Wall clock time and date at job start Tue Mar 31 2020 16:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.46841 * 2 1 4 4 N 1.46500 * 109.47075 * 119.99535 * 2 1 3 5 5 C 1.36937 * 119.99961 * 118.26949 * 4 2 1 6 6 H 1.07999 * 120.00396 * 150.53462 * 5 4 2 7 7 C 1.38820 * 119.99884 * 330.53117 * 5 4 2 8 8 N 1.31619 * 119.99532 * 341.58156 * 7 5 4 9 9 Si 1.86796 * 120.00231 * 161.58100 * 7 5 4 10 10 H 1.48506 * 109.46890 * 59.99910 * 9 7 5 11 11 H 1.48501 * 109.47030 * 180.02562 * 9 7 5 12 12 H 1.48493 * 109.47058 * 300.00192 * 9 7 5 13 13 C 1.46505 * 120.00161 * 298.26372 * 4 2 1 14 14 C 1.52999 * 109.46797 * 90.00229 * 13 4 2 15 15 C 1.53000 * 109.46846 * 180.02562 * 14 13 4 16 16 N 1.46501 * 109.46989 * 179.97438 * 15 14 13 17 17 C 1.34773 * 119.99712 * 179.97438 * 16 15 14 18 18 O 1.21283 * 120.00480 * 0.02562 * 17 16 15 19 19 C 1.50703 * 119.99783 * 180.02562 * 17 16 15 20 20 H 1.09004 * 109.64184 * 300.42605 * 19 17 16 21 21 C 1.53879 * 109.64727 * 180.02562 * 19 17 16 22 22 C 1.55049 * 106.62285 * 192.96621 * 21 19 17 23 23 S 1.83286 * 102.56823 * 42.43421 * 22 21 19 24 24 O 1.42091 * 109.35378 * 90.18619 * 23 22 21 25 25 O 1.42094 * 109.35029 * 223.25595 * 23 22 21 26 26 C 1.54157 * 109.64908 * 60.72636 * 19 17 16 27 27 H 1.09002 * 109.46985 * 60.00894 * 1 2 3 28 28 H 1.08998 * 109.46802 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47346 * 299.99804 * 1 2 3 30 30 H 1.08997 * 109.47346 * 240.00196 * 2 1 3 31 31 H 1.09003 * 109.47290 * 59.99679 * 3 2 1 32 32 H 1.08996 * 109.47278 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.47149 * 299.99834 * 3 2 1 34 34 H 0.97003 * 119.99800 * 180.02562 * 8 7 5 35 35 H 1.09004 * 109.47074 * 210.00276 * 13 4 2 36 36 H 1.08999 * 109.47028 * 329.99929 * 13 4 2 37 37 H 1.09000 * 109.46865 * 299.99876 * 14 13 4 38 38 H 1.08996 * 109.47078 * 60.00073 * 14 13 4 39 39 H 1.09000 * 109.47261 * 299.99602 * 15 14 13 40 40 H 1.09009 * 109.47120 * 59.99810 * 15 14 13 41 41 H 0.96998 * 120.00095 * 0.02562 * 16 15 14 42 42 H 1.09004 * 110.02298 * 312.25672 * 21 19 17 43 43 H 1.09002 * 110.03016 * 73.67232 * 21 19 17 44 44 H 1.09006 * 110.78349 * 160.70455 * 22 21 19 45 45 H 1.08996 * 110.78549 * 284.16121 * 22 21 19 46 46 H 1.09002 * 110.32098 * 266.66839 * 26 19 17 47 47 H 1.09000 * 110.32151 * 28.85819 * 26 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.7761 -1.8242 1.0710 6 1 3.5102 -2.0691 1.8243 7 6 2.6006 -2.6589 -0.0243 8 7 1.4986 -2.5824 -0.7400 9 14 3.9283 -3.8904 -0.4824 10 1 4.1477 -4.8258 0.6500 11 1 3.5014 -4.6554 -1.6815 12 1 5.1914 -3.1687 -0.7800 13 6 1.6960 -0.1681 2.5265 14 6 0.3860 -0.7896 3.0148 15 6 0.0491 -0.2436 4.4038 16 7 -1.2055 -0.8382 4.8711 17 6 -1.7015 -0.5028 6.0785 18 8 -1.1095 0.2917 6.7780 19 6 -2.9919 -1.1149 6.5596 20 1 -3.7949 -0.8710 5.8639 21 6 -3.3347 -0.5683 7.9565 22 6 -4.4640 -1.4687 8.5203 23 16 -3.9078 -3.1497 8.0467 24 8 -3.1042 -3.6902 9.0865 25 8 -5.0147 -3.8895 7.5504 26 6 -2.8367 -2.6459 6.6517 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.6765 1.9564 0.8900 32 1 3.1299 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.3758 -3.1659 -1.5051 35 1 2.4984 -0.4200 3.2199 36 1 1.5872 0.9152 2.4748 37 1 -0.4163 -0.5377 2.3213 38 1 0.4949 -1.8729 3.0664 39 1 0.8514 -0.4951 5.0975 40 1 -0.0598 0.8398 4.3517 41 1 -1.6789 -1.4739 4.3119 42 1 -2.4585 -0.6197 8.6028 43 1 -3.6822 0.4620 7.8794 44 1 -4.5295 -1.3739 9.6043 45 1 -5.4189 -1.2307 8.0516 46 1 -3.1719 -3.1166 5.7274 47 1 -1.7992 -2.9095 6.8568 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714826782.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:55 Heat of formation + Delta-G solvation = -121.812199 kcal Electronic energy + Delta-G solvation = -26958.422539 eV Core-core repulsion = 23074.867972 eV Total energy + Delta-G solvation = -3883.554567 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.05394 -38.69914 -38.10170 -37.18458 -36.83576 -36.23429 -33.87415 -33.24334 -31.41771 -30.51615 -27.69535 -27.37472 -26.42831 -24.84687 -23.18259 -22.40955 -21.13348 -20.69122 -19.82156 -18.73109 -18.45840 -17.88327 -17.33259 -16.87883 -16.71967 -16.56097 -16.41304 -15.98636 -15.43422 -15.33206 -14.95275 -14.81772 -14.43538 -14.34798 -14.20000 -13.43923 -13.37652 -13.28895 -13.26029 -13.20899 -13.09714 -13.01535 -12.90176 -12.84200 -12.73316 -12.60867 -12.35563 -12.22801 -12.03988 -11.84823 -11.78878 -11.57711 -11.31401 -11.18908 -11.13102 -10.83491 -10.38616 -10.07906 -8.56300 -7.80930 -5.25241 -0.93283 1.44160 1.47820 1.50910 1.55770 1.67373 2.14904 2.55042 2.65105 3.05495 3.33147 3.37231 3.48678 3.62626 3.66925 3.78132 4.02248 4.15758 4.17548 4.31795 4.50784 4.53734 4.56954 4.59902 4.73603 4.77744 4.82026 4.89042 4.94604 4.94994 4.99318 5.02255 5.10552 5.16670 5.22806 5.38080 5.40466 5.45041 5.61119 5.72583 5.85534 6.06377 6.50401 6.53258 7.19145 7.26383 7.98976 8.44982 9.22261 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015641 B = 0.002483 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.730238 B =11273.706574 C =12223.709159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.174 3.826 3 C -0.154 4.154 4 N -0.597 5.597 5 C -0.264 4.264 6 H 0.056 0.944 7 C -0.036 4.036 8 N -0.912 5.912 9 Si 0.951 3.049 10 H -0.281 1.281 11 H -0.295 1.295 12 H -0.285 1.285 13 C 0.149 3.851 14 C -0.135 4.135 15 C 0.129 3.871 16 N -0.717 5.717 17 C 0.518 3.482 18 O -0.577 6.577 19 C -0.100 4.100 20 H 0.158 0.842 21 C -0.107 4.107 22 C -0.556 4.556 23 S 2.398 3.602 24 O -0.983 6.983 25 O -0.973 6.973 26 C -0.588 4.588 27 H 0.040 0.960 28 H 0.040 0.960 29 H 0.046 0.954 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.036 0.964 33 H 0.058 0.942 34 H 0.247 0.753 35 H 0.038 0.962 36 H 0.057 0.943 37 H 0.068 0.932 38 H 0.045 0.955 39 H 0.055 0.945 40 H 0.066 0.934 41 H 0.413 0.587 42 H 0.084 0.916 43 H 0.118 0.882 44 H 0.158 0.842 45 H 0.170 0.830 46 H 0.171 0.829 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.287 6.060 13.848 20.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.068 3.932 3 C -0.213 4.213 4 N -0.318 5.318 5 C -0.394 4.394 6 H 0.074 0.926 7 C -0.233 4.233 8 N -0.557 5.557 9 Si 0.780 3.220 10 H -0.207 1.207 11 H -0.221 1.221 12 H -0.212 1.212 13 C 0.022 3.978 14 C -0.176 4.176 15 C 0.005 3.995 16 N -0.368 5.368 17 C 0.304 3.696 18 O -0.457 6.457 19 C -0.122 4.122 20 H 0.175 0.825 21 C -0.146 4.146 22 C -0.688 4.688 23 S 2.586 3.414 24 O -0.980 6.980 25 O -0.970 6.970 26 C -0.718 4.718 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.055 0.945 33 H 0.077 0.923 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.076 0.924 37 H 0.086 0.914 38 H 0.064 0.936 39 H 0.073 0.927 40 H 0.085 0.915 41 H 0.250 0.750 42 H 0.103 0.897 43 H 0.137 0.863 44 H 0.176 0.824 45 H 0.188 0.812 46 H 0.189 0.811 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -14.083 5.582 14.554 21.007 hybrid contribution 1.014 -0.682 -1.162 1.686 sum -13.069 4.901 13.392 19.343 Atomic orbital electron populations 1.22018 0.97592 1.00314 0.98993 1.20255 0.92576 0.89950 0.90463 1.22216 1.00051 0.97949 1.01034 1.44138 1.59969 1.27197 1.00473 1.19298 1.12276 0.99945 1.07919 0.92647 1.25554 0.97895 0.99088 1.00780 1.70137 1.24507 1.40762 1.20256 0.85612 0.79933 0.79303 0.77112 1.20733 1.22150 1.21183 1.20817 0.93825 0.96597 0.86543 1.22393 1.00538 1.00409 0.94219 1.21263 0.85402 0.97797 0.95054 1.46079 1.25296 1.46573 1.18843 1.20746 0.86830 0.81129 0.80868 1.90713 1.62038 1.36584 1.56338 1.21862 0.97423 0.91531 1.01339 0.82479 1.22120 0.97274 1.02285 0.92952 1.30494 1.08787 1.16702 1.12852 1.08664 0.75998 0.79718 0.77069 1.93574 1.70476 1.78434 1.55490 1.93577 1.51687 1.70788 1.80957 1.30581 1.16977 1.02871 1.21348 0.94136 0.94110 0.93467 0.92472 0.92655 0.94515 0.92327 0.94382 0.94396 0.92440 0.91378 0.93639 0.92704 0.91549 0.75031 0.89744 0.86322 0.82391 0.81190 0.81130 0.84537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.11 8.09 71.98 0.58 -4.53 16 2 C 0.17 7.55 2.39 44.99 0.11 7.66 16 3 C -0.15 -5.48 9.14 71.98 0.66 -4.82 16 4 N -0.60 -27.24 2.41 -678.02 -1.64 -28.88 16 5 C -0.26 -13.71 9.57 84.04 0.80 -12.90 16 6 H 0.06 2.90 7.89 -2.91 -0.02 2.88 16 7 C -0.04 -1.91 4.85 84.86 0.41 -1.50 16 8 N -0.91 -49.70 10.40 21.65 0.23 -49.48 16 9 Si 0.95 43.50 29.59 68.60 2.03 45.53 16 10 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 11 H -0.30 -13.60 7.11 99.48 0.71 -12.89 16 12 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 13 C 0.15 5.52 5.13 86.38 0.44 5.96 16 14 C -0.14 -4.35 5.38 30.59 0.16 -4.18 16 15 C 0.13 3.42 5.67 86.38 0.49 3.91 16 16 N -0.72 -15.03 5.47 -463.05 -2.53 -17.56 16 17 C 0.52 10.60 7.00 87.66 0.61 11.22 16 18 O -0.58 -16.44 15.80 -3.04 -0.05 -16.49 16 19 C -0.10 -1.07 2.94 -10.85 -0.03 -1.10 16 20 H 0.16 0.56 8.14 -2.38 -0.02 0.54 16 21 C -0.11 -1.02 5.27 31.59 0.17 -0.85 16 22 C -0.56 -3.03 7.31 72.68 0.53 -2.50 16 23 S 2.40 31.56 6.10 -56.49 -0.34 31.22 16 24 O -0.98 -22.38 18.15 -127.47 -2.31 -24.69 16 25 O -0.97 -19.46 18.15 -127.47 -2.31 -21.78 16 26 C -0.59 -6.15 6.61 72.37 0.48 -5.67 16 27 H 0.04 1.43 8.14 -2.39 -0.02 1.42 16 28 H 0.04 1.84 7.40 -2.39 -0.02 1.82 16 29 H 0.05 1.62 6.11 -2.39 -0.01 1.61 16 30 H 0.06 2.96 5.85 -2.39 -0.01 2.94 16 31 H 0.05 1.77 6.61 -2.39 -0.02 1.75 16 32 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.25 13.31 8.31 -92.71 -0.77 12.54 16 35 H 0.04 1.43 8.04 -2.39 -0.02 1.41 16 36 H 0.06 1.92 6.34 -2.39 -0.02 1.91 16 37 H 0.07 2.21 5.43 -2.39 -0.01 2.20 16 38 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 41 H 0.41 6.89 8.41 -92.71 -0.78 6.11 16 42 H 0.08 1.11 7.72 -2.38 -0.02 1.09 16 43 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.16 0.49 8.14 -2.38 -0.02 0.47 16 45 H 0.17 0.03 8.14 -2.39 -0.02 0.01 16 46 H 0.17 1.02 8.14 -2.39 -0.02 1.00 16 47 H 0.14 1.72 7.88 -2.39 -0.02 1.71 16 Total: -1.00 -76.84 382.29 -1.33 -78.16 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: 0.19 Total: 13.26 kcal Atomic # 6 Polarization: -14.72 SS G_CDS: 5.42 Total: -9.30 kcal Atomic # 7 Polarization: -91.97 SS G_CDS: -3.94 Total: -95.91 kcal Atomic # 8 Polarization: -58.28 SS G_CDS: -4.67 Total: -62.96 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Atomic # 16 Polarization: 31.56 SS G_CDS: -0.34 Total: 31.22 kcal Total: -76.84 -1.33 -78.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714826782.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.650 kcal (2) G-P(sol) polarization free energy of solvation -76.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds