Wall clock time and date at job start Tue Mar 31 2020 16:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47076 * 2 1 4 4 N 1.46500 * 109.47030 * 300.00020 * 3 2 1 5 5 C 1.36937 * 120.00138 * 180.02562 * 4 3 2 6 6 H 1.08003 * 120.00269 * 359.97438 * 5 4 3 7 7 C 1.38808 * 120.00284 * 180.02562 * 5 4 3 8 8 N 1.31617 * 119.99832 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00092 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47180 * 59.99840 * 9 7 5 11 11 H 1.48500 * 109.46983 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47249 * 299.99263 * 9 7 5 13 13 N 1.46494 * 109.47145 * 240.00201 * 2 1 3 14 14 C 1.34772 * 120.00318 * 183.95049 * 13 2 1 15 15 O 1.21290 * 119.99870 * 5.18818 * 14 13 2 16 16 C 1.50698 * 120.00296 * 185.19000 * 14 13 2 17 17 C 1.53005 * 109.47045 * 179.97438 * 16 14 13 18 18 C 1.53002 * 109.46800 * 179.97438 * 17 16 14 19 19 S 1.81407 * 109.46706 * 180.02562 * 18 17 16 20 20 C 1.81402 * 101.91747 * 180.02562 * 19 18 17 21 21 O 1.42099 * 108.57726 * 294.48879 * 19 18 17 22 22 O 1.42092 * 108.57752 * 65.51579 * 19 18 17 23 23 C 1.52998 * 109.47194 * 119.99556 * 2 1 3 24 24 C 1.53001 * 117.51697 * 348.45352 * 23 2 1 25 25 C 1.53005 * 117.49462 * 57.08212 * 23 2 1 26 26 H 1.09003 * 109.46706 * 300.00391 * 1 2 3 27 27 H 1.09000 * 109.47099 * 59.99667 * 1 2 3 28 28 H 1.08993 * 109.46980 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47388 * 59.99734 * 3 2 1 30 30 H 1.08993 * 109.47268 * 179.97438 * 3 2 1 31 31 H 0.96996 * 120.00435 * 359.97438 * 4 3 2 32 32 H 0.97008 * 119.99757 * 180.02562 * 8 7 5 33 33 H 0.97001 * 119.99703 * 3.94030 * 13 2 1 34 34 H 1.09002 * 109.46756 * 299.99546 * 16 14 13 35 35 H 1.08998 * 109.47335 * 59.99839 * 16 14 13 36 36 H 1.08997 * 109.47243 * 300.00282 * 17 16 14 37 37 H 1.09006 * 109.46919 * 60.00182 * 17 16 14 38 38 H 1.09002 * 109.47084 * 299.99857 * 18 17 16 39 39 H 1.08998 * 109.47252 * 60.00300 * 18 17 16 40 40 H 1.08994 * 109.47285 * 59.99596 * 20 19 18 41 41 H 1.09000 * 109.46744 * 179.97438 * 20 19 18 42 42 H 1.08996 * 109.47125 * 299.99646 * 20 19 18 43 43 H 1.08999 * 115.55380 * 202.74664 * 23 2 1 44 44 H 1.09002 * 117.50163 * 214.96480 * 24 23 2 45 45 H 1.08997 * 117.50077 * 359.97438 * 24 23 2 46 46 H 1.08998 * 117.49808 * 359.97048 * 25 23 2 47 47 H 1.08998 * 117.49901 * 144.97755 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5517 2.1331 -1.1962 5 6 1.8829 3.4440 -1.4132 6 1 2.5038 3.9689 -0.7023 7 6 1.4198 4.0985 -2.5463 8 7 0.6627 3.4590 -3.4124 9 14 1.8710 5.8869 -2.8419 10 1 3.3476 6.0166 -2.9310 11 1 1.2564 6.3490 -4.1123 12 1 1.3681 6.7167 -1.7177 13 7 2.0184 -0.6905 -1.1961 14 6 3.3408 -0.8838 -1.3701 15 8 4.1197 -0.5711 -0.4945 16 6 3.8517 -1.4883 -2.6524 17 6 5.3768 -1.5971 -2.5929 18 6 5.8954 -2.2114 -3.8946 19 16 7.7035 -2.3410 -3.8236 20 6 8.0898 -3.0782 -5.4355 21 8 8.2501 -1.0300 -3.7832 22 8 8.0512 -3.2694 -2.8057 23 6 2.0401 -0.7211 1.2493 24 6 1.0223 -1.0406 2.3461 25 6 1.5801 -2.1637 1.4694 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.6767 1.9564 0.8900 30 1 3.1300 1.4425 0.0005 31 1 0.9943 1.6616 -1.8349 32 1 0.3393 3.9163 -4.2044 33 1 1.3899 -1.0088 -1.8629 34 1 3.4212 -2.4812 -2.7829 35 1 3.5655 -0.8550 -3.4921 36 1 5.8070 -0.6041 -2.4625 37 1 5.6633 -2.2303 -1.7531 38 1 5.4652 -3.2045 -4.0244 39 1 5.6089 -1.5786 -4.7345 40 1 7.7390 -2.4193 -6.2298 41 1 9.1678 -3.2122 -5.5246 42 1 7.5947 -4.0455 -5.5206 43 1 3.0518 -0.4623 1.5615 44 1 1.3644 -0.9920 3.3799 45 1 -0.0109 -0.7367 2.1780 46 1 0.9139 -2.5988 0.7245 47 1 2.2894 -2.8540 1.9261 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714173280.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:04 Heat of formation + Delta-G solvation = -103.081937 kcal Electronic energy + Delta-G solvation = -27409.985991 eV Core-core repulsion = 23527.243630 eV Total energy + Delta-G solvation = -3882.742361 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.32807 -38.98698 -37.95533 -37.00361 -36.60104 -35.51014 -34.98397 -33.08787 -31.07741 -30.40027 -28.97464 -27.73002 -25.64085 -23.90602 -23.11029 -22.86466 -21.37480 -20.05364 -19.76236 -19.21863 -18.26923 -17.34462 -17.31579 -17.15956 -16.81706 -16.72045 -16.42669 -16.25313 -15.48686 -15.22822 -14.95607 -14.89993 -14.45705 -14.14900 -13.87018 -13.79806 -13.68980 -13.40514 -13.19054 -13.15941 -13.02215 -12.98169 -12.94679 -12.87344 -12.77499 -12.42252 -12.19135 -12.09523 -11.98616 -11.92412 -11.87122 -11.72176 -11.40463 -11.27593 -11.02678 -10.96171 -10.40477 -9.85709 -8.96240 -7.95810 -5.21825 -0.87773 1.45194 1.47420 1.53446 1.84660 1.95494 2.28213 2.55066 2.81255 3.09633 3.17311 3.37097 3.55027 3.66226 3.87296 3.95119 3.96042 4.05306 4.15088 4.18940 4.23963 4.27365 4.32774 4.36029 4.47535 4.55189 4.67212 4.75017 4.78895 4.89630 4.94968 4.98926 5.01444 5.01710 5.04218 5.14823 5.17383 5.30520 5.32030 5.43927 5.47010 5.75548 6.27320 6.77427 7.35214 7.49230 8.07808 8.39002 9.26583 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.008591 B = 0.003688 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3258.582172 B = 7590.045783 C =10120.691333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.209 3.791 3 C 0.149 3.851 4 N -0.727 5.727 5 C -0.250 4.250 6 H 0.059 0.941 7 C -0.062 4.062 8 N -0.959 5.959 9 Si 0.965 3.035 10 H -0.287 1.287 11 H -0.287 1.287 12 H -0.280 1.280 13 N -0.705 5.705 14 C 0.506 3.494 15 O -0.579 6.579 16 C -0.127 4.127 17 C -0.104 4.104 18 C -0.595 4.595 19 S 2.410 3.590 20 C -0.629 4.629 21 O -1.000 7.000 22 O -0.990 6.990 23 C -0.166 4.166 24 C -0.171 4.171 25 C -0.154 4.154 26 H 0.075 0.925 27 H 0.053 0.947 28 H 0.088 0.912 29 H 0.016 0.984 30 H 0.005 0.995 31 H 0.380 0.620 32 H 0.253 0.747 33 H 0.410 0.590 34 H 0.136 0.864 35 H 0.106 0.894 36 H 0.051 0.949 37 H 0.073 0.927 38 H 0.177 0.823 39 H 0.161 0.839 40 H 0.153 0.847 41 H 0.134 0.866 42 H 0.160 0.840 43 H 0.081 0.919 44 H 0.098 0.902 45 H 0.112 0.888 46 H 0.106 0.894 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.704 -20.987 -3.747 21.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.123 3.877 3 C 0.021 3.979 4 N -0.371 5.371 5 C -0.382 4.382 6 H 0.077 0.923 7 C -0.255 4.255 8 N -0.609 5.609 9 Si 0.794 3.206 10 H -0.213 1.213 11 H -0.213 1.213 12 H -0.207 1.207 13 N -0.356 5.356 14 C 0.294 3.706 15 O -0.459 6.459 16 C -0.167 4.167 17 C -0.143 4.143 18 C -0.725 4.725 19 S 2.600 3.400 20 C -0.783 4.783 21 O -0.997 6.997 22 O -0.987 6.987 23 C -0.186 4.186 24 C -0.208 4.208 25 C -0.192 4.192 26 H 0.094 0.906 27 H 0.072 0.928 28 H 0.106 0.894 29 H 0.034 0.966 30 H 0.023 0.977 31 H 0.214 0.786 32 H 0.062 0.938 33 H 0.246 0.754 34 H 0.154 0.846 35 H 0.124 0.876 36 H 0.070 0.930 37 H 0.092 0.908 38 H 0.194 0.806 39 H 0.179 0.821 40 H 0.171 0.829 41 H 0.152 0.848 42 H 0.178 0.822 43 H 0.100 0.900 44 H 0.116 0.884 45 H 0.131 0.869 46 H 0.125 0.875 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.929 -20.329 -2.397 21.054 hybrid contribution -0.344 1.154 -1.072 1.612 sum 4.584 -19.174 -3.468 20.017 Atomic orbital electron populations 1.22053 0.91808 1.03192 1.03167 1.19768 0.94484 0.89265 0.84197 1.21002 0.95840 0.91743 0.89269 1.42269 1.61104 1.09668 1.24033 1.19475 1.24988 0.89265 1.04444 0.92315 1.25344 1.00975 1.01867 0.97311 1.69748 1.40431 1.37379 1.13363 0.85350 0.77415 0.80822 0.76986 1.21339 1.21308 1.20654 1.45930 1.07259 1.58790 1.23662 1.21212 0.82324 0.77640 0.89402 1.90647 1.56809 1.52763 1.45706 1.21667 0.95431 1.04656 0.94954 1.21005 0.96264 1.01216 0.95858 1.30215 1.23152 1.13250 1.05878 1.07685 0.79017 0.74304 0.79044 1.30031 1.13303 1.15419 1.19516 1.93549 1.77775 1.40589 1.87814 1.93531 1.82904 1.65081 1.57228 1.22310 0.99091 0.99901 0.97260 1.23253 0.99252 1.02555 0.95719 1.22862 1.03194 0.90257 1.02839 0.90590 0.92793 0.89351 0.96569 0.97739 0.78602 0.93850 0.75416 0.84633 0.87576 0.92999 0.90802 0.80564 0.82142 0.82879 0.84762 0.82173 0.90036 0.88396 0.86942 0.87533 0.89037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.99 7.04 71.98 0.51 -3.48 16 2 C 0.21 6.81 0.54 3.61 0.00 6.82 16 3 C 0.15 6.64 5.02 86.38 0.43 7.07 16 4 N -0.73 -37.26 5.17 -343.46 -1.78 -39.03 16 5 C -0.25 -14.49 9.99 84.03 0.84 -13.65 16 6 H 0.06 3.44 7.83 -2.91 -0.02 3.41 16 7 C -0.06 -3.57 5.50 84.86 0.47 -3.10 16 8 N -0.96 -56.67 13.06 21.65 0.28 -56.39 16 9 Si 0.96 46.95 29.55 68.60 2.03 48.98 16 10 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 11 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 12 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 13 N -0.71 -20.71 4.71 -422.93 -1.99 -22.70 16 14 C 0.51 16.36 7.24 87.66 0.63 17.00 16 15 O -0.58 -23.87 12.80 -3.06 -0.04 -23.91 16 16 C -0.13 -2.79 5.70 29.85 0.17 -2.62 16 17 C -0.10 -2.49 4.51 30.60 0.14 -2.35 16 18 C -0.59 -7.16 5.81 71.98 0.42 -6.75 16 19 S 2.41 40.47 5.36 -56.49 -0.30 40.17 16 20 C -0.63 -3.16 10.62 113.37 1.20 -1.96 16 21 O -1.00 -28.54 18.10 -127.37 -2.30 -30.84 16 22 O -0.99 -25.10 18.10 -127.37 -2.30 -27.40 16 23 C -0.17 -4.98 4.05 -10.79 -0.04 -5.02 16 24 C -0.17 -3.90 9.61 30.60 0.29 -3.60 16 25 C -0.15 -3.47 9.81 30.60 0.30 -3.17 16 26 H 0.08 2.06 6.84 -2.39 -0.02 2.04 16 27 H 0.05 1.73 6.86 -2.39 -0.02 1.72 16 28 H 0.09 1.80 7.01 -2.39 -0.02 1.78 16 29 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.00 0.24 6.65 -2.39 -0.02 0.22 16 31 H 0.38 19.46 6.35 -92.71 -0.59 18.87 16 32 H 0.25 14.47 8.31 -92.70 -0.77 13.70 16 33 H 0.41 9.56 8.48 -92.71 -0.79 8.77 16 34 H 0.14 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.05 1.61 8.10 -2.39 -0.02 1.59 16 37 H 0.07 1.90 8.10 -2.38 -0.02 1.88 16 38 H 0.18 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.16 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.15 0.16 8.14 -2.39 -0.02 0.14 16 41 H 0.13 0.67 8.14 -2.39 -0.02 0.66 16 42 H 0.16 -0.14 8.14 -2.39 -0.02 -0.16 16 43 H 0.08 3.02 7.18 -2.39 -0.02 3.00 16 44 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 45 H 0.11 2.30 5.87 -2.39 -0.01 2.29 16 46 H 0.11 2.03 7.42 -2.39 -0.02 2.01 16 47 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -90.90 390.03 -1.44 -92.34 By element: Atomic # 1 Polarization: 33.99 SS G_CDS: -0.39 Total: 33.60 kcal Atomic # 6 Polarization: -20.17 SS G_CDS: 5.36 Total: -14.81 kcal Atomic # 7 Polarization: -114.64 SS G_CDS: -3.49 Total: -118.12 kcal Atomic # 8 Polarization: -77.51 SS G_CDS: -4.65 Total: -82.16 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 2.03 Total: 48.98 kcal Atomic # 16 Polarization: 40.47 SS G_CDS: -0.30 Total: 40.17 kcal Total: -90.90 -1.44 -92.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714173280.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.745 kcal (2) G-P(sol) polarization free energy of solvation -90.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds