Wall clock time and date at job start Tue Mar 31 2020 16:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46940 * 2 1 4 4 N 1.46498 * 109.46924 * 179.97438 * 3 2 1 5 5 C 1.36939 * 120.00286 * 264.11640 * 4 3 2 6 6 H 1.08000 * 120.00246 * 188.01955 * 5 4 3 7 7 C 1.38815 * 119.99597 * 8.01360 * 5 4 3 8 8 N 1.31618 * 120.00098 * 25.65074 * 7 5 4 9 9 Si 1.86803 * 119.99700 * 205.64543 * 7 5 4 10 10 H 1.48498 * 109.46911 * 84.99179 * 9 7 5 11 11 H 1.48500 * 109.46886 * 204.99349 * 9 7 5 12 12 H 1.48496 * 109.47035 * 324.98931 * 9 7 5 13 13 C 1.46498 * 120.00059 * 84.12086 * 4 3 2 14 14 C 1.53007 * 109.46723 * 270.00130 * 13 4 3 15 15 N 1.46507 * 109.46790 * 180.02562 * 14 13 4 16 16 C 1.34774 * 119.99769 * 180.27593 * 15 14 13 17 17 O 1.21568 * 119.99872 * 359.71419 * 16 15 14 18 18 C 1.47709 * 120.00030 * 179.72632 * 16 15 14 19 19 C 1.40017 * 120.50012 * 359.71016 * 18 16 15 20 20 N 1.31467 * 121.52133 * 179.79572 * 19 18 16 21 21 C 1.32332 * 121.77880 * 0.44939 * 20 19 18 22 22 O 1.34451 * 134.99126 * 179.80190 * 21 20 19 23 23 N 1.20857 * 113.07342 * 180.02562 * 22 21 20 24 24 C 1.29993 * 113.53222 * 359.97438 * 23 22 21 25 25 C 1.50707 * 127.40441 * 179.97438 * 24 23 22 26 26 C 1.41230 * 119.93839 * 359.82515 * 21 20 19 27 27 C 1.38659 * 120.05021 * 359.94703 * 26 21 20 28 28 H 1.09003 * 109.47065 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.47347 * 300.00300 * 1 2 3 30 30 H 1.09008 * 109.46665 * 59.99905 * 1 2 3 31 31 H 1.09000 * 109.47118 * 240.00511 * 2 1 3 32 32 H 1.08999 * 109.47229 * 120.00035 * 2 1 3 33 33 H 1.08999 * 109.46709 * 59.99769 * 3 2 1 34 34 H 1.08999 * 109.47187 * 300.00060 * 3 2 1 35 35 H 0.96997 * 119.99765 * 179.97438 * 8 7 5 36 36 H 1.08992 * 109.47625 * 149.99840 * 13 4 3 37 37 H 1.09003 * 109.47124 * 29.99352 * 13 4 3 38 38 H 1.08989 * 109.47627 * 59.99935 * 14 13 4 39 39 H 1.09000 * 109.47005 * 299.99068 * 14 13 4 40 40 H 0.96997 * 119.99821 * 359.97438 * 15 14 13 41 41 H 1.07995 * 119.24077 * 0.02562 * 19 18 16 42 42 H 1.09007 * 109.46856 * 270.01020 * 25 24 23 43 43 H 1.09003 * 109.46841 * 29.99935 * 25 24 23 44 44 H 1.08987 * 109.47173 * 150.00297 * 25 24 23 45 45 H 1.08004 * 121.14159 * 180.02562 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1892 1.5643 1.1805 6 1 5.2613 1.6946 1.1721 7 6 3.5048 1.5204 2.3874 8 7 2.3546 0.8858 2.4690 9 14 4.2164 2.3619 3.8958 10 1 3.8295 3.7956 3.8914 11 1 3.6884 1.7103 5.1213 12 1 5.6968 2.2485 3.8736 13 6 4.2380 1.3124 -1.2611 14 6 4.4931 -0.1679 -1.5523 15 7 5.2267 -0.2980 -2.8138 16 6 5.5590 -1.5192 -3.2771 17 8 5.2546 -2.5124 -2.6457 18 6 6.2933 -1.6508 -4.5519 19 6 6.6441 -0.5142 -5.2906 20 7 7.3010 -0.6077 -6.4255 21 6 7.6557 -1.7781 -6.9310 22 8 8.3087 -2.1776 -8.0363 23 7 8.4199 -3.3786 -8.1127 24 6 7.8857 -4.0140 -7.1124 25 6 7.8434 -5.5042 -6.8919 26 6 7.3318 -2.9694 -6.2452 27 6 6.6436 -2.9132 -5.0427 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6767 1.9564 -0.8900 35 1 1.8766 0.8548 3.3124 36 1 5.1903 1.8369 -1.1838 37 1 3.6492 1.7455 -2.0697 38 1 3.5408 -0.6923 -1.6296 39 1 5.0819 -0.6010 -0.7437 40 1 5.4694 0.4945 -3.3176 41 1 6.3720 0.4621 -4.9175 42 1 6.9412 -5.9134 -7.3469 43 1 8.7205 -5.9639 -7.3474 44 1 7.8378 -5.7132 -5.8222 45 1 6.3872 -3.8131 -4.5033 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714657362.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:09 Heat of formation + Delta-G solvation = 83.488232 kcal Electronic energy + Delta-G solvation = -27615.664796 eV Core-core repulsion = 23637.861524 eV Total energy + Delta-G solvation = -3977.803272 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -45.13484 -40.57663 -38.87648 -36.64687 -35.34777 -34.60945 -32.73014 -32.03403 -31.87017 -31.20418 -29.26935 -28.10423 -25.76750 -25.54448 -24.60234 -23.39389 -21.72876 -21.10218 -20.92476 -19.97535 -18.71273 -18.41353 -18.23498 -17.18303 -16.89601 -16.25535 -15.41793 -15.30709 -14.92010 -14.31415 -14.18089 -14.03363 -13.94031 -13.74541 -13.67223 -13.58040 -13.46504 -13.29218 -12.96145 -12.73119 -12.43300 -11.95397 -11.64399 -11.38635 -11.33429 -11.10811 -10.90542 -10.66339 -10.46612 -10.39240 -10.02048 -9.96078 -9.88517 -9.76854 -9.71965 -9.56294 -9.28108 -8.77696 -8.38973 -6.99209 -5.82982 -3.14801 0.09299 0.11298 1.63019 1.83030 2.54874 3.04551 3.36957 3.37283 3.38742 3.45043 3.45559 3.60991 3.92370 4.17296 4.29194 4.44860 4.55397 4.57569 4.96988 4.98635 5.07548 5.24090 5.26931 5.42649 5.47221 5.52790 5.68272 5.75049 5.83261 6.13368 6.18047 6.24194 6.46099 6.53634 6.59442 6.64458 6.77323 6.94850 6.97818 7.15005 7.23257 7.53358 7.62751 7.74146 7.74880 8.06435 8.18639 8.29522 9.16964 9.78556 10.22360 11.20291 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020273 B = 0.002211 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.809223 B =12659.423116 C =13002.960973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.131 4.131 3 C 0.170 3.830 4 N -0.590 5.590 5 C -0.258 4.258 6 H 0.075 0.925 7 C 0.002 3.998 8 N -0.890 5.890 9 Si 0.897 3.103 10 H -0.288 1.288 11 H -0.293 1.293 12 H -0.282 1.282 13 C 0.142 3.858 14 C 0.088 3.912 15 N -0.714 5.714 16 C 0.560 3.440 17 O -0.531 6.531 18 C -0.196 4.196 19 C 0.194 3.806 20 N -0.461 5.461 21 C 0.228 3.772 22 O 0.084 5.916 23 N -0.317 5.317 24 C 0.072 3.928 25 C -0.079 4.079 26 C -0.228 4.228 27 C 0.064 3.936 28 H 0.033 0.967 29 H 0.051 0.949 30 H 0.030 0.970 31 H 0.021 0.979 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.004 0.996 35 H 0.253 0.747 36 H 0.051 0.949 37 H 0.044 0.956 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.395 0.605 41 H 0.182 0.818 42 H 0.090 0.910 43 H 0.086 0.914 44 H 0.090 0.910 45 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.993 -6.843 -17.448 20.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.170 4.170 3 C 0.045 3.955 4 N -0.310 5.310 5 C -0.387 4.387 6 H 0.093 0.907 7 C -0.196 4.196 8 N -0.534 5.534 9 Si 0.727 3.273 10 H -0.216 1.216 11 H -0.220 1.220 12 H -0.208 1.208 13 C 0.013 3.987 14 C -0.037 4.037 15 N -0.366 5.366 16 C 0.344 3.656 17 O -0.409 6.409 18 C -0.202 4.202 19 C 0.029 3.971 20 N -0.178 5.178 21 C 0.046 3.954 22 O 0.027 5.973 23 N -0.025 5.025 24 C -0.098 4.098 25 C -0.136 4.136 26 C -0.233 4.233 27 C 0.035 3.965 28 H 0.052 0.948 29 H 0.070 0.930 30 H 0.049 0.951 31 H 0.039 0.961 32 H 0.117 0.883 33 H 0.108 0.892 34 H 0.022 0.978 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.229 0.771 41 H 0.199 0.801 42 H 0.109 0.891 43 H 0.104 0.896 44 H 0.108 0.892 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 7.564 -7.120 -18.422 21.149 hybrid contribution -0.138 0.027 1.628 1.635 sum 7.426 -7.093 -16.794 19.685 Atomic orbital electron populations 1.21629 0.98550 0.99336 1.00034 1.22227 0.92948 1.00467 1.01352 1.20944 0.81485 0.94540 0.98501 1.44243 1.01922 1.83488 1.01376 1.19259 0.92262 1.43695 0.83440 0.90717 1.24730 0.97556 0.99995 0.97330 1.70157 1.17165 1.41050 1.25060 0.86376 0.78423 0.79908 0.82568 1.21556 1.21966 1.20758 1.20974 0.96540 0.91511 0.89653 1.22889 0.95946 1.02099 0.82758 1.46147 1.57729 1.06967 1.25709 1.17745 0.79554 0.84351 0.83951 1.90821 1.54514 1.37033 1.58495 1.21139 1.05620 0.94502 0.98943 1.23150 0.88468 0.98891 0.86616 1.66418 1.14110 1.24020 1.13232 1.21767 0.94151 0.90813 0.88655 1.84906 1.59976 1.16835 1.35561 1.73500 1.18722 0.89006 1.21305 1.24337 0.97005 0.98299 0.90159 1.20306 1.04340 0.84754 1.04194 1.20899 1.08057 0.94530 0.99832 1.20973 0.87060 0.98584 0.89850 0.94807 0.92968 0.95073 0.96056 0.88341 0.89170 0.97788 0.93664 0.93038 0.93747 0.91192 0.91086 0.77107 0.80150 0.89116 0.89560 0.89160 0.82091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 9.91 37.16 0.37 -2.20 16 2 C -0.13 -2.82 5.60 -26.73 -0.15 -2.97 16 3 C 0.17 3.82 4.92 -4.04 -0.02 3.80 16 4 N -0.59 -13.37 2.54 -173.24 -0.44 -13.81 16 5 C -0.26 -6.52 9.70 -15.06 -0.15 -6.67 16 6 H 0.07 1.87 7.94 -52.49 -0.42 1.45 16 7 C 0.00 0.05 4.89 -17.43 -0.09 -0.04 16 8 N -0.89 -23.58 8.62 55.49 0.48 -23.11 16 9 Si 0.90 20.76 29.62 -169.99 -5.04 15.73 16 10 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 13 C 0.14 2.51 5.82 -4.04 -0.02 2.49 16 14 C 0.09 1.51 5.88 -4.03 -0.02 1.49 16 15 N -0.71 -9.20 5.51 -61.29 -0.34 -9.54 16 16 C 0.56 7.73 7.78 -12.39 -0.10 7.64 16 17 O -0.53 -9.50 16.42 5.31 0.09 -9.41 16 18 C -0.20 -2.13 5.90 -104.74 -0.62 -2.75 16 19 C 0.19 1.82 10.68 -17.04 -0.18 1.64 16 20 N -0.46 -5.16 10.36 -12.61 -0.13 -5.29 16 21 C 0.23 2.64 8.75 -16.20 -0.14 2.50 16 22 O 0.08 0.99 11.11 16.09 0.18 1.17 16 23 N -0.32 -3.49 11.94 34.92 0.42 -3.07 16 24 C 0.07 0.66 7.59 -79.98 -0.61 0.05 16 25 C -0.08 -0.42 10.50 36.01 0.38 -0.04 16 26 C -0.23 -2.36 6.55 -105.22 -0.69 -3.05 16 27 C 0.06 0.65 9.75 -38.80 -0.38 0.28 16 28 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.03 0.52 8.14 -51.92 -0.42 0.10 16 31 H 0.02 0.44 5.98 -51.93 -0.31 0.13 16 32 H 0.10 2.49 6.33 -51.93 -0.33 2.16 16 33 H 0.09 2.28 5.85 -51.93 -0.30 1.97 16 34 H 0.00 0.08 7.98 -51.93 -0.41 -0.33 16 35 H 0.25 6.62 8.31 -40.82 -0.34 6.28 16 36 H 0.05 0.86 8.03 -51.93 -0.42 0.44 16 37 H 0.04 0.70 7.95 -51.93 -0.41 0.28 16 38 H 0.07 1.35 5.92 -51.94 -0.31 1.04 16 39 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 40 H 0.39 3.61 6.52 -40.82 -0.27 3.34 16 41 H 0.18 1.08 6.39 -52.49 -0.34 0.74 16 42 H 0.09 0.38 8.14 -51.92 -0.42 -0.05 16 43 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.09 0.37 8.14 -51.94 -0.42 -0.05 16 45 H 0.16 1.47 7.74 -52.48 -0.41 1.06 16 LS Contribution 373.58 15.07 5.63 5.63 Total: -1.00 -30.59 373.58 -7.58 -38.17 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -6.01 Total: 1.37 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: -2.41 Total: 2.16 kcal Atomic # 7 Polarization: -54.81 SS G_CDS: -0.01 Total: -54.82 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: 0.27 Total: -8.24 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.04 Total: 15.73 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.59 -7.58 -38.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714657362.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.660 kcal (2) G-P(sol) polarization free energy of solvation -30.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds