Wall clock time and date at job start Tue Mar 31 2020 18:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 109.46968 * 2 1 4 4 C 1.52998 * 109.47171 * 239.99978 * 2 1 3 5 5 N 1.46508 * 109.46700 * 185.00264 * 4 2 1 6 6 C 1.46504 * 119.99572 * 269.99715 * 5 4 2 7 7 C 1.36931 * 119.99928 * 90.00283 * 5 4 2 8 8 H 1.07996 * 120.00147 * 335.68045 * 7 5 4 9 9 C 1.38809 * 120.00038 * 155.68996 * 7 5 4 10 10 N 1.31616 * 120.00309 * 156.74000 * 9 7 5 11 11 Si 1.86801 * 119.99651 * 336.46167 * 9 7 5 12 12 H 1.48503 * 109.47358 * 84.67615 * 11 9 7 13 13 H 1.48511 * 109.47049 * 204.67214 * 11 9 7 14 14 H 1.48496 * 109.47284 * 324.67055 * 11 9 7 15 15 N 1.46501 * 109.46911 * 119.99538 * 2 1 3 16 16 C 1.34778 * 120.00244 * 275.00053 * 15 2 1 17 17 O 1.21278 * 120.00146 * 0.02562 * 16 15 2 18 18 C 1.50703 * 119.99685 * 179.97438 * 16 15 2 19 19 C 1.53005 * 109.46635 * 180.02562 * 18 16 15 20 20 H 1.09000 * 109.38754 * 304.79094 * 19 18 16 21 21 C 1.52587 * 109.38203 * 184.99828 * 19 18 16 22 22 C 1.52592 * 110.63976 * 169.85721 * 21 19 18 23 23 C 1.53029 * 109.98525 * 69.98972 * 22 21 19 24 24 S 1.81670 * 108.99876 * 296.34979 * 23 22 21 25 25 O 1.42105 * 108.66157 * 168.63093 * 24 23 22 26 26 O 1.42097 * 108.66067 * 299.96768 * 24 23 22 27 27 C 1.53037 * 109.38543 * 64.47856 * 19 18 16 28 28 H 1.09003 * 109.46688 * 60.00378 * 1 2 3 29 29 H 1.09005 * 109.46968 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47345 * 300.00490 * 1 2 3 31 31 H 1.08999 * 109.47322 * 65.00007 * 4 2 1 32 32 H 1.09006 * 109.47035 * 304.99561 * 4 2 1 33 33 H 1.09003 * 109.46591 * 268.07685 * 6 5 4 34 34 H 1.08995 * 109.46974 * 28.07746 * 6 5 4 35 35 H 1.08994 * 109.46469 * 148.08529 * 6 5 4 36 36 H 0.97006 * 120.00088 * 179.97438 * 10 9 7 37 37 H 0.97006 * 119.99977 * 95.00319 * 15 2 1 38 38 H 1.08993 * 109.47222 * 299.99934 * 18 16 15 39 39 H 1.08996 * 109.47007 * 60.00684 * 18 16 15 40 40 H 1.08994 * 109.24845 * 290.15660 * 21 19 18 41 41 H 1.09000 * 109.24329 * 49.56074 * 21 19 18 42 42 H 1.09006 * 109.38443 * 190.14676 * 22 21 19 43 43 H 1.09002 * 109.38599 * 309.82921 * 22 21 19 44 44 H 1.08999 * 109.55043 * 56.20750 * 23 22 21 45 45 H 1.09002 * 109.54980 * 176.39763 * 23 22 21 46 46 H 1.09002 * 109.55111 * 303.66304 * 27 19 18 47 47 H 1.09002 * 109.55257 * 63.94354 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 3.5002 -0.8264 -1.1904 6 6 4.3344 0.2341 -1.7611 7 6 4.0850 -1.9158 -0.6021 8 1 3.5445 -2.4836 0.1407 9 6 5.3726 -2.2905 -0.9605 10 7 6.1058 -3.0025 -0.1312 11 14 6.0621 -1.7906 -2.6231 12 1 6.6312 -0.4220 -2.5318 13 1 7.1278 -2.7440 -3.0240 14 1 4.9757 -1.8084 -3.6352 15 7 2.0183 -0.6905 1.1962 16 6 2.1470 -0.0181 2.3572 17 8 1.8582 1.1585 2.4118 18 6 2.6488 -0.7287 3.5878 19 6 2.6997 0.2544 4.7591 20 1 3.3047 1.1174 4.4811 21 6 3.3239 -0.4327 5.9702 22 6 3.6191 0.5816 7.0713 23 6 2.3100 1.0848 7.6835 24 16 1.3629 1.9690 6.4100 25 8 0.0493 2.2013 6.8996 26 8 2.1381 3.0660 5.9466 27 6 1.2806 0.7185 5.0949 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.7517 -0.1583 -2.1370 32 1 1.6055 -1.7199 -1.2951 33 1 4.5709 -0.0078 -2.7973 34 1 3.7954 1.1807 -1.7228 35 1 5.2576 0.3181 -1.1878 36 1 7.0055 -3.2646 -0.3818 37 1 2.2491 -1.6317 1.1528 38 1 1.9759 -1.5504 3.8326 39 1 3.6479 -1.1212 3.3987 40 1 2.6342 -1.1858 6.3511 41 1 4.2530 -0.9169 5.6693 42 1 4.2228 0.1090 7.8461 43 1 4.1686 1.4234 6.6499 44 1 1.7287 0.2380 8.0482 45 1 2.5299 1.7596 8.5108 46 1 0.8191 1.1520 4.2077 47 1 0.6900 -0.1317 5.4363 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754329981.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:40 Heat of formation + Delta-G solvation = -94.874030 kcal Electronic energy + Delta-G solvation = -28029.689115 eV Core-core repulsion = 24147.302675 eV Total energy + Delta-G solvation = -3882.386440 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 3.06 seconds Orbital eigenvalues (eV) -39.72440 -37.76884 -36.92192 -36.41285 -36.03750 -34.19449 -32.91699 -31.72279 -30.67150 -28.15722 -27.50169 -26.83040 -25.73401 -23.28785 -22.01991 -20.91343 -20.12186 -19.83015 -18.91433 -17.12801 -16.84423 -16.60383 -16.35905 -15.80158 -15.72005 -15.36247 -15.29434 -14.66327 -14.46972 -14.10380 -13.89525 -13.53701 -13.30192 -13.14951 -12.82192 -12.69848 -12.53635 -12.46927 -12.14304 -12.11951 -12.04713 -11.96589 -11.73691 -11.54550 -11.49780 -11.38635 -11.14079 -10.92681 -10.90856 -10.64763 -10.49206 -10.33959 -10.20966 -10.15285 -9.58758 -9.28054 -8.67767 -8.46633 -7.08682 -6.07530 -3.40336 -0.03429 2.62087 3.10203 3.31209 3.45121 3.47579 3.58990 3.67746 3.81374 4.34763 4.35554 4.47536 4.57934 4.58595 4.72155 4.87991 4.95499 5.06197 5.27606 5.27979 5.31070 5.37392 5.43328 5.51089 5.59935 5.68222 5.72607 5.75957 5.77548 5.86706 5.95859 6.03562 6.07121 6.13708 6.21686 6.23962 6.36377 6.46540 6.65749 6.73826 7.08480 7.80012 8.08034 8.18038 8.72215 8.84696 9.62371 9.96835 11.07872 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017391 B = 0.003230 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.611718 B = 8667.806721 C = 9597.488024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.118 3.882 3 H 0.078 0.922 4 C 0.140 3.860 5 N -0.609 5.609 6 C 0.108 3.892 7 C -0.265 4.265 8 H 0.084 0.916 9 C 0.028 3.972 10 N -0.903 5.903 11 Si 0.890 3.110 12 H -0.287 1.287 13 H -0.307 1.307 14 H -0.280 1.280 15 N -0.695 5.695 16 C 0.513 3.487 17 O -0.560 6.560 18 C -0.133 4.133 19 C -0.059 4.059 20 H 0.100 0.900 21 C -0.139 4.139 22 C -0.109 4.109 23 C -0.608 4.608 24 S 2.415 3.585 25 O -0.952 6.952 26 O -0.933 6.933 27 C -0.598 4.598 28 H 0.060 0.940 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.007 0.993 34 H 0.035 0.965 35 H 0.055 0.945 36 H 0.263 0.737 37 H 0.406 0.594 38 H 0.092 0.908 39 H 0.108 0.892 40 H 0.075 0.925 41 H 0.091 0.909 42 H 0.086 0.914 43 H 0.085 0.915 44 H 0.130 0.870 45 H 0.129 0.871 46 H 0.154 0.846 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.451 2.881 12.519 15.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.010 3.990 3 H 0.096 0.904 4 C 0.013 3.987 5 N -0.332 5.332 6 C -0.037 4.037 7 C -0.393 4.393 8 H 0.102 0.898 9 C -0.171 4.171 10 N -0.546 5.546 11 Si 0.721 3.279 12 H -0.214 1.214 13 H -0.235 1.235 14 H -0.206 1.206 15 N -0.346 5.346 16 C 0.300 3.700 17 O -0.440 6.440 18 C -0.174 4.174 19 C -0.078 4.078 20 H 0.118 0.882 21 C -0.176 4.176 22 C -0.147 4.147 23 C -0.736 4.736 24 S 2.598 3.402 25 O -0.950 6.950 26 O -0.931 6.931 27 C -0.728 4.728 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.024 0.976 34 H 0.053 0.947 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.243 0.757 38 H 0.110 0.890 39 H 0.126 0.874 40 H 0.094 0.906 41 H 0.109 0.891 42 H 0.104 0.896 43 H 0.104 0.896 44 H 0.149 0.851 45 H 0.148 0.852 46 H 0.172 0.828 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -8.843 4.481 12.596 16.029 hybrid contribution 0.888 -1.115 -0.988 1.735 sum -7.956 3.366 11.607 14.469 Atomic orbital electron populations 1.22125 0.96386 1.01525 1.01745 1.21735 0.92339 0.98236 0.86657 0.90404 1.21133 0.84928 0.98956 0.93696 1.44099 0.99934 1.20551 1.68638 1.21337 0.95876 0.90488 0.96026 1.18717 0.98677 1.05365 1.16501 0.89831 1.25158 0.96654 0.97504 0.97831 1.69849 1.09318 1.40930 1.34481 0.86941 0.77670 0.76554 0.86687 1.21439 1.23501 1.20623 1.45991 1.65211 1.14603 1.08781 1.20483 0.77372 0.87233 0.84952 1.90599 1.51863 1.16172 1.85404 1.21675 1.04466 0.98764 0.92477 1.20623 0.92497 0.99872 0.94826 0.88173 1.21819 1.03091 0.98477 0.94210 1.21259 0.94439 1.00382 0.98621 1.30280 1.11352 1.14555 1.17446 1.08075 0.75678 0.77952 0.78516 1.93571 1.36807 1.84732 1.79849 1.93595 1.71667 1.47990 1.79802 1.30388 1.05662 1.17372 1.19368 0.92150 0.92791 0.92757 0.92833 0.92171 0.97553 0.94652 0.92692 0.92722 0.75665 0.88966 0.87417 0.90642 0.89083 0.89577 0.89599 0.85148 0.85227 0.82796 0.85521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 46. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.13 9.48 37.16 0.35 -1.77 16 2 C 0.12 1.92 2.88 -67.93 -0.20 1.72 16 3 H 0.08 1.44 7.58 -51.93 -0.39 1.04 16 4 C 0.14 2.45 5.31 -4.04 -0.02 2.43 16 5 N -0.61 -13.27 2.60 -181.12 -0.47 -13.74 16 6 C 0.11 2.30 8.35 59.85 0.50 2.80 16 7 C -0.26 -6.58 9.25 -15.06 -0.14 -6.72 16 8 H 0.08 2.09 6.34 -52.49 -0.33 1.76 16 9 C 0.03 0.76 5.19 -17.43 -0.09 0.67 16 10 N -0.90 -25.65 13.97 55.49 0.78 -24.88 16 11 Si 0.89 21.79 24.03 -169.99 -4.09 17.71 16 12 H -0.29 -6.87 6.48 56.52 0.37 -6.51 16 13 H -0.31 -7.69 7.11 56.52 0.40 -7.29 16 14 H -0.28 -6.85 6.94 56.52 0.39 -6.46 16 15 N -0.70 -11.35 4.49 -53.80 -0.24 -11.59 16 16 C 0.51 8.26 7.48 -10.98 -0.08 8.18 16 17 O -0.56 -10.48 13.60 5.56 0.08 -10.40 16 18 C -0.13 -1.62 5.16 -27.88 -0.14 -1.76 16 19 C -0.06 -0.63 1.67 -90.81 -0.15 -0.79 16 20 H 0.10 1.28 7.82 -51.93 -0.41 0.87 16 21 C -0.14 -1.07 4.93 -27.15 -0.13 -1.20 16 22 C -0.11 -0.79 5.73 -26.92 -0.15 -0.94 16 23 C -0.61 -4.23 6.35 37.17 0.24 -3.99 16 24 S 2.41 26.36 5.31 -107.50 -0.57 25.79 16 25 O -0.95 -13.33 18.10 -57.81 -1.05 -14.38 16 26 O -0.93 -14.04 17.93 -57.81 -1.04 -15.07 16 27 C -0.60 -6.23 5.39 37.18 0.20 -6.03 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.05 0.85 8.07 -51.93 -0.42 0.43 16 32 H 0.06 1.03 8.04 -51.93 -0.42 0.61 16 33 H 0.01 0.15 5.19 -51.93 -0.27 -0.12 16 34 H 0.03 0.66 8.06 -51.93 -0.42 0.24 16 35 H 0.05 1.27 6.52 -51.93 -0.34 0.93 16 36 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 37 H 0.41 6.65 6.47 -40.82 -0.26 6.39 16 38 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.11 1.36 8.10 -51.93 -0.42 0.94 16 40 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 41 H 0.09 0.68 8.06 -51.93 -0.42 0.27 16 42 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.09 0.69 8.01 -51.93 -0.42 0.27 16 44 H 0.13 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.13 0.75 8.14 -51.93 -0.42 0.32 16 46 H 0.15 1.99 5.85 -51.93 -0.30 1.68 16 47 H 0.13 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 373.39 15.07 5.63 5.63 Total: -1.00 -35.36 373.39 -8.60 -43.96 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -7.80 Total: 4.38 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: 0.18 Total: -7.40 kcal Atomic # 7 Polarization: -50.26 SS G_CDS: 0.06 Total: -50.20 kcal Atomic # 8 Polarization: -37.85 SS G_CDS: -2.01 Total: -39.86 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.09 Total: 17.71 kcal Atomic # 16 Polarization: 26.36 SS G_CDS: -0.57 Total: 25.79 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.36 -8.60 -43.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754329981.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.915 kcal (2) G-P(sol) polarization free energy of solvation -35.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.06 seconds