Wall clock time and date at job start Tue Mar 31 2020 16:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47434 * 2 1 4 4 N 1.46495 * 109.47194 * 179.97438 * 3 2 1 5 5 C 1.34770 * 120.00437 * 275.29353 * 4 3 2 6 6 O 1.21281 * 120.00266 * 185.20227 * 5 4 3 7 7 C 1.50701 * 120.00065 * 5.20172 * 5 4 3 8 8 C 1.52994 * 109.47342 * 180.02562 * 7 5 4 9 9 S 1.81399 * 109.47094 * 180.02562 * 8 7 5 10 10 C 1.81400 * 101.92259 * 179.97438 * 9 8 7 11 11 O 1.42101 * 108.57729 * 294.48318 * 9 8 7 12 12 O 1.42097 * 108.58067 * 65.51348 * 9 8 7 13 13 C 1.46504 * 119.99565 * 95.29016 * 4 3 2 14 14 H 1.09008 * 110.88726 * 190.38825 * 13 4 3 15 15 C 1.55157 * 111.00404 * 66.50992 * 13 4 3 16 16 C 1.54316 * 102.94271 * 277.38880 * 15 13 4 17 17 N 1.47018 * 107.27514 * 337.80621 * 16 15 13 18 18 C 1.36933 * 125.65314 * 178.91943 * 17 16 15 19 19 H 1.07998 * 119.99813 * 180.02562 * 18 17 16 20 20 C 1.38809 * 119.99788 * 0.02838 * 18 17 16 21 21 N 1.31616 * 120.00072 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99847 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47642 * 89.99702 * 22 20 18 24 24 H 1.48505 * 109.47168 * 209.99763 * 22 20 18 25 25 H 1.48507 * 109.46981 * 329.99332 * 22 20 18 26 26 C 1.47433 * 108.70080 * 358.93990 * 17 16 15 27 27 H 1.09006 * 109.47015 * 300.00262 * 1 2 3 28 28 H 1.08997 * 109.46931 * 60.00015 * 1 2 3 29 29 H 1.08994 * 109.47246 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47391 * 239.99800 * 2 1 3 31 31 H 1.09005 * 109.47176 * 119.99786 * 2 1 3 32 32 H 1.08997 * 109.47066 * 60.00076 * 3 2 1 33 33 H 1.08997 * 109.47049 * 299.99912 * 3 2 1 34 34 H 1.09001 * 109.47372 * 300.00640 * 7 5 4 35 35 H 1.09004 * 109.46692 * 60.00309 * 7 5 4 36 36 H 1.09001 * 109.47270 * 299.99946 * 8 7 5 37 37 H 1.08999 * 109.47251 * 59.99884 * 8 7 5 38 38 H 1.09008 * 109.47346 * 59.99666 * 10 9 8 39 39 H 1.08994 * 109.47615 * 179.97438 * 10 9 8 40 40 H 1.09005 * 109.47418 * 299.99845 * 10 9 8 41 41 H 1.09009 * 110.71970 * 35.75467 * 15 13 4 42 42 H 1.08995 * 110.72320 * 158.84439 * 15 13 4 43 43 H 1.08999 * 109.88534 * 97.22399 * 16 15 13 44 44 H 1.09005 * 109.88008 * 218.38617 * 16 15 13 45 45 H 0.97004 * 119.99915 * 180.02562 * 21 20 18 46 46 H 1.08999 * 110.36661 * 265.29159 * 26 17 16 47 47 H 1.09000 * 110.36884 * 142.96631 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.1785 1.3349 1.1630 6 8 5.3876 1.4295 1.1744 7 6 3.4292 1.0972 2.4488 8 6 4.4219 1.0158 3.6101 9 16 3.5200 0.7289 5.1576 10 6 4.8672 0.6680 6.3708 11 8 2.7155 1.8679 5.4305 12 8 2.9097 -0.5528 5.0949 13 6 4.2380 1.5592 -1.2625 14 1 5.2998 1.3612 -1.1154 15 6 4.0164 2.9529 -1.9073 16 6 2.6683 2.7846 -2.6394 17 7 2.4731 1.3457 -2.8693 18 6 1.3855 0.7745 -3.4742 19 1 1.3365 -0.2975 -3.5961 20 6 0.3462 1.5733 -3.9309 21 7 0.4058 2.8796 -3.7820 22 14 -1.1378 0.7939 -4.7555 23 1 -2.1636 0.4755 -3.7301 24 1 -1.7071 1.7411 -5.7476 25 1 -0.7225 -0.4543 -5.4446 26 6 3.6420 0.6196 -2.3403 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.6768 1.9563 0.8900 33 1 1.6768 1.9563 -0.8900 34 1 2.7346 1.9191 2.6219 35 1 2.8745 0.1615 2.3783 36 1 5.1168 0.1940 3.4372 37 1 4.9763 1.9517 3.6804 38 1 5.4087 1.6141 6.3603 39 1 4.4538 0.4974 7.3647 40 1 5.5490 -0.1436 6.1163 41 1 3.9455 3.7254 -1.1414 42 1 4.8151 3.1831 -2.6123 43 1 1.8596 3.1743 -2.0212 44 1 2.6960 3.3121 -3.5929 45 1 -0.3207 3.4378 -4.1008 46 1 4.3690 0.4421 -3.1328 47 1 3.3313 -0.3238 -1.8912 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753317772.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:28 Heat of formation + Delta-G solvation = -94.361938 kcal Electronic energy + Delta-G solvation = -28529.970313 eV Core-core repulsion = 24647.606079 eV Total energy + Delta-G solvation = -3882.364234 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -41.44606 -39.17595 -37.95621 -37.01267 -36.40982 -34.81530 -33.86991 -33.16038 -30.93958 -30.34814 -29.36796 -27.20343 -26.58754 -25.54787 -22.57296 -21.94483 -21.91119 -19.93200 -19.76901 -18.84510 -18.64572 -17.61803 -17.28515 -16.83683 -16.71621 -16.60311 -16.41675 -15.67217 -15.61367 -15.36693 -14.93606 -14.56939 -14.03635 -13.97744 -13.91765 -13.86513 -13.71577 -13.54944 -13.42418 -13.08383 -12.99110 -12.91391 -12.85578 -12.83111 -12.61427 -12.52339 -12.41854 -12.07607 -12.01439 -11.96916 -11.79303 -11.76412 -11.56144 -11.46948 -11.20772 -10.69928 -10.61713 -9.60715 -8.78966 -7.76857 -5.09773 -0.90660 1.49316 1.51024 1.56498 1.57436 1.89522 1.99708 2.54046 2.77021 3.16732 3.42402 3.44340 3.60854 3.72328 3.83597 3.92346 4.04298 4.06277 4.16599 4.24035 4.29838 4.31875 4.41927 4.48146 4.58107 4.66464 4.71811 4.74898 4.85461 4.91921 4.97924 5.00257 5.03272 5.06965 5.09688 5.28482 5.47254 5.52838 5.55117 5.67841 5.73277 5.85229 6.24598 6.51079 7.13055 7.17851 7.83653 8.48402 9.33100 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018756 B = 0.003375 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.478757 B = 8295.269930 C = 9160.110642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.127 4.127 3 C 0.092 3.908 4 N -0.587 5.587 5 C 0.520 3.480 6 O -0.573 6.573 7 C -0.143 4.143 8 C -0.591 4.591 9 S 2.432 3.568 10 C -0.634 4.634 11 O -0.982 6.982 12 O -0.980 6.980 13 C 0.133 3.867 14 H 0.107 0.893 15 C -0.143 4.143 16 C 0.188 3.812 17 N -0.609 5.609 18 C -0.216 4.216 19 H 0.077 0.923 20 C -0.053 4.053 21 N -0.946 5.946 22 Si 0.958 3.042 23 H -0.286 1.286 24 H -0.302 1.302 25 H -0.275 1.275 26 C 0.124 3.876 27 H 0.062 0.938 28 H 0.036 0.964 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.098 0.902 34 H 0.117 0.883 35 H 0.118 0.882 36 H 0.153 0.847 37 H 0.152 0.848 38 H 0.152 0.848 39 H 0.141 0.859 40 H 0.153 0.847 41 H 0.070 0.930 42 H 0.080 0.920 43 H 0.027 0.973 44 H 0.005 0.995 45 H 0.244 0.756 46 H 0.035 0.965 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.658 -4.084 18.834 21.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.165 4.165 3 C -0.031 4.031 4 N -0.317 5.317 5 C 0.309 3.691 6 O -0.454 6.454 7 C -0.183 4.183 8 C -0.720 4.720 9 S 2.619 3.381 10 C -0.788 4.788 11 O -0.979 6.979 12 O -0.978 6.978 13 C 0.028 3.972 14 H 0.125 0.875 15 C -0.182 4.182 16 C 0.063 3.937 17 N -0.335 5.335 18 C -0.345 4.345 19 H 0.095 0.905 20 C -0.246 4.246 21 N -0.596 5.596 22 Si 0.789 3.211 23 H -0.213 1.213 24 H -0.230 1.230 25 H -0.201 1.201 26 C -0.002 4.002 27 H 0.082 0.918 28 H 0.056 0.944 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.116 0.884 34 H 0.135 0.865 35 H 0.136 0.864 36 H 0.171 0.829 37 H 0.170 0.830 38 H 0.171 0.829 39 H 0.159 0.841 40 H 0.171 0.829 41 H 0.088 0.912 42 H 0.099 0.901 43 H 0.045 0.955 44 H 0.023 0.977 45 H 0.053 0.947 46 H 0.052 0.948 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 9.158 -4.072 18.852 21.351 hybrid contribution -0.358 0.052 -1.274 1.324 sum 8.800 -4.020 17.579 20.065 Atomic orbital electron populations 1.21595 0.95194 1.01804 1.01414 1.21861 0.96474 0.96469 1.01727 1.22091 0.78023 0.98399 1.04562 1.47884 1.07436 1.70736 1.05680 1.20691 0.87521 0.75512 0.85406 1.90622 1.15091 1.52575 1.87118 1.21570 0.98747 1.06688 0.91326 1.30151 1.11885 1.14625 1.15346 1.07253 0.78499 0.73594 0.78798 1.30066 1.18353 1.14087 1.16256 1.93556 1.66983 1.53034 1.84307 1.93555 1.75179 1.42408 1.86624 1.22104 0.96321 0.95708 0.83029 0.87541 1.23134 0.98816 0.96702 0.99572 1.20921 0.92189 0.84779 0.95802 1.44629 1.17997 1.02175 1.68741 1.19154 0.94563 0.91513 1.29248 0.90505 1.25310 1.00790 0.95879 1.02643 1.70133 1.32951 1.03417 1.53073 0.85374 0.80604 0.77187 0.77968 1.21279 1.22952 1.20058 1.22045 0.89530 0.95025 0.93625 0.91850 0.94441 0.92044 0.92383 0.91323 0.90276 0.88364 0.86510 0.86387 0.82905 0.82965 0.82935 0.84102 0.82890 0.91166 0.90119 0.95523 0.97667 0.94696 0.94760 0.92933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.42 9.91 71.98 0.71 -3.71 16 2 C -0.13 -3.94 6.01 30.60 0.18 -3.76 16 3 C 0.09 3.00 4.32 86.38 0.37 3.37 16 4 N -0.59 -18.62 2.52 -790.13 -1.99 -20.61 16 5 C 0.52 15.00 7.63 87.66 0.67 15.67 16 6 O -0.57 -18.79 15.42 -3.03 -0.05 -18.83 16 7 C -0.14 -3.06 4.38 29.85 0.13 -2.93 16 8 C -0.59 -8.47 5.09 71.98 0.37 -8.11 16 9 S 2.43 33.59 5.36 -56.49 -0.30 33.29 16 10 C -0.63 -2.74 10.62 113.37 1.20 -1.54 16 11 O -0.98 -21.69 18.10 -127.37 -2.31 -23.99 16 12 O -0.98 -21.46 18.10 -127.37 -2.30 -23.76 16 13 C 0.13 4.53 3.61 46.38 0.17 4.70 16 14 H 0.11 3.49 7.12 -2.38 -0.02 3.47 16 15 C -0.14 -5.15 6.56 31.78 0.21 -4.94 16 16 C 0.19 8.59 4.30 86.73 0.37 8.96 16 17 N -0.61 -28.01 2.19 -691.99 -1.51 -29.52 16 18 C -0.22 -10.97 10.28 84.03 0.86 -10.10 16 19 H 0.08 3.83 7.83 -2.91 -0.02 3.80 16 20 C -0.05 -2.80 5.49 84.86 0.47 -2.34 16 21 N -0.95 -53.35 10.31 21.65 0.22 -53.12 16 22 Si 0.96 43.92 29.55 68.60 2.03 45.95 16 23 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 24 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 25 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 26 C 0.12 4.71 6.06 86.85 0.53 5.23 16 27 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 28 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.06 2.06 5.64 -2.39 -0.01 2.04 16 31 H 0.07 1.79 6.30 -2.38 -0.02 1.77 16 32 H 0.08 2.23 6.71 -2.39 -0.02 2.22 16 33 H 0.10 4.06 3.73 -2.39 -0.01 4.05 16 34 H 0.12 2.29 7.28 -2.39 -0.02 2.28 16 35 H 0.12 2.34 6.34 -2.39 -0.02 2.33 16 36 H 0.15 1.75 8.10 -2.39 -0.02 1.73 16 37 H 0.15 1.77 8.10 -2.39 -0.02 1.75 16 38 H 0.15 0.08 8.14 -2.39 -0.02 0.06 16 39 H 0.14 0.44 8.14 -2.39 -0.02 0.42 16 40 H 0.15 0.06 8.14 -2.39 -0.02 0.04 16 41 H 0.07 2.42 8.14 -2.38 -0.02 2.40 16 42 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 43 H 0.03 1.35 5.82 -2.39 -0.01 1.34 16 44 H 0.01 0.27 7.51 -2.38 -0.02 0.25 16 45 H 0.24 13.66 8.31 -92.71 -0.77 12.89 16 46 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 47 H 0.05 1.97 6.01 -2.39 -0.01 1.96 16 Total: -1.00 -74.77 375.21 0.99 -73.78 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: 0.96 Total: 16.33 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: 6.25 Total: 0.51 kcal Atomic # 7 Polarization: -99.97 SS G_CDS: -3.29 Total: -103.26 kcal Atomic # 8 Polarization: -61.94 SS G_CDS: -4.66 Total: -66.59 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 16 Polarization: 33.59 SS G_CDS: -0.30 Total: 33.29 kcal Total: -74.77 0.99 -73.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753317772.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.587 kcal (2) G-P(sol) polarization free energy of solvation -74.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds