Wall clock time and date at job start Tue Mar 31 2020 16:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46940 * 2 1 4 4 N 1.46498 * 109.46924 * 179.97438 * 3 2 1 5 5 C 1.36939 * 120.00286 * 264.11640 * 4 3 2 6 6 H 1.08000 * 120.00246 * 188.01955 * 5 4 3 7 7 C 1.38815 * 119.99597 * 8.01360 * 5 4 3 8 8 N 1.31618 * 120.00098 * 25.65074 * 7 5 4 9 9 Si 1.86803 * 119.99700 * 205.64543 * 7 5 4 10 10 H 1.48498 * 109.46911 * 84.99179 * 9 7 5 11 11 H 1.48500 * 109.46886 * 204.99349 * 9 7 5 12 12 H 1.48496 * 109.47035 * 324.98931 * 9 7 5 13 13 C 1.46498 * 120.00059 * 84.12086 * 4 3 2 14 14 C 1.53007 * 109.46723 * 270.00130 * 13 4 3 15 15 N 1.46507 * 109.46790 * 180.02562 * 14 13 4 16 16 C 1.34774 * 119.99769 * 180.27593 * 15 14 13 17 17 O 1.21568 * 119.99872 * 359.71419 * 16 15 14 18 18 C 1.47709 * 120.00030 * 179.72632 * 16 15 14 19 19 C 1.40017 * 120.50012 * 359.71016 * 18 16 15 20 20 N 1.31467 * 121.52133 * 179.79572 * 19 18 16 21 21 C 1.32332 * 121.77880 * 0.44939 * 20 19 18 22 22 O 1.34451 * 134.99126 * 179.80190 * 21 20 19 23 23 N 1.20857 * 113.07342 * 180.02562 * 22 21 20 24 24 C 1.29993 * 113.53222 * 359.97438 * 23 22 21 25 25 C 1.50707 * 127.40441 * 179.97438 * 24 23 22 26 26 C 1.41230 * 119.93839 * 359.82515 * 21 20 19 27 27 C 1.38659 * 120.05021 * 359.94703 * 26 21 20 28 28 H 1.09003 * 109.47065 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.47347 * 300.00300 * 1 2 3 30 30 H 1.09008 * 109.46665 * 59.99905 * 1 2 3 31 31 H 1.09000 * 109.47118 * 240.00511 * 2 1 3 32 32 H 1.08999 * 109.47229 * 120.00035 * 2 1 3 33 33 H 1.08999 * 109.46709 * 59.99769 * 3 2 1 34 34 H 1.08999 * 109.47187 * 300.00060 * 3 2 1 35 35 H 0.96997 * 119.99765 * 179.97438 * 8 7 5 36 36 H 1.08992 * 109.47625 * 149.99840 * 13 4 3 37 37 H 1.09003 * 109.47124 * 29.99352 * 13 4 3 38 38 H 1.08989 * 109.47627 * 59.99935 * 14 13 4 39 39 H 1.09000 * 109.47005 * 299.99068 * 14 13 4 40 40 H 0.96997 * 119.99821 * 359.97438 * 15 14 13 41 41 H 1.07995 * 119.24077 * 0.02562 * 19 18 16 42 42 H 1.09007 * 109.46856 * 270.01020 * 25 24 23 43 43 H 1.09003 * 109.46841 * 29.99935 * 25 24 23 44 44 H 1.08987 * 109.47173 * 150.00297 * 25 24 23 45 45 H 1.08004 * 121.14159 * 180.02562 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1892 1.5643 1.1805 6 1 5.2613 1.6946 1.1721 7 6 3.5048 1.5204 2.3874 8 7 2.3546 0.8858 2.4690 9 14 4.2164 2.3619 3.8958 10 1 3.8295 3.7956 3.8914 11 1 3.6884 1.7103 5.1213 12 1 5.6968 2.2485 3.8736 13 6 4.2380 1.3124 -1.2611 14 6 4.4931 -0.1679 -1.5523 15 7 5.2267 -0.2980 -2.8138 16 6 5.5590 -1.5192 -3.2771 17 8 5.2546 -2.5124 -2.6457 18 6 6.2933 -1.6508 -4.5519 19 6 6.6441 -0.5142 -5.2906 20 7 7.3010 -0.6077 -6.4255 21 6 7.6557 -1.7781 -6.9310 22 8 8.3087 -2.1776 -8.0363 23 7 8.4199 -3.3786 -8.1127 24 6 7.8857 -4.0140 -7.1124 25 6 7.8434 -5.5042 -6.8919 26 6 7.3318 -2.9694 -6.2452 27 6 6.6436 -2.9132 -5.0427 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6767 1.9564 -0.8900 35 1 1.8766 0.8548 3.3124 36 1 5.1903 1.8369 -1.1838 37 1 3.6492 1.7455 -2.0697 38 1 3.5408 -0.6923 -1.6296 39 1 5.0819 -0.6010 -0.7437 40 1 5.4694 0.4945 -3.3176 41 1 6.3720 0.4621 -4.9175 42 1 6.9412 -5.9134 -7.3469 43 1 8.7205 -5.9639 -7.3474 44 1 7.8378 -5.7132 -5.8222 45 1 6.3872 -3.8131 -4.5033 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714657362.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:08 Heat of formation + Delta-G solvation = 63.150731 kcal Electronic energy + Delta-G solvation = -27616.546696 eV Core-core repulsion = 23637.861524 eV Total energy + Delta-G solvation = -3978.685172 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -45.91463 -41.53835 -39.93489 -38.29594 -36.15899 -35.88797 -33.71765 -33.67798 -33.16082 -32.41368 -29.97743 -29.41052 -27.32756 -26.74425 -25.45826 -24.87584 -22.66088 -22.40350 -22.15713 -21.64976 -19.68403 -19.28638 -19.03754 -18.68897 -18.01505 -17.27736 -16.82234 -16.59149 -16.41755 -15.67728 -15.44443 -15.12486 -15.02402 -14.78982 -14.60942 -14.47876 -14.36780 -14.26808 -14.17812 -14.02330 -13.76626 -13.38825 -12.99628 -12.77808 -12.65910 -12.61744 -12.37000 -12.15582 -12.06596 -11.79133 -11.66459 -11.54626 -11.41644 -11.05987 -10.77537 -10.60522 -10.41471 -10.28746 -10.02655 -8.82029 -7.76567 -5.08229 -0.75595 -0.67208 0.88753 1.03481 1.51466 1.55208 1.56236 1.60317 1.95672 2.44079 2.58801 2.66836 2.86294 3.14183 3.32074 3.43047 3.49745 3.58360 3.84407 3.84935 4.26321 4.29590 4.38082 4.45446 4.56884 4.62882 4.65958 4.69081 4.72550 4.75721 4.89314 4.91566 5.00784 5.11723 5.11842 5.16191 5.29025 5.45025 5.49679 5.56648 5.69723 5.92198 6.17673 6.24150 6.40252 6.47437 6.95351 7.12250 7.26081 7.96767 8.35134 9.24211 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020273 B = 0.002211 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.809223 B =12659.423116 C =13002.960973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.121 4.121 3 C 0.174 3.826 4 N -0.607 5.607 5 C -0.260 4.260 6 H 0.075 0.925 7 C -0.047 4.047 8 N -0.908 5.908 9 Si 0.950 3.050 10 H -0.289 1.289 11 H -0.303 1.303 12 H -0.277 1.277 13 C 0.142 3.858 14 C 0.110 3.890 15 N -0.700 5.700 16 C 0.565 3.435 17 O -0.576 6.576 18 C -0.204 4.204 19 C 0.210 3.790 20 N -0.477 5.477 21 C 0.217 3.783 22 O 0.066 5.934 23 N -0.339 5.339 24 C 0.086 3.914 25 C -0.081 4.081 26 C -0.236 4.236 27 C 0.072 3.928 28 H 0.044 0.956 29 H 0.039 0.961 30 H 0.054 0.946 31 H 0.026 0.974 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.027 0.973 35 H 0.245 0.755 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.049 0.951 39 H 0.035 0.965 40 H 0.416 0.584 41 H 0.216 0.784 42 H 0.107 0.893 43 H 0.097 0.903 44 H 0.105 0.895 45 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.412 -6.631 -19.076 21.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.160 4.160 3 C 0.048 3.952 4 N -0.327 5.327 5 C -0.390 4.390 6 H 0.093 0.907 7 C -0.243 4.243 8 N -0.554 5.554 9 Si 0.781 3.219 10 H -0.217 1.217 11 H -0.230 1.230 12 H -0.203 1.203 13 C 0.015 3.985 14 C -0.016 4.016 15 N -0.352 5.352 16 C 0.352 3.648 17 O -0.456 6.456 18 C -0.209 4.209 19 C 0.044 3.956 20 N -0.194 5.194 21 C 0.036 3.964 22 O 0.013 5.987 23 N -0.051 5.051 24 C -0.084 4.084 25 C -0.138 4.138 26 C -0.241 4.241 27 C 0.044 3.956 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.044 0.956 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.045 0.955 35 H 0.054 0.946 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.067 0.933 39 H 0.054 0.946 40 H 0.254 0.746 41 H 0.232 0.768 42 H 0.125 0.875 43 H 0.115 0.885 44 H 0.123 0.877 45 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 8.019 -6.857 -20.110 22.709 hybrid contribution -0.223 -0.090 2.052 2.066 sum 7.796 -6.947 -18.057 20.859 Atomic orbital electron populations 1.21537 0.96337 1.00302 1.00573 1.22020 0.94899 0.99620 0.99478 1.20821 0.81681 0.94697 0.97962 1.44408 1.02288 1.83809 1.02242 1.19488 0.92402 1.42519 0.84594 0.90748 1.25319 0.98368 1.01086 0.99485 1.70324 1.18131 1.42137 1.24825 0.85534 0.77896 0.78680 0.79821 1.21655 1.23050 1.20252 1.21132 0.97257 0.91670 0.88444 1.22269 0.94710 1.01160 0.83503 1.45799 1.57035 1.07931 1.24451 1.18030 0.78799 0.83659 0.84339 1.90808 1.56325 1.38496 1.59996 1.20844 1.06627 0.95505 0.97971 1.23629 0.86722 0.99717 0.85496 1.66515 1.14973 1.23993 1.13893 1.22063 0.94037 0.91511 0.88824 1.84885 1.60487 1.17386 1.35898 1.73514 1.20318 0.88831 1.22388 1.24968 0.94898 0.99722 0.88804 1.20553 1.05625 0.82120 1.05506 1.21000 1.08490 0.94688 0.99946 1.21109 0.86081 0.98892 0.89568 0.93664 0.94160 0.92700 0.95573 0.92432 0.92299 0.95451 0.94560 0.91602 0.90771 0.93264 0.94611 0.74552 0.76795 0.87472 0.88450 0.87676 0.81168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.70 9.91 71.98 0.71 -3.99 16 2 C -0.12 -5.20 5.60 30.60 0.17 -5.03 16 3 C 0.17 7.68 4.92 86.38 0.43 8.10 16 4 N -0.61 -27.07 2.54 -702.00 -1.78 -28.85 16 5 C -0.26 -13.16 9.70 84.03 0.81 -12.34 16 6 H 0.07 3.69 7.94 -2.91 -0.02 3.66 16 7 C -0.05 -2.46 4.89 84.86 0.41 -2.04 16 8 N -0.91 -49.39 8.62 21.65 0.19 -49.20 16 9 Si 0.95 43.26 29.62 68.60 2.03 45.29 16 10 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 11 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 12 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 13 C 0.14 4.73 5.82 86.38 0.50 5.23 16 14 C 0.11 3.68 5.88 86.38 0.51 4.19 16 15 N -0.70 -16.57 5.51 -466.09 -2.57 -19.14 16 16 C 0.57 14.83 7.78 86.75 0.67 15.50 16 17 O -0.58 -20.42 16.42 -3.93 -0.06 -20.48 16 18 C -0.20 -4.03 5.90 -19.94 -0.12 -4.15 16 19 C 0.21 3.39 10.68 85.18 0.91 4.30 16 20 N -0.48 -9.83 10.36 -307.29 -3.18 -13.01 16 21 C 0.22 4.81 8.75 85.35 0.75 5.55 16 22 O 0.07 1.52 11.11 67.76 0.75 2.27 16 23 N -0.34 -7.17 11.94 -43.54 -0.52 -7.69 16 24 C 0.09 1.45 7.59 45.02 0.34 1.79 16 25 C -0.08 -0.67 10.50 71.24 0.75 0.08 16 26 C -0.24 -4.55 6.55 -20.25 -0.13 -4.69 16 27 C 0.07 1.36 9.75 22.77 0.22 1.58 16 28 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 31 H 0.03 1.07 5.98 -2.39 -0.01 1.06 16 32 H 0.06 2.98 6.33 -2.39 -0.02 2.97 16 33 H 0.06 3.00 5.85 -2.39 -0.01 2.98 16 34 H 0.03 1.07 7.98 -2.39 -0.02 1.05 16 35 H 0.24 13.23 8.31 -92.71 -0.77 12.46 16 36 H 0.07 2.02 8.03 -2.39 -0.02 2.00 16 37 H 0.07 2.06 7.95 -2.39 -0.02 2.04 16 38 H 0.05 1.87 5.92 -2.39 -0.01 1.86 16 39 H 0.04 1.45 8.14 -2.39 -0.02 1.44 16 40 H 0.42 6.18 6.52 -92.71 -0.60 5.58 16 41 H 0.22 1.73 6.39 -2.91 -0.02 1.71 16 42 H 0.11 0.60 8.14 -2.38 -0.02 0.58 16 43 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 44 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 45 H 0.17 2.85 7.74 -2.91 -0.02 2.83 16 Total: -1.00 -68.25 373.58 2.23 -66.02 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: 0.43 Total: 10.71 kcal Atomic # 6 Polarization: 7.15 SS G_CDS: 6.94 Total: 14.09 kcal Atomic # 7 Polarization: -110.03 SS G_CDS: -7.87 Total: -117.89 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: 0.69 Total: -18.21 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -68.25 2.23 -66.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714657362.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.166 kcal (2) G-P(sol) polarization free energy of solvation -68.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds