Wall clock time and date at job start Tue Mar 31 2020 16:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47434 * 2 1 4 4 N 1.46495 * 109.47194 * 179.97438 * 3 2 1 5 5 C 1.34770 * 120.00437 * 275.29353 * 4 3 2 6 6 O 1.21281 * 120.00266 * 185.20227 * 5 4 3 7 7 C 1.50701 * 120.00065 * 5.20172 * 5 4 3 8 8 C 1.52994 * 109.47342 * 180.02562 * 7 5 4 9 9 S 1.81399 * 109.47094 * 180.02562 * 8 7 5 10 10 C 1.81400 * 101.92259 * 179.97438 * 9 8 7 11 11 O 1.42101 * 108.57729 * 294.48318 * 9 8 7 12 12 O 1.42097 * 108.58067 * 65.51348 * 9 8 7 13 13 C 1.46504 * 119.99565 * 95.29016 * 4 3 2 14 14 H 1.09008 * 110.88726 * 190.38825 * 13 4 3 15 15 C 1.55157 * 111.00404 * 66.50992 * 13 4 3 16 16 C 1.54316 * 102.94271 * 277.38880 * 15 13 4 17 17 N 1.47018 * 107.27514 * 337.80621 * 16 15 13 18 18 C 1.36933 * 125.65314 * 178.91943 * 17 16 15 19 19 H 1.07998 * 119.99813 * 180.02562 * 18 17 16 20 20 C 1.38809 * 119.99788 * 0.02838 * 18 17 16 21 21 N 1.31616 * 120.00072 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99847 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47642 * 89.99702 * 22 20 18 24 24 H 1.48505 * 109.47168 * 209.99763 * 22 20 18 25 25 H 1.48507 * 109.46981 * 329.99332 * 22 20 18 26 26 C 1.47433 * 108.70080 * 358.93990 * 17 16 15 27 27 H 1.09006 * 109.47015 * 300.00262 * 1 2 3 28 28 H 1.08997 * 109.46931 * 60.00015 * 1 2 3 29 29 H 1.08994 * 109.47246 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47391 * 239.99800 * 2 1 3 31 31 H 1.09005 * 109.47176 * 119.99786 * 2 1 3 32 32 H 1.08997 * 109.47066 * 60.00076 * 3 2 1 33 33 H 1.08997 * 109.47049 * 299.99912 * 3 2 1 34 34 H 1.09001 * 109.47372 * 300.00640 * 7 5 4 35 35 H 1.09004 * 109.46692 * 60.00309 * 7 5 4 36 36 H 1.09001 * 109.47270 * 299.99946 * 8 7 5 37 37 H 1.08999 * 109.47251 * 59.99884 * 8 7 5 38 38 H 1.09008 * 109.47346 * 59.99666 * 10 9 8 39 39 H 1.08994 * 109.47615 * 179.97438 * 10 9 8 40 40 H 1.09005 * 109.47418 * 299.99845 * 10 9 8 41 41 H 1.09009 * 110.71970 * 35.75467 * 15 13 4 42 42 H 1.08995 * 110.72320 * 158.84439 * 15 13 4 43 43 H 1.08999 * 109.88534 * 97.22399 * 16 15 13 44 44 H 1.09005 * 109.88008 * 218.38617 * 16 15 13 45 45 H 0.97004 * 119.99915 * 180.02562 * 21 20 18 46 46 H 1.08999 * 110.36661 * 265.29159 * 26 17 16 47 47 H 1.09000 * 110.36884 * 142.96631 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.1785 1.3349 1.1630 6 8 5.3876 1.4295 1.1744 7 6 3.4292 1.0972 2.4488 8 6 4.4219 1.0158 3.6101 9 16 3.5200 0.7289 5.1576 10 6 4.8672 0.6680 6.3708 11 8 2.7155 1.8679 5.4305 12 8 2.9097 -0.5528 5.0949 13 6 4.2380 1.5592 -1.2625 14 1 5.2998 1.3612 -1.1154 15 6 4.0164 2.9529 -1.9073 16 6 2.6683 2.7846 -2.6394 17 7 2.4731 1.3457 -2.8693 18 6 1.3855 0.7745 -3.4742 19 1 1.3365 -0.2975 -3.5961 20 6 0.3462 1.5733 -3.9309 21 7 0.4058 2.8796 -3.7820 22 14 -1.1378 0.7939 -4.7555 23 1 -2.1636 0.4755 -3.7301 24 1 -1.7071 1.7411 -5.7476 25 1 -0.7225 -0.4543 -5.4446 26 6 3.6420 0.6196 -2.3403 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.6768 1.9563 0.8900 33 1 1.6768 1.9563 -0.8900 34 1 2.7346 1.9191 2.6219 35 1 2.8745 0.1615 2.3783 36 1 5.1168 0.1940 3.4372 37 1 4.9763 1.9517 3.6804 38 1 5.4087 1.6141 6.3603 39 1 4.4538 0.4974 7.3647 40 1 5.5490 -0.1436 6.1163 41 1 3.9455 3.7254 -1.1414 42 1 4.8151 3.1831 -2.6123 43 1 1.8596 3.1743 -2.0212 44 1 2.6960 3.3121 -3.5929 45 1 -0.3207 3.4378 -4.1008 46 1 4.3690 0.4421 -3.1328 47 1 3.3313 -0.3238 -1.8912 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753317772.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:29 Heat of formation + Delta-G solvation = -71.273764 kcal Electronic energy + Delta-G solvation = -28528.969134 eV Core-core repulsion = 24647.606079 eV Total energy + Delta-G solvation = -3881.363056 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -40.11631 -37.69865 -37.21462 -36.26899 -34.96412 -33.42075 -32.72798 -31.57681 -29.97581 -29.20663 -27.79062 -25.84285 -25.28363 -24.03849 -21.29098 -20.57601 -20.11750 -19.13423 -18.62052 -17.55839 -17.00169 -16.58383 -16.52201 -16.04245 -15.66913 -15.38933 -14.71143 -14.28677 -14.13501 -13.88150 -13.75601 -13.57252 -13.53295 -13.23906 -12.68116 -12.65702 -12.32359 -12.30198 -12.22183 -11.99423 -11.92713 -11.71256 -11.47941 -11.35411 -11.22113 -11.13850 -11.00165 -10.92982 -10.83969 -10.54039 -10.30761 -10.17544 -10.05608 -9.84481 -9.68590 -9.33119 -8.70088 -8.21551 -6.89422 -5.77529 -3.11014 -0.31503 2.44701 2.77682 3.15389 3.35602 3.42512 3.43546 3.47627 3.73341 4.28401 4.43641 4.43938 4.44540 4.68592 4.70773 5.13287 5.28032 5.30017 5.33682 5.42534 5.45982 5.47324 5.59268 5.60611 5.69329 5.78417 5.87965 6.00165 6.16151 6.23030 6.29894 6.37360 6.45099 6.50333 6.59212 6.69932 6.86424 6.89364 7.09523 7.49397 7.52001 7.74281 7.81626 8.16781 8.38364 9.15117 9.74832 10.40410 11.33674 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018756 B = 0.003375 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.478757 B = 8295.269930 C = 9160.110642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.133 4.133 3 C 0.086 3.914 4 N -0.582 5.582 5 C 0.520 3.480 6 O -0.554 6.554 7 C -0.135 4.135 8 C -0.592 4.592 9 S 2.420 3.580 10 C -0.656 4.656 11 O -0.938 6.938 12 O -0.938 6.938 13 C 0.123 3.877 14 H 0.097 0.903 15 C -0.156 4.156 16 C 0.174 3.826 17 N -0.600 5.600 18 C -0.222 4.222 19 H 0.076 0.924 20 C -0.004 4.004 21 N -0.921 5.921 22 Si 0.905 3.095 23 H -0.288 1.288 24 H -0.292 1.292 25 H -0.283 1.283 26 C 0.123 3.877 27 H 0.044 0.956 28 H 0.072 0.928 29 H 0.048 0.952 30 H 0.080 0.920 31 H 0.043 0.957 32 H 0.058 0.942 33 H 0.134 0.866 34 H 0.108 0.892 35 H 0.111 0.889 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.129 0.871 39 H 0.128 0.872 40 H 0.129 0.871 41 H 0.062 0.938 42 H 0.067 0.933 43 H 0.051 0.949 44 H 0.044 0.956 45 H 0.252 0.748 46 H 0.030 0.970 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.014 -3.003 16.461 18.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.171 4.171 3 C -0.036 4.036 4 N -0.313 5.313 5 C 0.307 3.693 6 O -0.434 6.434 7 C -0.176 4.176 8 C -0.721 4.721 9 S 2.602 3.398 10 C -0.805 4.805 11 O -0.935 6.935 12 O -0.935 6.935 13 C 0.019 3.981 14 H 0.114 0.886 15 C -0.195 4.195 16 C 0.050 3.950 17 N -0.327 5.327 18 C -0.350 4.350 19 H 0.094 0.906 20 C -0.200 4.200 21 N -0.568 5.568 22 Si 0.736 3.264 23 H -0.215 1.215 24 H -0.218 1.218 25 H -0.208 1.208 26 C -0.003 4.003 27 H 0.063 0.937 28 H 0.091 0.909 29 H 0.067 0.933 30 H 0.098 0.902 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.152 0.848 34 H 0.126 0.874 35 H 0.129 0.871 36 H 0.157 0.843 37 H 0.157 0.843 38 H 0.147 0.853 39 H 0.147 0.853 40 H 0.147 0.853 41 H 0.080 0.920 42 H 0.085 0.915 43 H 0.069 0.931 44 H 0.062 0.938 45 H 0.063 0.937 46 H 0.047 0.953 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 7.526 -2.965 16.493 18.370 hybrid contribution 0.046 -0.254 -0.598 0.651 sum 7.572 -3.218 15.896 17.899 Atomic orbital electron populations 1.21650 0.95215 1.01270 1.02323 1.21930 0.96531 0.96958 1.01683 1.22247 0.77844 0.98138 1.05323 1.47855 1.07602 1.70245 1.05551 1.20138 0.87618 0.76639 0.84922 1.90636 1.14144 1.51821 1.86775 1.21458 0.97963 1.05991 0.92175 1.30123 1.12273 1.13203 1.16479 1.07860 0.77869 0.75477 0.78587 1.30259 1.20415 1.11665 1.18166 1.93611 1.64358 1.51867 1.83704 1.93610 1.73027 1.40994 1.85885 1.22272 0.95898 0.97110 0.82838 0.88550 1.23270 1.00949 0.95812 0.99510 1.21224 0.90641 0.85376 0.97796 1.44527 1.17596 1.01615 1.69002 1.18948 0.94071 0.91463 1.30529 0.90580 1.24724 0.98542 0.95498 1.01285 1.69947 1.32725 1.02474 1.51683 0.86222 0.83046 0.78025 0.79097 1.21506 1.21820 1.20823 1.21950 0.90624 0.94731 0.93018 0.93699 0.90857 0.93297 0.90191 0.93788 0.92337 0.84790 0.87363 0.87112 0.84330 0.84322 0.85267 0.85314 0.85263 0.91960 0.91451 0.93122 0.93816 0.93722 0.95269 0.93338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.91 37.16 0.37 -1.95 16 2 C -0.13 -2.12 6.01 -26.73 -0.16 -2.28 16 3 C 0.09 1.44 4.32 -4.04 -0.02 1.42 16 4 N -0.58 -9.60 2.52 -163.67 -0.41 -10.01 16 5 C 0.52 8.04 7.63 -10.99 -0.08 7.96 16 6 O -0.55 -9.75 15.42 5.56 0.09 -9.66 16 7 C -0.14 -1.60 4.38 -27.89 -0.12 -1.72 16 8 C -0.59 -5.07 5.09 37.15 0.19 -4.88 16 9 S 2.42 19.39 5.36 -107.50 -0.58 18.81 16 10 C -0.66 -2.81 10.62 101.05 1.07 -1.74 16 11 O -0.94 -10.99 18.10 -57.83 -1.05 -12.03 16 12 O -0.94 -10.98 18.10 -57.83 -1.05 -12.02 16 13 C 0.12 2.16 3.61 -65.78 -0.24 1.93 16 14 H 0.10 1.68 7.12 -51.92 -0.37 1.31 16 15 C -0.16 -2.84 6.56 -24.90 -0.16 -3.00 16 16 C 0.17 3.85 4.30 -3.07 -0.01 3.84 16 17 N -0.60 -13.56 2.19 -170.07 -0.37 -13.93 16 18 C -0.22 -5.54 10.28 -15.06 -0.15 -5.69 16 19 H 0.08 1.88 7.83 -52.49 -0.41 1.47 16 20 C 0.00 -0.11 5.49 -17.43 -0.10 -0.20 16 21 N -0.92 -24.95 10.31 55.49 0.57 -24.38 16 22 Si 0.91 20.91 29.55 -169.99 -5.02 15.89 16 23 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 C 0.12 2.38 6.06 -2.52 -0.02 2.36 16 27 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.08 1.43 5.64 -51.93 -0.29 1.14 16 31 H 0.04 0.62 6.30 -51.93 -0.33 0.29 16 32 H 0.06 0.86 6.71 -51.93 -0.35 0.51 16 33 H 0.13 2.71 3.73 -51.93 -0.19 2.52 16 34 H 0.11 1.17 7.28 -51.93 -0.38 0.79 16 35 H 0.11 1.23 6.34 -51.93 -0.33 0.90 16 36 H 0.14 1.02 8.10 -51.92 -0.42 0.60 16 37 H 0.14 1.03 8.10 -51.92 -0.42 0.61 16 38 H 0.13 0.35 8.14 -51.92 -0.42 -0.07 16 39 H 0.13 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.13 0.35 8.14 -51.92 -0.42 -0.07 16 41 H 0.06 1.09 8.14 -51.92 -0.42 0.67 16 42 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.05 1.22 5.82 -51.93 -0.30 0.92 16 44 H 0.04 1.10 7.51 -51.93 -0.39 0.71 16 45 H 0.25 6.78 8.31 -40.82 -0.34 6.45 16 46 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.05 0.92 6.01 -51.93 -0.31 0.61 16 LS Contribution 375.21 15.07 5.65 5.65 Total: -1.00 -33.70 375.21 -9.03 -42.74 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -7.43 Total: 2.91 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: 0.57 Total: -3.96 kcal Atomic # 7 Polarization: -48.11 SS G_CDS: -0.21 Total: -48.32 kcal Atomic # 8 Polarization: -31.71 SS G_CDS: -2.01 Total: -33.71 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: 19.39 SS G_CDS: -0.58 Total: 18.81 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.70 -9.03 -42.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753317772.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.539 kcal (2) G-P(sol) polarization free energy of solvation -33.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds