Wall clock time and date at job start Tue Mar 31 2020 16:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47076 * 2 1 4 4 N 1.46500 * 109.47030 * 300.00020 * 3 2 1 5 5 C 1.36937 * 120.00138 * 180.02562 * 4 3 2 6 6 H 1.08003 * 120.00269 * 359.97438 * 5 4 3 7 7 C 1.38808 * 120.00284 * 180.02562 * 5 4 3 8 8 N 1.31617 * 119.99832 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00092 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47180 * 59.99840 * 9 7 5 11 11 H 1.48500 * 109.46983 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47249 * 299.99263 * 9 7 5 13 13 N 1.46494 * 109.47145 * 240.00201 * 2 1 3 14 14 C 1.34772 * 120.00318 * 183.95049 * 13 2 1 15 15 O 1.21290 * 119.99870 * 5.18818 * 14 13 2 16 16 C 1.50698 * 120.00296 * 185.19000 * 14 13 2 17 17 C 1.53005 * 109.47045 * 179.97438 * 16 14 13 18 18 C 1.53002 * 109.46800 * 179.97438 * 17 16 14 19 19 S 1.81407 * 109.46706 * 180.02562 * 18 17 16 20 20 C 1.81402 * 101.91747 * 180.02562 * 19 18 17 21 21 O 1.42099 * 108.57726 * 294.48879 * 19 18 17 22 22 O 1.42092 * 108.57752 * 65.51579 * 19 18 17 23 23 C 1.52998 * 109.47194 * 119.99556 * 2 1 3 24 24 C 1.53001 * 117.51697 * 348.45352 * 23 2 1 25 25 C 1.53005 * 117.49462 * 57.08212 * 23 2 1 26 26 H 1.09003 * 109.46706 * 300.00391 * 1 2 3 27 27 H 1.09000 * 109.47099 * 59.99667 * 1 2 3 28 28 H 1.08993 * 109.46980 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47388 * 59.99734 * 3 2 1 30 30 H 1.08993 * 109.47268 * 179.97438 * 3 2 1 31 31 H 0.96996 * 120.00435 * 359.97438 * 4 3 2 32 32 H 0.97008 * 119.99757 * 180.02562 * 8 7 5 33 33 H 0.97001 * 119.99703 * 3.94030 * 13 2 1 34 34 H 1.09002 * 109.46756 * 299.99546 * 16 14 13 35 35 H 1.08998 * 109.47335 * 59.99839 * 16 14 13 36 36 H 1.08997 * 109.47243 * 300.00282 * 17 16 14 37 37 H 1.09006 * 109.46919 * 60.00182 * 17 16 14 38 38 H 1.09002 * 109.47084 * 299.99857 * 18 17 16 39 39 H 1.08998 * 109.47252 * 60.00300 * 18 17 16 40 40 H 1.08994 * 109.47285 * 59.99596 * 20 19 18 41 41 H 1.09000 * 109.46744 * 179.97438 * 20 19 18 42 42 H 1.08996 * 109.47125 * 299.99646 * 20 19 18 43 43 H 1.08999 * 115.55380 * 202.74664 * 23 2 1 44 44 H 1.09002 * 117.50163 * 214.96480 * 24 23 2 45 45 H 1.08997 * 117.50077 * 359.97438 * 24 23 2 46 46 H 1.08998 * 117.49808 * 359.97048 * 25 23 2 47 47 H 1.08998 * 117.49901 * 144.97755 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5517 2.1331 -1.1962 5 6 1.8829 3.4440 -1.4132 6 1 2.5038 3.9689 -0.7023 7 6 1.4198 4.0985 -2.5463 8 7 0.6627 3.4590 -3.4124 9 14 1.8710 5.8869 -2.8419 10 1 3.3476 6.0166 -2.9310 11 1 1.2564 6.3490 -4.1123 12 1 1.3681 6.7167 -1.7177 13 7 2.0184 -0.6905 -1.1961 14 6 3.3408 -0.8838 -1.3701 15 8 4.1197 -0.5711 -0.4945 16 6 3.8517 -1.4883 -2.6524 17 6 5.3768 -1.5971 -2.5929 18 6 5.8954 -2.2114 -3.8946 19 16 7.7035 -2.3410 -3.8236 20 6 8.0898 -3.0782 -5.4355 21 8 8.2501 -1.0300 -3.7832 22 8 8.0512 -3.2694 -2.8057 23 6 2.0401 -0.7211 1.2493 24 6 1.0223 -1.0406 2.3461 25 6 1.5801 -2.1637 1.4694 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.6767 1.9564 0.8900 30 1 3.1300 1.4425 0.0005 31 1 0.9943 1.6616 -1.8349 32 1 0.3393 3.9163 -4.2044 33 1 1.3899 -1.0088 -1.8629 34 1 3.4212 -2.4812 -2.7829 35 1 3.5655 -0.8550 -3.4921 36 1 5.8070 -0.6041 -2.4625 37 1 5.6633 -2.2303 -1.7531 38 1 5.4652 -3.2045 -4.0244 39 1 5.6089 -1.5786 -4.7345 40 1 7.7390 -2.4193 -6.2298 41 1 9.1678 -3.2122 -5.5246 42 1 7.5947 -4.0455 -5.5206 43 1 3.0518 -0.4623 1.5615 44 1 1.3644 -0.9920 3.3799 45 1 -0.0109 -0.7367 2.1780 46 1 0.9139 -2.5988 0.7245 47 1 2.2894 -2.8540 1.9261 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714173280.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:05 Heat of formation + Delta-G solvation = -71.868471 kcal Electronic energy + Delta-G solvation = -27408.632474 eV Core-core repulsion = 23527.243630 eV Total energy + Delta-G solvation = -3881.388844 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.06064 -37.77858 -37.14304 -36.19511 -35.02391 -34.52748 -33.39259 -31.29646 -30.01885 -29.49549 -28.09309 -26.11576 -23.85978 -22.80536 -22.12962 -21.35035 -20.24046 -19.06276 -18.66565 -17.30792 -17.20130 -16.53078 -16.52120 -16.03075 -15.90013 -15.50342 -15.13830 -14.44578 -14.25907 -13.97554 -13.70337 -13.58597 -13.51762 -13.21990 -12.89944 -12.84892 -12.41504 -12.23777 -12.20799 -12.14445 -12.01073 -11.94792 -11.77887 -11.25178 -11.24700 -11.04746 -10.96457 -10.87447 -10.78232 -10.68640 -10.57972 -10.22985 -10.14714 -9.87444 -9.62999 -9.21167 -8.79754 -8.53224 -6.85449 -5.74419 -3.00472 -0.25658 2.52552 3.07761 3.32919 3.47174 3.50697 3.52476 3.53897 3.76526 4.13749 4.40942 4.43948 4.46354 4.60552 4.73956 4.83123 4.86703 5.11810 5.16255 5.20245 5.28397 5.33842 5.36063 5.40963 5.48669 5.61804 5.62771 5.69478 5.78141 5.92366 5.96380 6.03879 6.06537 6.23731 6.25712 6.30977 6.56000 6.59516 6.63771 6.92425 7.12715 7.74789 7.95211 8.45626 8.68502 9.57163 10.14667 10.50749 11.48765 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.008591 B = 0.003688 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3258.582172 B = 7590.045783 C =10120.691333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.200 3.800 3 C 0.146 3.854 4 N -0.726 5.726 5 C -0.231 4.231 6 H 0.068 0.932 7 C -0.015 4.015 8 N -0.938 5.938 9 Si 0.905 3.095 10 H -0.286 1.286 11 H -0.292 1.292 12 H -0.287 1.287 13 N -0.711 5.711 14 C 0.521 3.479 15 O -0.536 6.536 16 C -0.134 4.134 17 C -0.095 4.095 18 C -0.610 4.610 19 S 2.422 3.578 20 C -0.659 4.659 21 O -0.935 6.935 22 O -0.940 6.940 23 C -0.140 4.140 24 C -0.184 4.184 25 C -0.175 4.175 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.052 0.948 29 H 0.025 0.975 30 H 0.039 0.961 31 H 0.381 0.619 32 H 0.253 0.747 33 H 0.396 0.604 34 H 0.090 0.910 35 H 0.100 0.900 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.131 0.869 39 H 0.135 0.865 40 H 0.128 0.872 41 H 0.127 0.873 42 H 0.126 0.874 43 H 0.116 0.884 44 H 0.089 0.911 45 H 0.099 0.901 46 H 0.088 0.912 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.288 -18.700 -1.884 19.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.115 3.885 3 C 0.018 3.982 4 N -0.371 5.371 5 C -0.363 4.363 6 H 0.086 0.914 7 C -0.210 4.210 8 N -0.587 5.587 9 Si 0.737 3.263 10 H -0.213 1.213 11 H -0.218 1.218 12 H -0.214 1.214 13 N -0.362 5.362 14 C 0.307 3.693 15 O -0.413 6.413 16 C -0.175 4.175 17 C -0.134 4.134 18 C -0.739 4.739 19 S 2.604 3.396 20 C -0.808 4.808 21 O -0.932 6.932 22 O -0.937 6.937 23 C -0.160 4.160 24 C -0.222 4.222 25 C -0.212 4.212 26 H 0.092 0.908 27 H 0.093 0.907 28 H 0.071 0.929 29 H 0.043 0.957 30 H 0.056 0.944 31 H 0.216 0.784 32 H 0.063 0.937 33 H 0.230 0.770 34 H 0.108 0.892 35 H 0.118 0.882 36 H 0.109 0.891 37 H 0.104 0.896 38 H 0.150 0.850 39 H 0.153 0.847 40 H 0.147 0.853 41 H 0.146 0.854 42 H 0.145 0.855 43 H 0.134 0.866 44 H 0.108 0.892 45 H 0.118 0.882 46 H 0.107 0.893 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 6.519 -18.043 -0.580 19.193 hybrid contribution -0.865 0.463 -1.646 1.916 sum 5.654 -17.580 -2.226 18.601 Atomic orbital electron populations 1.22125 0.93686 1.01214 1.04147 1.20006 0.93374 0.92330 0.82811 1.21002 0.97889 0.88288 0.91031 1.42249 1.61299 1.10463 1.23072 1.19209 1.25041 0.87680 1.04321 0.91386 1.24659 1.00716 0.98187 0.97463 1.69635 1.39778 1.36150 1.13184 0.86283 0.77918 0.85135 0.76996 1.21316 1.21787 1.21354 1.45955 1.07052 1.59480 1.23680 1.20311 0.82408 0.78161 0.88373 1.90657 1.55750 1.51004 1.43854 1.21601 0.95757 1.02541 0.97576 1.21034 0.95904 1.03045 0.93404 1.30355 1.25177 1.10562 1.07800 1.07834 0.78506 0.75821 0.77471 1.30308 1.12294 1.13968 1.24240 1.93627 1.76097 1.37350 1.86150 1.93597 1.81821 1.64734 1.53596 1.22601 0.99808 0.97110 0.96462 1.23139 0.99508 1.03573 0.95933 1.22785 1.03661 0.91709 1.03069 0.90769 0.90681 0.92924 0.95748 0.94361 0.78447 0.93691 0.77031 0.89165 0.88191 0.89100 0.89562 0.85043 0.84688 0.85327 0.85424 0.85495 0.86644 0.89243 0.88249 0.89316 0.89507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 7.04 37.16 0.26 -1.98 16 2 C 0.20 3.25 0.54 -131.82 -0.07 3.18 16 3 C 0.15 3.10 5.02 -4.04 -0.02 3.08 16 4 N -0.73 -18.09 5.17 -59.91 -0.31 -18.40 16 5 C -0.23 -6.54 9.99 -15.06 -0.15 -6.69 16 6 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 7 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 8 N -0.94 -27.69 13.06 55.49 0.72 -26.96 16 9 Si 0.91 22.70 29.55 -169.99 -5.02 17.67 16 10 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 11 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 12 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 13 N -0.71 -10.60 4.71 -47.61 -0.22 -10.82 16 14 C 0.52 8.29 7.24 -10.99 -0.08 8.21 16 15 O -0.54 -10.33 12.80 5.55 0.07 -10.26 16 16 C -0.13 -1.56 5.70 -27.88 -0.16 -1.72 16 17 C -0.10 -1.11 4.51 -26.73 -0.12 -1.24 16 18 C -0.61 -4.33 5.81 37.16 0.22 -4.11 16 19 S 2.42 20.52 5.36 -107.50 -0.58 19.95 16 20 C -0.66 -2.85 10.62 101.05 1.07 -1.78 16 21 O -0.94 -12.44 18.10 -57.83 -1.05 -13.48 16 22 O -0.94 -11.49 18.10 -57.83 -1.05 -12.54 16 23 C -0.14 -2.10 4.05 -90.62 -0.37 -2.47 16 24 C -0.18 -2.27 9.61 -26.73 -0.26 -2.53 16 25 C -0.17 -2.16 9.81 -26.73 -0.26 -2.42 16 26 H 0.07 1.06 6.84 -51.93 -0.36 0.71 16 27 H 0.07 1.24 6.86 -51.93 -0.36 0.89 16 28 H 0.05 0.63 7.01 -51.93 -0.36 0.26 16 29 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.04 0.91 6.65 -51.93 -0.35 0.57 16 31 H 0.38 9.61 6.35 -40.82 -0.26 9.35 16 32 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 33 H 0.40 4.96 8.48 -40.82 -0.35 4.62 16 34 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.09 1.27 8.10 -51.93 -0.42 0.85 16 37 H 0.09 1.04 8.10 -51.93 -0.42 0.62 16 38 H 0.13 0.52 8.14 -51.92 -0.42 0.09 16 39 H 0.13 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.13 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.13 0.52 8.14 -51.92 -0.42 0.09 16 42 H 0.13 0.29 8.14 -51.93 -0.42 -0.14 16 43 H 0.12 2.00 7.18 -51.93 -0.37 1.63 16 44 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.10 1.16 5.87 -51.93 -0.31 0.86 16 46 H 0.09 1.02 7.42 -51.93 -0.39 0.63 16 47 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 390.03 15.07 5.88 5.88 Total: -1.00 -38.94 390.03 -9.29 -48.23 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: -7.70 Total: 11.72 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: -0.03 Total: -10.98 kcal Atomic # 7 Polarization: -56.37 SS G_CDS: 0.19 Total: -56.18 kcal Atomic # 8 Polarization: -34.26 SS G_CDS: -2.02 Total: -36.29 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.67 kcal Atomic # 16 Polarization: 20.52 SS G_CDS: -0.58 Total: 19.95 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -38.94 -9.29 -48.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714173280.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.635 kcal (2) G-P(sol) polarization free energy of solvation -38.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds