Wall clock time and date at job start Tue Mar 31 2020 16:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.46841 * 2 1 4 4 N 1.46500 * 109.47075 * 119.99535 * 2 1 3 5 5 C 1.36937 * 119.99961 * 118.26949 * 4 2 1 6 6 H 1.07999 * 120.00396 * 150.53462 * 5 4 2 7 7 C 1.38820 * 119.99884 * 330.53117 * 5 4 2 8 8 N 1.31619 * 119.99532 * 341.58156 * 7 5 4 9 9 Si 1.86796 * 120.00231 * 161.58100 * 7 5 4 10 10 H 1.48506 * 109.46890 * 59.99910 * 9 7 5 11 11 H 1.48501 * 109.47030 * 180.02562 * 9 7 5 12 12 H 1.48493 * 109.47058 * 300.00192 * 9 7 5 13 13 C 1.46505 * 120.00161 * 298.26372 * 4 2 1 14 14 C 1.52999 * 109.46797 * 90.00229 * 13 4 2 15 15 C 1.53000 * 109.46846 * 180.02562 * 14 13 4 16 16 N 1.46501 * 109.46989 * 179.97438 * 15 14 13 17 17 C 1.34773 * 119.99712 * 179.97438 * 16 15 14 18 18 O 1.21283 * 120.00480 * 0.02562 * 17 16 15 19 19 C 1.50703 * 119.99783 * 180.02562 * 17 16 15 20 20 H 1.09004 * 109.64184 * 300.42605 * 19 17 16 21 21 C 1.53879 * 109.64727 * 180.02562 * 19 17 16 22 22 C 1.55049 * 106.62285 * 192.96621 * 21 19 17 23 23 S 1.83286 * 102.56823 * 42.43421 * 22 21 19 24 24 O 1.42091 * 109.35378 * 90.18619 * 23 22 21 25 25 O 1.42094 * 109.35029 * 223.25595 * 23 22 21 26 26 C 1.54157 * 109.64908 * 60.72636 * 19 17 16 27 27 H 1.09002 * 109.46985 * 60.00894 * 1 2 3 28 28 H 1.08998 * 109.46802 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47346 * 299.99804 * 1 2 3 30 30 H 1.08997 * 109.47346 * 240.00196 * 2 1 3 31 31 H 1.09003 * 109.47290 * 59.99679 * 3 2 1 32 32 H 1.08996 * 109.47278 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.47149 * 299.99834 * 3 2 1 34 34 H 0.97003 * 119.99800 * 180.02562 * 8 7 5 35 35 H 1.09004 * 109.47074 * 210.00276 * 13 4 2 36 36 H 1.08999 * 109.47028 * 329.99929 * 13 4 2 37 37 H 1.09000 * 109.46865 * 299.99876 * 14 13 4 38 38 H 1.08996 * 109.47078 * 60.00073 * 14 13 4 39 39 H 1.09000 * 109.47261 * 299.99602 * 15 14 13 40 40 H 1.09009 * 109.47120 * 59.99810 * 15 14 13 41 41 H 0.96998 * 120.00095 * 0.02562 * 16 15 14 42 42 H 1.09004 * 110.02298 * 312.25672 * 21 19 17 43 43 H 1.09002 * 110.03016 * 73.67232 * 21 19 17 44 44 H 1.09006 * 110.78349 * 160.70455 * 22 21 19 45 45 H 1.08996 * 110.78549 * 284.16121 * 22 21 19 46 46 H 1.09002 * 110.32098 * 266.66839 * 26 19 17 47 47 H 1.09000 * 110.32151 * 28.85819 * 26 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.7761 -1.8242 1.0710 6 1 3.5102 -2.0691 1.8243 7 6 2.6006 -2.6589 -0.0243 8 7 1.4986 -2.5824 -0.7400 9 14 3.9283 -3.8904 -0.4824 10 1 4.1477 -4.8258 0.6500 11 1 3.5014 -4.6554 -1.6815 12 1 5.1914 -3.1687 -0.7800 13 6 1.6960 -0.1681 2.5265 14 6 0.3860 -0.7896 3.0148 15 6 0.0491 -0.2436 4.4038 16 7 -1.2055 -0.8382 4.8711 17 6 -1.7015 -0.5028 6.0785 18 8 -1.1095 0.2917 6.7780 19 6 -2.9919 -1.1149 6.5596 20 1 -3.7949 -0.8710 5.8639 21 6 -3.3347 -0.5683 7.9565 22 6 -4.4640 -1.4687 8.5203 23 16 -3.9078 -3.1497 8.0467 24 8 -3.1042 -3.6902 9.0865 25 8 -5.0147 -3.8895 7.5504 26 6 -2.8367 -2.6459 6.6517 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.6765 1.9564 0.8900 32 1 3.1299 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.3758 -3.1659 -1.5051 35 1 2.4984 -0.4200 3.2199 36 1 1.5872 0.9152 2.4748 37 1 -0.4163 -0.5377 2.3213 38 1 0.4949 -1.8729 3.0664 39 1 0.8514 -0.4951 5.0975 40 1 -0.0598 0.8398 4.3517 41 1 -1.6789 -1.4739 4.3119 42 1 -2.4585 -0.6197 8.6028 43 1 -3.6822 0.4620 7.8794 44 1 -4.5295 -1.3739 9.6043 45 1 -5.4189 -1.2307 8.0516 46 1 -3.1719 -3.1166 5.7274 47 1 -1.7992 -2.9095 6.8568 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714826782.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:57 Heat of formation + Delta-G solvation = -96.142959 kcal Electronic energy + Delta-G solvation = -26957.309437 eV Core-core repulsion = 23074.867972 eV Total energy + Delta-G solvation = -3882.441465 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.16994 -37.40796 -37.10621 -36.46918 -36.12337 -35.10414 -32.15175 -31.77742 -30.56630 -29.14723 -26.47213 -26.11023 -25.22519 -23.35030 -22.31380 -21.10784 -20.16173 -19.23309 -19.06001 -17.73707 -17.32209 -16.94851 -16.53215 -16.06554 -15.69391 -15.50562 -14.79647 -14.71542 -14.51581 -14.25270 -14.01032 -13.53739 -13.35161 -12.85785 -12.77229 -12.66240 -12.54361 -12.53067 -12.39891 -12.37460 -11.74982 -11.71666 -11.69023 -11.49066 -11.28117 -11.27022 -11.07952 -10.89116 -10.78801 -10.73582 -10.27044 -10.13554 -9.90378 -9.83854 -9.58668 -9.40688 -9.04647 -8.46965 -6.71448 -5.84810 -3.28579 -0.38513 2.05871 2.42365 2.98362 3.20873 3.34847 3.40963 3.43121 3.62136 3.92306 4.01200 4.16523 4.31238 4.43920 4.45461 4.72869 4.97240 5.02659 5.18483 5.21985 5.31898 5.39071 5.48495 5.55758 5.69727 5.86037 6.05143 6.14421 6.19408 6.37333 6.41323 6.46497 6.57448 6.61265 6.72960 6.80544 6.85877 6.97538 7.13669 7.42479 7.60006 7.68763 7.81123 8.06941 8.44454 9.19127 9.81780 10.35285 11.21722 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015641 B = 0.002483 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.730238 B =11273.706574 C =12223.709159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.180 3.820 3 C -0.165 4.165 4 N -0.582 5.582 5 C -0.257 4.257 6 H 0.063 0.937 7 C 0.007 3.993 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.283 1.283 11 H -0.291 1.291 12 H -0.284 1.284 13 C 0.153 3.847 14 C -0.156 4.156 15 C 0.117 3.883 16 N -0.719 5.719 17 C 0.520 3.480 18 O -0.538 6.538 19 C -0.105 4.105 20 H 0.119 0.881 21 C -0.102 4.102 22 C -0.587 4.587 23 S 2.394 3.606 24 O -0.933 6.933 25 O -0.936 6.936 26 C -0.593 4.593 27 H 0.026 0.974 28 H 0.071 0.929 29 H 0.026 0.974 30 H 0.097 0.903 31 H 0.038 0.962 32 H 0.045 0.955 33 H 0.038 0.962 34 H 0.253 0.747 35 H 0.043 0.957 36 H 0.040 0.960 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.402 0.598 42 H 0.100 0.900 43 H 0.104 0.896 44 H 0.141 0.859 45 H 0.139 0.861 46 H 0.149 0.851 47 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.705 4.515 13.344 18.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.073 3.927 3 C -0.224 4.224 4 N -0.302 5.302 5 C -0.386 4.386 6 H 0.081 0.919 7 C -0.192 4.192 8 N -0.538 5.538 9 Si 0.729 3.271 10 H -0.210 1.210 11 H -0.217 1.217 12 H -0.211 1.211 13 C 0.025 3.975 14 C -0.196 4.196 15 C -0.007 4.007 16 N -0.370 5.370 17 C 0.304 3.696 18 O -0.416 6.416 19 C -0.127 4.127 20 H 0.137 0.863 21 C -0.141 4.141 22 C -0.717 4.717 23 S 2.576 3.424 24 O -0.930 6.930 25 O -0.934 6.934 26 C -0.722 4.722 27 H 0.045 0.955 28 H 0.089 0.911 29 H 0.045 0.955 30 H 0.115 0.885 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.237 0.763 42 H 0.118 0.882 43 H 0.123 0.877 44 H 0.159 0.841 45 H 0.158 0.842 46 H 0.167 0.833 47 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -12.488 4.076 14.036 19.225 hybrid contribution 0.488 -0.303 -1.027 1.177 sum -12.000 3.773 13.009 18.096 Atomic orbital electron populations 1.22218 0.98941 1.01839 0.97398 1.20277 0.91510 0.88697 0.92213 1.22374 1.00719 1.00013 0.99284 1.43988 1.59689 1.27725 0.98802 1.19120 1.12115 0.99235 1.08168 0.91888 1.25020 0.96408 0.97399 1.00390 1.70009 1.23474 1.40143 1.20152 0.86437 0.81955 0.81005 0.77739 1.20959 1.21707 1.21082 1.20713 0.92842 0.95624 0.88344 1.22751 1.01985 1.02195 0.92686 1.21605 0.84321 0.97732 0.97009 1.46173 1.26067 1.46451 1.18267 1.20061 0.85926 0.81879 0.81747 1.90725 1.60642 1.34736 1.55460 1.21757 0.98936 0.91898 1.00146 0.86260 1.22058 0.97187 1.01251 0.93608 1.30654 1.08210 1.21325 1.11498 1.09020 0.76961 0.78619 0.77762 1.93640 1.69376 1.76232 1.53716 1.93627 1.50720 1.68520 1.80484 1.30637 1.17635 1.03027 1.20918 0.95525 0.91051 0.95456 0.88523 0.94324 0.93567 0.94255 0.93669 0.93890 0.94216 0.91241 0.91296 0.91747 0.91907 0.76323 0.88191 0.87734 0.84055 0.84248 0.83307 0.83764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 8.09 37.16 0.30 -2.63 16 2 C 0.18 3.94 2.39 -67.93 -0.16 3.78 16 3 C -0.16 -3.09 9.14 37.16 0.34 -2.75 16 4 N -0.58 -13.31 2.41 -165.66 -0.40 -13.71 16 5 C -0.26 -6.59 9.57 -15.06 -0.14 -6.73 16 6 H 0.06 1.62 7.89 -52.49 -0.41 1.21 16 7 C 0.01 0.18 4.85 -17.43 -0.08 0.10 16 8 N -0.89 -23.92 10.40 55.49 0.58 -23.35 16 9 Si 0.90 20.85 29.59 -169.99 -5.03 15.82 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 C 0.15 2.89 5.13 -4.04 -0.02 2.87 16 14 C -0.16 -2.57 5.38 -26.73 -0.14 -2.71 16 15 C 0.12 1.62 5.67 -4.04 -0.02 1.60 16 16 N -0.72 -8.19 5.47 -60.29 -0.33 -8.52 16 17 C 0.52 5.83 7.00 -10.99 -0.08 5.75 16 18 O -0.54 -8.01 15.80 5.55 0.09 -7.92 16 19 C -0.10 -0.72 2.94 -90.71 -0.27 -0.98 16 20 H 0.12 0.50 8.14 -51.93 -0.42 0.07 16 21 C -0.10 -0.63 5.27 -25.19 -0.13 -0.76 16 22 C -0.59 -2.57 7.31 38.24 0.28 -2.29 16 23 S 2.39 17.11 6.10 -107.50 -0.66 16.45 16 24 O -0.93 -10.48 18.15 -57.73 -1.05 -11.53 16 25 O -0.94 -9.82 18.15 -57.73 -1.05 -10.86 16 26 C -0.59 -3.65 6.61 37.76 0.25 -3.40 16 27 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 1.63 7.40 -51.93 -0.38 1.24 16 29 H 0.03 0.50 6.11 -51.93 -0.32 0.18 16 30 H 0.10 2.47 5.85 -51.93 -0.30 2.16 16 31 H 0.04 0.67 6.61 -51.93 -0.34 0.33 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.25 6.68 8.31 -40.82 -0.34 6.35 16 35 H 0.04 0.82 8.04 -51.93 -0.42 0.40 16 36 H 0.04 0.71 6.34 -51.93 -0.33 0.38 16 37 H 0.07 1.18 5.43 -51.93 -0.28 0.90 16 38 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.06 0.89 8.14 -51.92 -0.42 0.46 16 41 H 0.40 3.79 8.41 -40.82 -0.34 3.45 16 42 H 0.10 0.73 7.72 -51.93 -0.40 0.33 16 43 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.14 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.14 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.15 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.14 0.96 7.88 -51.93 -0.41 0.55 16 LS Contribution 382.29 15.07 5.76 5.76 Total: -1.00 -34.66 382.29 -9.70 -44.36 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -7.73 Total: 1.67 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: 0.11 Total: -8.16 kcal Atomic # 7 Polarization: -45.43 SS G_CDS: -0.15 Total: -45.58 kcal Atomic # 8 Polarization: -28.31 SS G_CDS: -2.01 Total: -30.31 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.03 Total: 15.82 kcal Atomic # 16 Polarization: 17.11 SS G_CDS: -0.66 Total: 16.45 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.66 -9.70 -44.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714826782.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.782 kcal (2) G-P(sol) polarization free energy of solvation -34.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds