10.05359 -9.49321 -8.56265 -7.84165 -5.46397 -0.49004 -0.21816 1.11983 1.44702 1.46061 1.49702 1.55194 1.81151 1.98630 2.51354 2.69822 2.75650 3.20235 3.24426 3.39989 3.54799 3.62557 3.80899 4.09999 4.23124 4.25730 4.29574 4.37194 4.42143 4.48606 4.59048 4.69820 4.71135 4.76859 4.87799 4.89980 5.02444 5.17092 5.17993 5.25748 5.28273 5.32730 5.35745 5.46404 5.59506 5.64890 5.68533 5.77080 6.45059 6.51051 6.53037 6.79737 7.10098 7.18742 7.85198 8.36762 9.11300 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012246 B = 0.002879 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2285.923198 B = 9723.463099 C =10470.769690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.135 4.135 3 C 0.145 3.855 4 N -0.596 5.596 5 C -0.272 4.272 6 H 0.049 0.951 7 C -0.023 4.023 8 N -0.907 5.907 9 Si 0.946 3.054 10 H -0.287 1.287 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.144 3.856 14 C 0.118 3.882 15 N -0.698 5.698 16 C 0.548 3.452 17 O -0.567 6.567 18 C -0.045 4.045 19 C -0.148 4.148 20 C 0.148 3.852 21 N -0.496 5.496 22 C 0.339 3.661 23 C -0.146 4.146 24 C -0.106 4.106 25 C 0.544 3.456 26 O -0.526 6.526 27 N -0.633 5.633 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.047 0.953 32 H 0.037 0.963 33 H 0.033 0.967 34 H 0.052 0.948 35 H 0.255 0.745 36 H 0.076 0.924 37 H 0.049 0.951 38 H 0.052 0.948 39 H 0.033 0.967 40 H 0.414 0.586 41 H 0.179 0.821 42 H 0.216 0.784 43 H 0.134 0.866 44 H 0.130 0.870 45 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.076 -1.838 -16.628 16.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.174 4.174 3 C 0.020 3.980 4 N -0.317 5.317 5 C -0.402 4.402 6 H 0.067 0.933 7 C -0.221 4.221 8 N -0.550 5.550 9 Si 0.775 3.225 10 H -0.213 1.213 11 H -0.213 1.213 12 H -0.203 1.203 13 C 0.017 3.983 14 C -0.008 4.008 15 N -0.350 5.350 16 C 0.335 3.665 17 O -0.447 6.447 18 C -0.056 4.056 19 C -0.170 4.170 20 C -0.010 4.010 21 N -0.212 5.212 22 C 0.108 3.892 23 C -0.152 4.152 24 C -0.145 4.145 25 C 0.333 3.667 26 O -0.401 6.401 27 N -0.280 5.280 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.052 0.948 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.094 0.906 37 H 0.067 0.933 38 H 0.071 0.929 39 H 0.051 0.949 40 H 0.252 0.748 41 H 0.196 0.804 42 H 0.232 0.768 43 H 0.152 0.848 44 H 0.148 0.852 45 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 1.394 -3.105 -17.084 17.420 hybrid contribution 0.673 -0.191 1.214 1.401 sum 2.067 -3.297 -15.870 16.340 Atomic orbital electron populations 1.21659 0.94419 1.01704 1.01981 1.22015 0.96289 0.98856 1.00285 1.21048 0.83384 0.94444 0.99116 1.43817 1.00806 1.85043 1.01999 1.19093 1.06269 1.19994 0.94846 0.93316 1.25665 1.01934 0.94702 0.99823 1.70055 1.25951 1.15298 1.43669 0.85694 0.79306 0.77454 0.80078 1.21337 1.21342 1.20343 1.20956 0.99403 0.91819 0.86167 1.22027 0.94478 1.01266 0.83000 1.45823 1.56779 1.09248 1.23178 1.18528 0.79365 0.84389 0.84251 1.90753 1.55880 1.27616 1.70402 1.19546 0.98524 0.93685 0.93893 1.22693 0.99126 0.97012 0.98129 1.23186 0.91444 0.96262 0.90061 1.66717 1.22360 0.96472 1.35614 1.18259 0.94322 0.86602 0.90009 1.20442 1.02454 0.95782 0.96530 1.21011 1.04891 0.90292 0.98288 1.20566 0.76926 0.84669 0.84580 1.90822 1.59261 1.14808 1.75177 1.43336 1.55152 1.03379 1.26171 0.92403 0.92717 0.92009 0.93420 0.94436 0.94813 0.93013 0.93605 0.90589 0.93318 0.92924 0.94859 0.74822 0.80407 0.76775 0.84824 0.85198 0.73049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.67 9.91 71.98 0.71 -2.96 16 2 C -0.13 -4.60 6.23 30.60 0.19 -4.41 16 3 C 0.15 5.65 5.72 86.38 0.49 6.14 16 4 N -0.60 -27.29 2.43 -701.99 -1.71 -29.00 16 5 C -0.27 -14.11 9.45 84.03 0.79 -13.32 16 6 H 0.05 2.60 7.92 -2.91 -0.02 2.58 16 7 C -0.02 -1.18 4.95 84.86 0.42 -0.76 16 8 N -0.91 -48.20 11.47 21.65 0.25 -47.96 16 9 Si 0.95 42.75 29.60 68.60 2.03 44.78 16 10 H -0.29 -13.09 7.11 99.48 0.71 -12.39 16 11 H -0.29 -12.81 7.11 99.48 0.71 -12.11 16 12 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 13 C 0.14 5.81 5.45 86.38 0.47 6.28 16 14 C 0.12 4.36 6.00 86.38 0.52 4.88 16 15 N -0.70 -19.75 5.52 -465.66 -2.57 -22.31 16 16 C 0.55 15.98 7.80 86.88 0.68 16.66 16 17 O -0.57 -20.70 15.64 -3.74 -0.06 -20.76 16 18 C -0.05 -1.00 5.89 -20.02 -0.12 -1.11 16 19 C -0.15 -2.10 9.64 22.69 0.22 -1.88 16 20 C 0.15 1.79 11.14 84.67 0.94 2.74 16 21 N -0.50 -8.62 10.36 -193.07 -2.00 -10.62 16 22 C 0.34 6.68 8.27 132.83 1.10 7.78 16 23 C -0.15 -3.24 6.17 -19.43 -0.12 -3.36 16 24 C -0.11 -2.38 5.63 29.42 0.17 -2.21 16 25 C 0.54 12.33 8.71 87.96 0.77 13.10 16 26 O -0.53 -15.14 18.03 -3.02 -0.05 -15.20 16 27 N -0.63 -11.59 5.85 -308.03 -1.80 -13.39 16 28 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.05 1.66 6.64 -2.39 -0.02 1.64 16 32 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.03 1.38 8.08 -2.39 -0.02 1.36 16 34 H 0.05 1.81 7.83 -2.39 -0.02 1.80 16 35 H 0.25 13.11 8.31 -92.71 -0.77 12.34 16 36 H 0.08 3.49 5.52 -2.39 -0.01 3.48 16 37 H 0.05 1.76 7.86 -2.38 -0.02 1.74 16 38 H 0.05 1.98 6.64 -2.38 -0.02 1.96 16 39 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.41 8.89 6.63 -92.71 -0.61 8.28 16 41 H 0.18 1.51 6.56 -2.91 -0.02 1.49 16 42 H 0.22 0.78 8.06 -2.91 -0.02 0.75 16 43 H 0.13 2.99 8.14 -2.39 -0.02 2.97 16 44 H 0.13 3.04 8.14 -2.39 -0.02 3.02 16 45 H 0.43 5.95 8.96 -92.70 -0.83 5.12 16 Total: -1.00 -68.43 377.21 0.92 -67.51 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: -0.40 Total: 19.39 kcal Atomic # 6 Polarization: 20.33 SS G_CDS: 7.23 Total: 27.56 kcal Atomic # 7 Polarization: -115.45 SS G_CDS: -7.83 Total: -123.29 kcal Atomic # 8 Polarization: -35.85 SS G_CDS: -0.11 Total: -35.96 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -68.43 0.92 -67.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713547580.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.008 kcal (2) G-P(sol) polarization free energy of solvation -68.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds