Wall clock time and date at job start Tue Mar 31 2020 16:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46602 * 2 1 4 4 N 1.46495 * 109.47273 * 119.99682 * 2 1 3 5 5 C 1.46498 * 119.99984 * 117.68639 * 4 2 1 6 6 C 1.52997 * 109.47288 * 276.22531 * 5 4 2 7 7 N 1.46498 * 109.47288 * 180.02562 * 6 5 4 8 8 C 1.46502 * 119.99639 * 269.99789 * 7 6 5 9 9 C 1.36938 * 120.00031 * 90.00198 * 7 6 5 10 10 H 1.07995 * 119.99758 * 20.71070 * 9 7 6 11 11 C 1.38816 * 119.99883 * 200.71411 * 9 7 6 12 12 N 1.31626 * 119.99986 * 11.49131 * 11 9 7 13 13 Si 1.86795 * 120.00042 * 191.49136 * 11 9 7 14 14 H 1.48498 * 109.47071 * 90.00082 * 13 11 9 15 15 H 1.48501 * 109.47290 * 210.00110 * 13 11 9 16 16 H 1.48505 * 109.47113 * 329.99795 * 13 11 9 17 17 C 1.34777 * 120.00048 * 297.68437 * 4 2 1 18 18 O 1.21281 * 119.99980 * 3.87576 * 17 4 2 19 19 C 1.50702 * 119.99790 * 183.86817 * 17 4 2 20 20 H 1.08996 * 110.05439 * 308.15325 * 19 17 4 21 21 C 1.53876 * 110.02634 * 186.74865 * 19 17 4 22 22 C 1.54160 * 108.70570 * 193.53071 * 21 19 17 23 23 S 1.82918 * 105.08480 * 27.90971 * 22 21 19 24 24 O 1.42098 * 109.35571 * 111.27965 * 23 22 21 25 25 O 1.42101 * 109.35109 * 244.47436 * 23 22 21 26 26 C 1.55048 * 110.02451 * 69.56130 * 19 17 4 27 27 H 1.09000 * 109.47590 * 305.71966 * 1 2 3 28 28 H 1.09000 * 109.47127 * 65.72689 * 1 2 3 29 29 H 1.09008 * 109.46664 * 185.71901 * 1 2 3 30 30 H 1.08994 * 109.47267 * 240.00393 * 2 1 3 31 31 H 1.09004 * 109.46974 * 182.71751 * 3 2 1 32 32 H 1.09008 * 109.46983 * 302.71296 * 3 2 1 33 33 H 1.08998 * 109.47676 * 62.70976 * 3 2 1 34 34 H 1.09003 * 109.47319 * 36.22473 * 5 4 2 35 35 H 1.09003 * 109.47290 * 156.22145 * 5 4 2 36 36 H 1.09003 * 109.46893 * 300.00202 * 6 5 4 37 37 H 1.09003 * 109.47271 * 59.99602 * 6 5 4 38 38 H 1.08994 * 109.47027 * 93.61379 * 8 7 6 39 39 H 1.09007 * 109.46811 * 213.60635 * 8 7 6 40 40 H 1.08995 * 109.47226 * 333.60710 * 8 7 6 41 41 H 0.96994 * 119.99889 * 180.02562 * 12 11 9 42 42 H 1.09002 * 109.64981 * 73.67614 * 21 19 17 43 43 H 1.09003 * 109.54218 * 313.31802 * 21 19 17 44 44 H 1.08999 * 110.31994 * 269.00822 * 22 21 19 45 45 H 1.09007 * 110.40731 * 146.85458 * 22 21 19 46 46 H 1.08996 * 110.79125 * 43.45239 * 26 19 17 47 47 H 1.09004 * 110.78696 * 279.98611 * 26 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 2.8183 -1.9105 1.0624 6 6 1.8888 -3.1139 0.8936 7 7 2.6887 -4.3340 0.7604 8 6 3.1161 -4.7886 -0.5651 9 6 3.0369 -5.0495 1.8749 10 1 2.4740 -4.9328 2.7891 11 6 4.1134 -5.9247 1.8295 12 7 4.9350 -5.9047 0.8013 13 14 4.3961 -7.1309 3.2274 14 1 3.6740 -8.3969 2.9426 15 1 5.8494 -7.4081 3.3559 16 1 3.8898 -6.5467 4.4954 17 6 1.7318 -0.2034 2.4197 18 8 1.0115 0.7658 2.5331 19 6 2.3062 -0.8631 3.6469 20 1 2.1001 -1.9332 3.6270 21 6 1.7029 -0.2337 4.9148 22 6 2.5401 -0.6743 6.1319 23 16 4.2191 -0.9747 5.4711 24 8 5.1061 0.0170 5.9703 25 8 4.5415 -2.3514 5.6128 26 6 3.8357 -0.6181 3.7147 27 1 -0.3634 0.6000 0.8343 28 1 -0.3633 0.4225 -0.9368 29 1 -0.3633 -1.0227 0.1024 30 1 1.8934 -0.5137 -0.8900 31 1 3.1289 1.4430 -0.0487 32 1 1.6373 1.9702 -0.8647 33 1 1.7168 1.9422 0.9132 34 1 3.4660 -1.8265 0.1897 35 1 3.4282 -2.0449 1.9558 36 1 1.2411 -3.1980 1.7663 37 1 1.2789 -2.9795 0.0002 38 1 4.1109 -4.3984 -0.7798 39 1 3.1412 -5.8782 -0.5848 40 1 2.4141 -4.4277 -1.3168 41 1 5.6870 -6.5165 0.7694 42 1 0.6734 -0.5703 5.0369 43 1 1.7252 0.8527 4.8286 44 1 2.1325 -1.5900 6.5602 45 1 2.5645 0.1158 6.8825 46 1 4.0729 0.4171 3.4693 47 1 4.3671 -1.3047 3.0556 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717949563.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:00 Heat of formation + Delta-G solvation = -97.914533 kcal Electronic energy + Delta-G solvation = -28904.764141 eV Core-core repulsion = 25022.245855 eV Total energy + Delta-G solvation = -3882.518286 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.51344 -38.13266 -38.05478 -37.38398 -37.04708 -36.44522 -34.04339 -32.88921 -30.92687 -29.39510 -28.02045 -27.87893 -26.88535 -25.12804 -24.15482 -22.31641 -22.07915 -19.91277 -19.74627 -18.74550 -18.24331 -17.83078 -17.32849 -16.96385 -16.79963 -16.62640 -16.06591 -15.51163 -15.36189 -15.34354 -15.08821 -14.89963 -14.63376 -14.23615 -14.07712 -13.93253 -13.49360 -13.29667 -13.27624 -13.12769 -13.10956 -13.06212 -12.87403 -12.79196 -12.72243 -12.61803 -12.37490 -12.23029 -12.07777 -12.01568 -11.96915 -11.88902 -11.84430 -11.48657 -11.30006 -10.62815 -10.44178 -9.74947 -8.74608 -7.81621 -5.26598 -0.96728 1.40670 1.47564 1.52057 1.58048 1.65775 1.97575 2.54033 2.60774 3.00090 3.22672 3.35771 3.45215 3.55328 3.75212 3.86149 3.87062 4.01339 4.11708 4.16177 4.21746 4.38235 4.42568 4.55816 4.56292 4.69866 4.75219 4.79157 4.82232 4.89621 4.94142 4.95660 5.00129 5.03551 5.09434 5.25538 5.32341 5.40471 5.42306 5.67347 5.75202 5.79177 6.32773 6.45260 7.16666 7.18640 7.89353 8.30673 9.21762 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.008541 B = 0.006172 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3277.542882 B = 4535.327838 C = 7078.345493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.136 3.864 3 C -0.162 4.162 4 N -0.596 5.596 5 C 0.085 3.915 6 C 0.141 3.859 7 N -0.613 5.613 8 C 0.176 3.824 9 C -0.256 4.256 10 H 0.076 0.924 11 C -0.044 4.044 12 N -0.934 5.934 13 Si 0.948 3.052 14 H -0.285 1.285 15 H -0.299 1.299 16 H -0.269 1.269 17 C 0.536 3.464 18 O -0.552 6.552 19 C -0.120 4.120 20 H 0.119 0.881 21 C -0.092 4.092 22 C -0.560 4.560 23 S 2.384 3.616 24 O -0.974 6.974 25 O -0.975 6.975 26 C -0.580 4.580 27 H 0.060 0.940 28 H 0.079 0.921 29 H 0.049 0.951 30 H 0.093 0.907 31 H 0.050 0.950 32 H 0.080 0.920 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.082 0.918 36 H 0.048 0.952 37 H 0.057 0.943 38 H 0.005 0.995 39 H 0.020 0.980 40 H 0.028 0.972 41 H 0.246 0.754 42 H 0.111 0.889 43 H 0.103 0.897 44 H 0.158 0.842 45 H 0.170 0.830 46 H 0.158 0.842 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.575 14.726 3.113 17.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.033 3.967 3 C -0.220 4.220 4 N -0.327 5.327 5 C -0.040 4.040 6 C 0.014 3.986 7 N -0.336 5.336 8 C 0.031 3.969 9 C -0.386 4.386 10 H 0.093 0.907 11 C -0.240 4.240 12 N -0.581 5.581 13 Si 0.777 3.223 14 H -0.212 1.212 15 H -0.226 1.226 16 H -0.194 1.194 17 C 0.324 3.676 18 O -0.432 6.432 19 C -0.142 4.142 20 H 0.137 0.863 21 C -0.130 4.130 22 C -0.693 4.693 23 S 2.573 3.427 24 O -0.971 6.971 25 O -0.973 6.973 26 C -0.710 4.710 27 H 0.079 0.921 28 H 0.097 0.903 29 H 0.068 0.932 30 H 0.111 0.889 31 H 0.069 0.931 32 H 0.099 0.901 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.100 0.900 36 H 0.066 0.934 37 H 0.075 0.925 38 H 0.023 0.977 39 H 0.039 0.961 40 H 0.047 0.953 41 H 0.056 0.944 42 H 0.129 0.871 43 H 0.121 0.879 44 H 0.176 0.824 45 H 0.187 0.813 46 H 0.176 0.824 47 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -7.927 14.842 3.567 17.200 hybrid contribution 0.231 -1.018 0.004 1.044 sum -7.695 13.823 3.571 16.219 Atomic orbital electron populations 1.22125 0.94398 1.01981 1.03162 1.21209 0.95046 0.93505 0.86920 1.22133 1.00742 0.95598 1.03506 1.48169 1.52594 1.26168 1.05810 1.22649 0.94679 0.83442 1.03253 1.21276 0.92678 0.84614 1.00032 1.44115 1.61955 1.24355 1.03188 1.20589 0.95086 0.97261 0.83921 1.19512 1.08573 1.18326 0.92173 0.90653 1.25557 0.96284 1.02681 0.99458 1.70197 1.16180 1.39706 1.32030 0.85541 0.76424 0.79888 0.80440 1.21212 1.22631 1.19422 1.20031 0.80005 0.83361 0.84250 1.90607 1.38111 1.27912 1.86536 1.22127 0.92247 1.03963 0.95873 0.86261 1.21764 1.01215 1.03330 0.86731 1.30335 1.16988 1.13834 1.08176 1.09001 0.80090 0.74070 0.79580 1.93551 1.63867 1.61301 1.78347 1.93636 1.84244 1.34053 1.85327 1.30734 1.02490 1.13444 1.24298 0.92060 0.90265 0.93164 0.88875 0.93056 0.90133 0.91891 0.91284 0.89997 0.93405 0.92514 0.97657 0.96141 0.95318 0.94413 0.87078 0.87850 0.82444 0.81253 0.82430 0.84033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.36 9.06 71.98 0.65 -2.71 16 2 C 0.14 3.02 3.28 45.00 0.15 3.17 16 3 C -0.16 -3.34 9.13 71.98 0.66 -2.69 16 4 N -0.60 -15.19 2.42 -797.84 -1.93 -17.12 16 5 C 0.09 2.59 5.39 86.38 0.47 3.05 16 6 C 0.14 4.90 6.03 86.38 0.52 5.43 16 7 N -0.61 -27.84 2.93 -726.94 -2.13 -29.97 16 8 C 0.18 8.09 9.01 127.77 1.15 9.24 16 9 C -0.26 -13.10 9.69 84.03 0.81 -12.29 16 10 H 0.08 3.73 7.84 -2.91 -0.02 3.71 16 11 C -0.04 -2.41 5.13 84.86 0.44 -1.97 16 12 N -0.93 -53.28 10.50 21.65 0.23 -53.05 16 13 Si 0.95 45.02 29.57 68.60 2.03 47.05 16 14 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 15 H -0.30 -14.58 7.11 99.48 0.71 -13.88 16 16 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 17 C 0.54 13.57 6.39 87.66 0.56 14.13 16 18 O -0.55 -15.26 12.03 -3.03 -0.04 -15.30 16 19 C -0.12 -2.64 2.03 -10.54 -0.02 -2.66 16 20 H 0.12 2.79 7.65 -2.39 -0.02 2.77 16 21 C -0.09 -1.49 5.32 31.28 0.17 -1.32 16 22 C -0.56 -7.98 7.26 72.37 0.53 -7.45 16 23 S 2.38 56.94 6.11 -56.49 -0.34 56.59 16 24 O -0.97 -28.48 18.15 -127.49 -2.31 -30.79 16 25 O -0.98 -33.71 18.15 -127.49 -2.31 -36.02 16 26 C -0.58 -12.84 6.17 72.68 0.45 -12.39 16 27 H 0.06 1.49 6.38 -2.39 -0.02 1.47 16 28 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 30 H 0.09 1.96 7.86 -2.39 -0.02 1.94 16 31 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 33 H 0.06 1.51 6.06 -2.39 -0.01 1.50 16 34 H 0.07 2.18 8.04 -2.39 -0.02 2.16 16 35 H 0.08 2.64 4.03 -2.39 -0.01 2.63 16 36 H 0.05 1.63 8.03 -2.39 -0.02 1.61 16 37 H 0.06 1.80 7.87 -2.39 -0.02 1.78 16 38 H 0.01 0.26 7.50 -2.39 -0.02 0.24 16 39 H 0.02 1.03 7.03 -2.38 -0.02 1.01 16 40 H 0.03 1.10 7.85 -2.39 -0.02 1.08 16 41 H 0.25 13.89 8.31 -92.71 -0.77 13.12 16 42 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.10 1.60 7.58 -2.39 -0.02 1.58 16 44 H 0.16 1.84 8.14 -2.39 -0.02 1.82 16 45 H 0.17 1.53 8.14 -2.38 -0.02 1.51 16 46 H 0.16 2.87 8.10 -2.39 -0.02 2.85 16 47 H 0.14 3.54 6.02 -2.39 -0.01 3.53 16 Total: -1.00 -73.26 378.19 0.66 -72.60 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: 0.95 Total: 14.47 kcal Atomic # 6 Polarization: -14.98 SS G_CDS: 6.52 Total: -8.46 kcal Atomic # 7 Polarization: -96.30 SS G_CDS: -3.84 Total: -100.14 kcal Atomic # 8 Polarization: -77.45 SS G_CDS: -4.66 Total: -82.11 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Atomic # 16 Polarization: 56.94 SS G_CDS: -0.34 Total: 56.59 kcal Total: -73.26 0.66 -72.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717949563.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.317 kcal (2) G-P(sol) polarization free energy of solvation -73.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds