Wall clock time and date at job start Tue Mar 31 2020 16:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47280 * 2 1 4 4 N 1.46499 * 109.47090 * 179.97438 * 3 2 1 5 5 C 1.36937 * 120.00014 * 262.07273 * 4 3 2 6 6 H 1.07998 * 119.99828 * 143.73111 * 5 4 3 7 7 C 1.38812 * 120.00488 * 323.72727 * 5 4 3 8 8 N 1.31625 * 119.99772 * 339.48963 * 7 5 4 9 9 Si 1.86801 * 120.00263 * 159.47921 * 7 5 4 10 10 H 1.48496 * 109.47037 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.46804 * 120.00367 * 9 7 5 12 12 H 1.48504 * 109.47196 * 240.00529 * 9 7 5 13 13 C 1.46495 * 119.99808 * 82.07824 * 4 3 2 14 14 C 1.53005 * 109.47389 * 89.99871 * 13 4 3 15 15 N 1.46492 * 109.47012 * 179.97438 * 14 13 4 16 16 C 1.34784 * 119.99815 * 179.97438 * 15 14 13 17 17 O 1.21275 * 119.99832 * 4.65232 * 16 15 14 18 18 C 1.50704 * 119.99895 * 184.64914 * 16 15 14 19 19 S 1.81392 * 112.90823 * 302.19685 * 18 16 15 20 20 C 1.81406 * 101.92475 * 310.55622 * 19 18 16 21 21 O 1.42099 * 108.58260 * 65.04140 * 19 18 16 22 22 O 1.42105 * 108.58111 * 196.06992 * 19 18 16 23 23 C 1.53783 * 113.61332 * 73.45056 * 18 16 15 24 24 C 1.53778 * 87.08198 * 89.11058 * 23 18 16 25 25 C 1.53781 * 87.08143 * 25.43261 * 24 23 18 26 26 H 1.08998 * 109.47483 * 59.99974 * 1 2 3 27 27 H 1.09001 * 109.47543 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47382 * 299.99228 * 1 2 3 29 29 H 1.08997 * 109.47087 * 240.00198 * 2 1 3 30 30 H 1.09005 * 109.47313 * 120.00362 * 2 1 3 31 31 H 1.09009 * 109.46454 * 60.00562 * 3 2 1 32 32 H 1.08991 * 109.47264 * 300.00315 * 3 2 1 33 33 H 0.96999 * 119.99585 * 179.97438 * 8 7 5 34 34 H 1.09003 * 109.47013 * 329.99490 * 13 4 3 35 35 H 1.09000 * 109.47053 * 209.99920 * 13 4 3 36 36 H 1.09000 * 109.46857 * 59.99888 * 14 13 4 37 37 H 1.08996 * 109.46589 * 300.00024 * 14 13 4 38 38 H 0.97003 * 120.00489 * 359.97438 * 15 14 13 39 39 H 1.08998 * 109.46986 * 65.61321 * 20 19 18 40 40 H 1.08997 * 109.47418 * 185.61626 * 20 19 18 41 41 H 1.09003 * 109.46494 * 305.61579 * 20 19 18 42 42 H 1.09006 * 113.61151 * 334.56287 * 23 18 16 43 43 H 1.09000 * 113.60875 * 203.66680 * 23 18 16 44 44 H 1.08999 * 113.61298 * 139.97446 * 24 23 18 45 45 H 1.08992 * 113.62178 * 270.88535 * 24 23 18 46 46 H 1.09002 * 113.61665 * 89.10932 * 25 24 23 47 47 H 1.09002 * 113.62019 * 219.92970 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1892 1.6061 1.1755 6 1 5.1121 1.0706 1.3419 7 6 3.6966 2.4604 2.1524 8 7 2.8330 3.4001 1.8303 9 14 4.2590 2.2764 3.9242 10 1 5.2256 1.1534 4.0225 11 1 4.9138 3.5329 4.3686 12 1 3.0851 1.9968 4.7897 13 6 4.2379 1.2674 -1.2556 14 6 4.4932 2.6351 -1.8921 15 7 5.2267 2.4600 -3.1480 16 6 5.5636 3.5355 -3.8872 17 8 5.3348 4.6520 -3.4727 18 6 6.2248 3.3506 -5.2288 19 16 7.7726 2.4101 -5.1296 20 6 8.6446 3.2639 -3.7874 21 8 7.4725 1.0876 -4.7051 22 8 8.4983 2.6037 -6.3360 23 6 5.2680 2.8486 -6.3231 24 6 4.9581 4.3253 -6.6196 25 6 6.3450 4.6511 -6.0407 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5137 0.8901 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6766 1.9562 0.8901 32 1 1.6766 1.9563 -0.8899 33 1 2.4885 3.9968 2.5131 34 1 3.6491 0.6536 -1.9373 35 1 5.1902 0.7764 -1.0553 36 1 5.0821 3.2488 -1.2104 37 1 3.5409 3.1260 -2.0924 38 1 5.4699 1.5701 -3.4477 39 1 8.1006 3.1231 -2.8534 40 1 9.6495 2.8535 -3.6880 41 1 8.7075 4.3282 -4.0143 42 1 4.4143 2.2926 -5.9352 43 1 5.7721 2.3352 -7.1419 44 1 4.8658 4.5472 -7.6828 45 1 4.1337 4.7256 -6.0296 46 1 7.1436 4.6305 -6.7823 47 1 6.3614 5.5512 -5.4261 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713551196.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:11 Heat of formation + Delta-G solvation = -90.706441 kcal Electronic energy + Delta-G solvation = -27910.676795 eV Core-core repulsion = 24028.471075 eV Total energy + Delta-G solvation = -3882.205720 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.67037 -38.94803 -38.21607 -37.95958 -37.25277 -35.98638 -34.19161 -33.12002 -30.71894 -29.97314 -27.80976 -27.39383 -26.82726 -25.10044 -23.13952 -22.64506 -21.60031 -20.82769 -20.05801 -18.96037 -18.63374 -17.57031 -17.32492 -17.18362 -16.77244 -16.70805 -16.41337 -15.98634 -15.73397 -15.53092 -14.95322 -14.79489 -14.47117 -14.17778 -14.14670 -14.07039 -13.65379 -13.59851 -13.58419 -13.43377 -13.29627 -13.23113 -13.19338 -12.82267 -12.58967 -12.49015 -12.20310 -12.18659 -12.06615 -12.01288 -11.77333 -11.67487 -11.65199 -11.30393 -11.26328 -10.95961 -10.53657 -10.21648 -8.62973 -7.86545 -5.46135 -1.21195 1.22258 1.44201 1.48151 1.57160 1.59040 1.85909 2.42867 2.50360 2.62123 3.09643 3.23760 3.24268 3.46961 3.66336 3.78253 3.94756 4.02981 4.18734 4.23292 4.31486 4.35004 4.53141 4.53338 4.63708 4.67506 4.72693 4.81126 4.82851 4.89061 4.92036 4.99419 5.07111 5.09497 5.14280 5.26821 5.29083 5.35054 5.40979 5.57527 5.68336 5.87823 6.35388 6.45508 7.00114 7.15065 7.82511 8.34229 9.12158 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014509 B = 0.003304 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.311041 B = 8472.307912 C = 9120.633120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.131 4.131 3 C 0.150 3.850 4 N -0.594 5.594 5 C -0.269 4.269 6 H 0.062 0.938 7 C -0.034 4.034 8 N -0.917 5.917 9 Si 0.955 3.045 10 H -0.265 1.265 11 H -0.294 1.294 12 H -0.289 1.289 13 C 0.138 3.862 14 C 0.119 3.881 15 N -0.714 5.714 16 C 0.546 3.454 17 O -0.553 6.553 18 C -0.608 4.608 19 S 2.446 3.554 20 C -0.654 4.654 21 O -0.952 6.952 22 O -0.941 6.941 23 C -0.096 4.096 24 C -0.125 4.125 25 C -0.097 4.097 26 H 0.055 0.945 27 H 0.066 0.934 28 H 0.041 0.959 29 H 0.056 0.944 30 H 0.041 0.959 31 H 0.062 0.938 32 H 0.017 0.983 33 H 0.251 0.749 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.040 0.960 37 H 0.039 0.961 38 H 0.416 0.584 39 H 0.124 0.876 40 H 0.156 0.844 41 H 0.150 0.850 42 H 0.092 0.908 43 H 0.127 0.873 44 H 0.107 0.893 45 H 0.069 0.931 46 H 0.133 0.867 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.560 -2.192 -17.540 18.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.170 4.170 3 C 0.025 3.975 4 N -0.315 5.315 5 C -0.399 4.399 6 H 0.079 0.921 7 C -0.231 4.231 8 N -0.561 5.561 9 Si 0.784 3.216 10 H -0.190 1.190 11 H -0.221 1.221 12 H -0.215 1.215 13 C 0.011 3.989 14 C -0.007 4.007 15 N -0.368 5.368 16 C 0.330 3.670 17 O -0.431 6.431 18 C -0.699 4.699 19 S 2.629 3.371 20 C -0.806 4.806 21 O -0.949 6.949 22 O -0.938 6.938 23 C -0.134 4.134 24 C -0.163 4.163 25 C -0.135 4.135 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.060 0.940 29 H 0.075 0.925 30 H 0.060 0.940 31 H 0.080 0.920 32 H 0.035 0.965 33 H 0.060 0.940 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.253 0.747 39 H 0.142 0.858 40 H 0.174 0.826 41 H 0.168 0.832 42 H 0.111 0.889 43 H 0.145 0.855 44 H 0.125 0.875 45 H 0.088 0.912 46 H 0.151 0.849 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 6.556 -2.045 -17.621 18.912 hybrid contribution -0.109 0.690 1.812 1.942 sum 6.447 -1.355 -15.809 17.127 Atomic orbital electron populations 1.21639 0.95091 1.01713 1.01245 1.21938 0.95842 0.98718 1.00544 1.20882 0.82767 0.93987 0.99881 1.44029 1.01652 1.83672 1.02108 1.19353 1.07697 1.19406 0.93460 0.92058 1.25840 1.00008 0.94586 1.02698 1.70152 1.35074 1.17770 1.33067 0.85408 0.77729 0.77413 0.81081 1.18969 1.22111 1.21537 1.21203 0.97097 0.92597 0.88045 1.22000 0.94254 1.01496 0.82980 1.46196 1.57360 1.09856 1.23426 1.19216 0.79018 0.84746 0.84025 1.90711 1.54908 1.25405 1.72063 1.31605 1.21080 1.16809 1.00428 1.07225 0.76701 0.75987 0.77222 1.30231 1.15667 1.16524 1.18156 1.93562 1.84084 1.33940 1.83346 1.93577 1.69134 1.86886 1.44241 1.22830 0.97506 0.99355 0.93738 1.22744 0.96392 0.94124 1.03067 1.22826 1.00894 0.92313 0.97489 0.92564 0.91491 0.94024 0.92539 0.94028 0.91961 0.96481 0.94001 0.91435 0.92227 0.94166 0.94207 0.74651 0.85761 0.82583 0.83173 0.88942 0.85511 0.87491 0.91219 0.84945 0.89197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.27 9.91 71.98 0.71 -3.56 16 2 C -0.13 -4.87 6.24 30.59 0.19 -4.68 16 3 C 0.15 6.88 5.20 86.38 0.45 7.33 16 4 N -0.59 -28.28 2.44 -702.01 -1.72 -29.99 16 5 C -0.27 -14.21 9.48 84.03 0.80 -13.41 16 6 H 0.06 3.21 7.91 -2.91 -0.02 3.18 16 7 C -0.03 -1.83 4.91 84.86 0.42 -1.41 16 8 N -0.92 -52.95 11.44 21.65 0.25 -52.70 16 9 Si 0.96 43.90 29.60 68.60 2.03 45.93 16 10 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 11 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 12 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 13 C 0.14 5.33 5.79 86.38 0.50 5.83 16 14 C 0.12 4.65 6.00 86.38 0.52 5.17 16 15 N -0.71 -21.41 5.52 -463.07 -2.55 -23.97 16 16 C 0.55 15.84 5.63 87.66 0.49 16.33 16 17 O -0.55 -20.61 15.89 -3.01 -0.05 -20.66 16 18 C -0.61 -12.32 1.10 -11.01 -0.01 -12.34 16 19 S 2.45 46.78 4.97 -56.49 -0.28 46.50 16 20 C -0.65 -10.62 10.08 113.37 1.14 -9.47 16 21 O -0.95 -23.03 16.83 -127.37 -2.14 -25.18 16 22 O -0.94 -20.37 17.21 -127.37 -2.19 -22.56 16 23 C -0.10 -1.55 7.25 31.12 0.23 -1.32 16 24 C -0.13 -2.03 7.80 31.12 0.24 -1.79 16 25 C -0.10 -1.65 7.03 31.12 0.22 -1.43 16 26 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.07 1.71 8.14 -2.39 -0.02 1.70 16 28 H 0.04 1.34 8.14 -2.38 -0.02 1.32 16 29 H 0.06 1.92 7.97 -2.39 -0.02 1.90 16 30 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 31 H 0.06 3.31 5.51 -2.38 -0.01 3.30 16 32 H 0.02 0.76 8.13 -2.39 -0.02 0.74 16 33 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 34 H 0.07 2.27 7.90 -2.39 -0.02 2.25 16 35 H 0.06 2.21 8.04 -2.39 -0.02 2.19 16 36 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.42 10.55 7.15 -92.71 -0.66 9.89 16 39 H 0.12 2.37 7.84 -2.39 -0.02 2.35 16 40 H 0.16 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.15 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.09 1.51 8.09 -2.38 -0.02 1.49 16 43 H 0.13 1.43 8.10 -2.39 -0.02 1.41 16 44 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 46 H 0.13 1.61 7.38 -2.39 -0.02 1.59 16 47 H 0.09 1.75 7.36 -2.39 -0.02 1.74 16 Total: -1.00 -71.85 392.75 -0.47 -72.32 By element: Atomic # 1 Polarization: 24.77 SS G_CDS: 0.29 Total: 25.06 kcal Atomic # 6 Polarization: -20.64 SS G_CDS: 5.90 Total: -14.75 kcal Atomic # 7 Polarization: -102.64 SS G_CDS: -4.02 Total: -106.67 kcal Atomic # 8 Polarization: -64.01 SS G_CDS: -4.38 Total: -68.40 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Atomic # 16 Polarization: 46.78 SS G_CDS: -0.28 Total: 46.50 kcal Total: -71.85 -0.47 -72.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713551196.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.384 kcal (2) G-P(sol) polarization free energy of solvation -71.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds