Wall clock time and date at job start Tue Mar 31 2020 16:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46602 * 2 1 4 4 N 1.46495 * 109.47273 * 119.99682 * 2 1 3 5 5 C 1.46498 * 119.99984 * 117.68639 * 4 2 1 6 6 C 1.52997 * 109.47288 * 276.22531 * 5 4 2 7 7 N 1.46498 * 109.47288 * 180.02562 * 6 5 4 8 8 C 1.46502 * 119.99639 * 269.99789 * 7 6 5 9 9 C 1.36938 * 120.00031 * 90.00198 * 7 6 5 10 10 H 1.07995 * 119.99758 * 20.71070 * 9 7 6 11 11 C 1.38816 * 119.99883 * 200.71411 * 9 7 6 12 12 N 1.31626 * 119.99986 * 11.49131 * 11 9 7 13 13 Si 1.86795 * 120.00042 * 191.49136 * 11 9 7 14 14 H 1.48498 * 109.47071 * 90.00082 * 13 11 9 15 15 H 1.48501 * 109.47290 * 210.00110 * 13 11 9 16 16 H 1.48505 * 109.47113 * 329.99795 * 13 11 9 17 17 C 1.34777 * 120.00048 * 297.68437 * 4 2 1 18 18 O 1.21281 * 119.99980 * 3.87576 * 17 4 2 19 19 C 1.50702 * 119.99790 * 183.86817 * 17 4 2 20 20 H 1.08996 * 110.05439 * 308.15325 * 19 17 4 21 21 C 1.53876 * 110.02634 * 186.74865 * 19 17 4 22 22 C 1.54160 * 108.70570 * 193.53071 * 21 19 17 23 23 S 1.82918 * 105.08480 * 27.90971 * 22 21 19 24 24 O 1.42098 * 109.35571 * 111.27965 * 23 22 21 25 25 O 1.42101 * 109.35109 * 244.47436 * 23 22 21 26 26 C 1.55048 * 110.02451 * 69.56130 * 19 17 4 27 27 H 1.09000 * 109.47590 * 305.71966 * 1 2 3 28 28 H 1.09000 * 109.47127 * 65.72689 * 1 2 3 29 29 H 1.09008 * 109.46664 * 185.71901 * 1 2 3 30 30 H 1.08994 * 109.47267 * 240.00393 * 2 1 3 31 31 H 1.09004 * 109.46974 * 182.71751 * 3 2 1 32 32 H 1.09008 * 109.46983 * 302.71296 * 3 2 1 33 33 H 1.08998 * 109.47676 * 62.70976 * 3 2 1 34 34 H 1.09003 * 109.47319 * 36.22473 * 5 4 2 35 35 H 1.09003 * 109.47290 * 156.22145 * 5 4 2 36 36 H 1.09003 * 109.46893 * 300.00202 * 6 5 4 37 37 H 1.09003 * 109.47271 * 59.99602 * 6 5 4 38 38 H 1.08994 * 109.47027 * 93.61379 * 8 7 6 39 39 H 1.09007 * 109.46811 * 213.60635 * 8 7 6 40 40 H 1.08995 * 109.47226 * 333.60710 * 8 7 6 41 41 H 0.96994 * 119.99889 * 180.02562 * 12 11 9 42 42 H 1.09002 * 109.64981 * 73.67614 * 21 19 17 43 43 H 1.09003 * 109.54218 * 313.31802 * 21 19 17 44 44 H 1.08999 * 110.31994 * 269.00822 * 22 21 19 45 45 H 1.09007 * 110.40731 * 146.85458 * 22 21 19 46 46 H 1.08996 * 110.79125 * 43.45239 * 26 19 17 47 47 H 1.09004 * 110.78696 * 279.98611 * 26 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 2.8183 -1.9105 1.0624 6 6 1.8888 -3.1139 0.8936 7 7 2.6887 -4.3340 0.7604 8 6 3.1161 -4.7886 -0.5651 9 6 3.0369 -5.0495 1.8749 10 1 2.4740 -4.9328 2.7891 11 6 4.1134 -5.9247 1.8295 12 7 4.9350 -5.9047 0.8013 13 14 4.3961 -7.1309 3.2274 14 1 3.6740 -8.3969 2.9426 15 1 5.8494 -7.4081 3.3559 16 1 3.8898 -6.5467 4.4954 17 6 1.7318 -0.2034 2.4197 18 8 1.0115 0.7658 2.5331 19 6 2.3062 -0.8631 3.6469 20 1 2.1001 -1.9332 3.6270 21 6 1.7029 -0.2337 4.9148 22 6 2.5401 -0.6743 6.1319 23 16 4.2191 -0.9747 5.4711 24 8 5.1061 0.0170 5.9703 25 8 4.5415 -2.3514 5.6128 26 6 3.8357 -0.6181 3.7147 27 1 -0.3634 0.6000 0.8343 28 1 -0.3633 0.4225 -0.9368 29 1 -0.3633 -1.0227 0.1024 30 1 1.8934 -0.5137 -0.8900 31 1 3.1289 1.4430 -0.0487 32 1 1.6373 1.9702 -0.8647 33 1 1.7168 1.9422 0.9132 34 1 3.4660 -1.8265 0.1897 35 1 3.4282 -2.0449 1.9558 36 1 1.2411 -3.1980 1.7663 37 1 1.2789 -2.9795 0.0002 38 1 4.1109 -4.3984 -0.7798 39 1 3.1412 -5.8782 -0.5848 40 1 2.4141 -4.4277 -1.3168 41 1 5.6870 -6.5165 0.7694 42 1 0.6734 -0.5703 5.0369 43 1 1.7252 0.8527 4.8286 44 1 2.1325 -1.5900 6.5602 45 1 2.5645 0.1158 6.8825 46 1 4.0729 0.4171 3.4693 47 1 4.3671 -1.3047 3.0556 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717949563.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:01 Heat of formation + Delta-G solvation = -74.934227 kcal Electronic energy + Delta-G solvation = -28903.767640 eV Core-core repulsion = 25022.245855 eV Total energy + Delta-G solvation = -3881.521785 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.42865 -37.03619 -36.78823 -36.16667 -35.92588 -35.11304 -32.78557 -31.21029 -29.98466 -27.93066 -27.09238 -26.02175 -25.83501 -23.70305 -23.06167 -21.15426 -20.61784 -18.91058 -18.70352 -17.22592 -16.93265 -16.68947 -16.22380 -15.90326 -15.59087 -15.15382 -14.79444 -14.43620 -14.18436 -14.12030 -13.76694 -13.53679 -13.28004 -13.12977 -12.77114 -12.60135 -12.38978 -12.36901 -12.13540 -12.11202 -11.98664 -11.86004 -11.73947 -11.40322 -11.27765 -11.13334 -11.05287 -10.94131 -10.87448 -10.80395 -10.53119 -10.41219 -10.21372 -10.00994 -9.85782 -9.36407 -8.70909 -8.46309 -6.86930 -5.79458 -3.25275 -0.01419 2.38940 2.68100 3.05190 3.40393 3.47854 3.50479 3.55244 3.95180 4.20444 4.37972 4.45858 4.50284 4.67108 4.71179 4.86089 5.08724 5.17017 5.23805 5.32851 5.37028 5.38674 5.46485 5.52600 5.63387 5.68213 5.73561 5.77976 5.84593 5.89509 5.93994 6.00965 6.14260 6.25087 6.32173 6.39424 6.63145 6.68513 6.86634 7.32606 7.56043 7.64178 7.76495 8.25749 8.31888 9.16540 9.78669 10.25401 11.25493 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.008541 B = 0.006172 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3277.542882 B = 4535.327838 C = 7078.345493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.144 3.856 3 C -0.169 4.169 4 N -0.597 5.597 5 C 0.069 3.931 6 C 0.140 3.860 7 N -0.598 5.598 8 C 0.163 3.837 9 C -0.262 4.262 10 H 0.071 0.929 11 C 0.007 3.993 12 N -0.907 5.907 13 Si 0.901 3.099 14 H -0.288 1.288 15 H -0.290 1.290 16 H -0.273 1.273 17 C 0.536 3.464 18 O -0.544 6.544 19 C -0.114 4.114 20 H 0.125 0.875 21 C -0.093 4.093 22 C -0.593 4.593 23 S 2.387 3.613 24 O -0.942 6.942 25 O -0.919 6.919 26 C -0.586 4.586 27 H 0.075 0.925 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.086 0.914 31 H 0.052 0.948 32 H 0.060 0.940 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.089 0.911 36 H 0.044 0.956 37 H 0.041 0.959 38 H 0.027 0.973 39 H 0.050 0.950 40 H -0.005 1.005 41 H 0.254 0.746 42 H 0.096 0.904 43 H 0.095 0.905 44 H 0.139 0.861 45 H 0.139 0.861 46 H 0.140 0.860 47 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.565 13.140 2.711 14.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.041 3.959 3 C -0.227 4.227 4 N -0.329 5.329 5 C -0.056 4.056 6 C 0.011 3.989 7 N -0.321 5.321 8 C 0.019 3.981 9 C -0.392 4.392 10 H 0.089 0.911 11 C -0.191 4.191 12 N -0.552 5.552 13 Si 0.731 3.269 14 H -0.215 1.215 15 H -0.216 1.216 16 H -0.198 1.198 17 C 0.323 3.677 18 O -0.422 6.422 19 C -0.137 4.137 20 H 0.143 0.857 21 C -0.132 4.132 22 C -0.723 4.723 23 S 2.570 3.430 24 O -0.939 6.939 25 O -0.916 6.916 26 C -0.714 4.714 27 H 0.094 0.906 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.104 0.896 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.107 0.893 36 H 0.063 0.937 37 H 0.059 0.941 38 H 0.045 0.955 39 H 0.069 0.931 40 H 0.013 0.987 41 H 0.064 0.936 42 H 0.114 0.886 43 H 0.114 0.886 44 H 0.157 0.843 45 H 0.157 0.843 46 H 0.158 0.842 47 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -5.920 13.231 3.161 14.835 hybrid contribution -0.238 -0.644 0.172 0.708 sum -6.159 12.587 3.333 14.404 Atomic orbital electron populations 1.22198 0.94983 1.02588 1.02651 1.20994 0.94603 0.93035 0.87288 1.22203 1.00812 0.96257 1.03424 1.48240 1.52780 1.26872 1.05011 1.23120 0.95481 0.83309 1.03666 1.21177 0.92948 0.85611 0.99124 1.43963 1.61786 1.22427 1.03930 1.20844 0.95190 0.99220 0.82875 1.19225 1.09511 1.18960 0.91469 0.91104 1.24983 0.95685 1.00777 0.97687 1.70066 1.15640 1.38877 1.30592 0.86289 0.77278 0.81220 0.82158 1.21544 1.21590 1.19839 1.19823 0.80340 0.83544 0.84010 1.90603 1.37734 1.27497 1.86401 1.22037 0.92170 1.04162 0.95307 0.85685 1.21699 1.00673 1.02980 0.87850 1.30524 1.21939 1.11813 1.08011 1.09204 0.78539 0.75814 0.79488 1.93599 1.61289 1.61237 1.77798 1.93708 1.82233 1.31229 1.84440 1.30823 1.02682 1.12704 1.25223 0.90634 0.92318 0.92476 0.89625 0.92923 0.92065 0.90375 0.90879 0.89336 0.93737 0.94099 0.95513 0.93107 0.98665 0.93622 0.88553 0.88620 0.84258 0.84323 0.84164 0.82796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.97 9.06 37.16 0.34 -1.63 16 2 C 0.14 1.77 3.28 -67.93 -0.22 1.55 16 3 C -0.17 -1.94 9.13 37.16 0.34 -1.60 16 4 N -0.60 -8.15 2.42 -166.11 -0.40 -8.55 16 5 C 0.07 1.09 5.39 -4.04 -0.02 1.07 16 6 C 0.14 2.55 6.03 -4.04 -0.02 2.53 16 7 N -0.60 -13.78 2.93 -181.12 -0.53 -14.31 16 8 C 0.16 3.76 9.01 59.85 0.54 4.30 16 9 C -0.26 -6.75 9.69 -15.06 -0.15 -6.90 16 10 H 0.07 1.78 7.84 -52.49 -0.41 1.37 16 11 C 0.01 0.20 5.13 -17.43 -0.09 0.11 16 12 N -0.91 -25.30 10.50 55.49 0.58 -24.72 16 13 Si 0.90 21.67 29.57 -169.99 -5.03 16.65 16 14 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 15 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 16 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 17 C 0.54 7.32 6.39 -10.98 -0.07 7.25 16 18 O -0.54 -8.13 12.03 5.56 0.07 -8.07 16 19 C -0.11 -1.37 2.03 -90.23 -0.18 -1.55 16 20 H 0.13 1.55 7.65 -51.93 -0.40 1.15 16 21 C -0.09 -0.91 5.32 -25.67 -0.14 -1.04 16 22 C -0.59 -5.16 7.26 37.76 0.27 -4.89 16 23 S 2.39 29.16 6.11 -107.50 -0.66 28.51 16 24 O -0.94 -13.92 18.15 -57.71 -1.05 -14.96 16 25 O -0.92 -15.59 18.15 -57.71 -1.05 -16.63 16 26 C -0.59 -6.71 6.17 38.24 0.24 -6.47 16 27 H 0.07 1.00 6.38 -51.93 -0.33 0.67 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.71 8.14 -51.92 -0.42 0.28 16 30 H 0.09 1.01 7.86 -51.93 -0.41 0.60 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.60 8.14 -51.92 -0.42 0.17 16 33 H 0.08 1.02 6.06 -51.93 -0.31 0.70 16 34 H 0.07 1.19 8.04 -51.93 -0.42 0.78 16 35 H 0.09 1.45 4.03 -51.93 -0.21 1.24 16 36 H 0.04 0.80 8.03 -51.93 -0.42 0.38 16 37 H 0.04 0.70 7.87 -51.93 -0.41 0.29 16 38 H 0.03 0.66 7.50 -51.93 -0.39 0.27 16 39 H 0.05 1.29 7.03 -51.92 -0.37 0.92 16 40 H -0.01 -0.10 7.85 -51.93 -0.41 -0.51 16 41 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 42 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 43 H 0.10 0.91 7.58 -51.93 -0.39 0.52 16 44 H 0.14 1.07 8.14 -51.93 -0.42 0.64 16 45 H 0.14 0.93 8.14 -51.93 -0.42 0.50 16 46 H 0.14 1.36 8.10 -51.93 -0.42 0.94 16 47 H 0.15 1.90 6.02 -51.93 -0.31 1.59 16 LS Contribution 378.19 15.07 5.70 5.70 Total: -1.00 -33.85 378.19 -9.23 -43.08 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -7.70 Total: 0.60 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: 0.83 Total: -7.28 kcal Atomic # 7 Polarization: -47.23 SS G_CDS: -0.35 Total: -47.58 kcal Atomic # 8 Polarization: -37.64 SS G_CDS: -2.03 Total: -39.66 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.65 kcal Atomic # 16 Polarization: 29.16 SS G_CDS: -0.66 Total: 28.51 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.85 -9.23 -43.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717949563.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.859 kcal (2) G-P(sol) polarization free energy of solvation -33.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds