Wall clock time and date at job start Tue Mar 31 2020 18:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.46933 * 2 1 4 4 C 1.52994 * 109.47001 * 120.00622 * 2 1 3 5 5 N 1.46500 * 109.46906 * 174.99618 * 4 2 1 6 6 C 1.46493 * 120.00179 * 269.99553 * 5 4 2 7 7 C 1.36934 * 119.99874 * 90.00190 * 5 4 2 8 8 H 1.08000 * 120.00021 * 337.19715 * 7 5 4 9 9 C 1.38816 * 120.00424 * 157.20929 * 7 5 4 10 10 N 1.31625 * 119.99390 * 347.67966 * 9 7 5 11 11 Si 1.86798 * 120.00474 * 167.68181 * 9 7 5 12 12 H 1.48497 * 109.47206 * 179.97438 * 11 9 7 13 13 H 1.48495 * 109.47066 * 299.99714 * 11 9 7 14 14 H 1.48507 * 109.46979 * 59.99888 * 11 9 7 15 15 N 1.46507 * 109.46497 * 240.00382 * 2 1 3 16 16 C 1.34776 * 119.99834 * 85.00233 * 15 2 1 17 17 O 1.21277 * 120.00262 * 359.97438 * 16 15 2 18 18 C 1.50703 * 119.99322 * 179.97438 * 16 15 2 19 19 C 1.53001 * 109.46664 * 180.02562 * 18 16 15 20 20 H 1.09000 * 109.38878 * 55.20846 * 19 18 16 21 21 C 1.52588 * 109.38522 * 175.00046 * 19 18 16 22 22 C 1.52595 * 110.64447 * 190.14170 * 21 19 18 23 23 C 1.53035 * 109.98737 * 290.01736 * 22 21 19 24 24 S 1.81675 * 109.00108 * 63.64302 * 23 22 21 25 25 O 1.42102 * 108.66020 * 60.03160 * 24 23 22 26 26 O 1.42094 * 108.66216 * 191.27578 * 24 23 22 27 27 C 1.53038 * 109.38473 * 295.52628 * 19 18 16 28 28 H 1.09011 * 109.46996 * 299.99710 * 1 2 3 29 29 H 1.09001 * 109.47224 * 59.99459 * 1 2 3 30 30 H 1.08999 * 109.47417 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47701 * 54.99999 * 4 2 1 32 32 H 1.09002 * 109.47351 * 294.99389 * 4 2 1 33 33 H 1.09000 * 109.47591 * 264.86529 * 6 5 4 34 34 H 1.09002 * 109.47462 * 24.86818 * 6 5 4 35 35 H 1.09000 * 109.47327 * 144.86571 * 6 5 4 36 36 H 0.97006 * 119.99436 * 180.02562 * 10 9 7 37 37 H 0.96996 * 119.99689 * 264.99859 * 15 2 1 38 38 H 1.09001 * 109.47384 * 299.99760 * 18 16 15 39 39 H 1.09000 * 109.47451 * 60.00508 * 18 16 15 40 40 H 1.08992 * 109.24435 * 310.44487 * 21 19 18 41 41 H 1.09007 * 109.23875 * 69.88863 * 21 19 18 42 42 H 1.08995 * 109.38148 * 50.17001 * 22 21 19 43 43 H 1.08996 * 109.38654 * 169.96146 * 22 21 19 44 44 H 1.09000 * 109.55280 * 183.50106 * 23 22 21 45 45 H 1.09003 * 109.54978 * 303.79299 * 23 22 21 46 46 H 1.09001 * 109.55172 * 296.04732 * 27 19 18 47 47 H 1.09000 * 109.55253 * 56.34089 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2491 5 7 3.5000 -0.8266 1.1904 6 6 4.1257 -1.9921 0.5610 7 6 4.2799 0.1645 1.7239 8 1 3.8782 1.1592 1.8491 9 6 5.5867 -0.1091 2.1036 10 7 6.0021 -1.3557 2.1813 11 14 6.7558 1.2917 2.5042 12 1 8.0815 0.7379 2.8798 13 1 6.9040 2.1683 1.3148 14 1 6.2112 2.0823 3.6372 15 7 2.0182 -0.6906 -1.1963 16 6 2.1469 -0.0181 -2.3572 17 8 1.8581 1.1585 -2.4117 18 6 2.6496 -0.7285 -3.5876 19 6 2.7016 0.2549 -4.7586 20 1 3.3064 1.1178 -4.4799 21 6 3.3268 -0.4319 -5.9693 22 6 3.6229 0.5826 -7.0700 23 6 2.3143 1.0861 -7.6831 24 16 1.3662 1.9700 -6.4102 25 8 2.1411 3.0669 -5.9458 26 8 0.0537 2.2045 -6.9016 27 6 1.2828 0.7192 -5.0953 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.6054 -1.7199 1.2950 32 1 1.7517 -0.1585 2.1369 33 1 4.3653 -2.7324 1.3243 34 1 3.4374 -2.4271 -0.1636 35 1 5.0401 -1.6841 0.0539 36 1 6.9152 -1.5469 2.4470 37 1 2.2489 -1.6317 -1.1528 38 1 3.6490 -1.1203 -3.3981 39 1 1.9773 -1.5507 -3.8327 40 1 4.2555 -0.9162 -5.6678 41 1 2.6368 -1.1844 -6.3514 42 1 4.1720 1.4243 -6.6479 43 1 4.2255 0.1097 -7.8453 44 1 2.5349 1.7624 -8.5090 45 1 1.7331 0.2394 -8.0485 46 1 0.6924 -0.1308 -5.4376 47 1 0.8206 1.1526 -4.2084 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754329985.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:46 Heat of formation + Delta-G solvation = -96.375406 kcal Electronic energy + Delta-G solvation = -27908.118880 eV Core-core repulsion = 24025.667336 eV Total energy + Delta-G solvation = -3882.451544 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.83167 -37.82895 -36.94623 -36.31206 -36.09020 -34.12455 -33.02873 -31.43315 -30.40484 -28.27099 -27.62079 -26.24452 -25.64308 -23.36080 -21.93246 -20.92682 -20.23286 -19.90165 -18.97475 -16.97494 -16.86472 -16.73927 -16.65804 -15.82819 -15.56457 -15.38550 -15.07452 -14.70881 -14.45397 -14.00065 -13.75333 -13.47717 -13.35857 -13.12354 -13.04954 -12.69835 -12.59552 -12.19383 -12.10031 -12.08460 -11.93244 -11.66607 -11.63536 -11.56301 -11.40424 -11.33609 -11.04459 -10.83276 -10.74601 -10.68378 -10.64510 -10.29903 -10.22718 -10.05063 -9.89701 -9.36953 -8.67943 -8.47916 -6.78058 -5.75970 -3.22586 -0.10127 2.55899 2.98734 3.38972 3.43643 3.46745 3.51814 3.57048 3.73766 4.24849 4.26249 4.46579 4.48276 4.48936 4.60433 4.85513 4.94577 5.15643 5.19299 5.23632 5.29793 5.35667 5.42912 5.48594 5.56625 5.59712 5.63252 5.65427 5.76313 5.89236 5.92711 6.01232 6.05670 6.15037 6.40847 6.50498 6.55378 6.76927 7.04473 7.25957 7.63229 7.78055 7.95124 8.35331 8.63306 9.19926 9.82134 10.29718 11.28657 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015202 B = 0.003124 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.468663 B = 8960.695740 C = 9555.326528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.115 3.885 3 H 0.085 0.915 4 C 0.143 3.857 5 N -0.598 5.598 6 C 0.168 3.832 7 C -0.254 4.254 8 H 0.067 0.933 9 C 0.004 3.996 10 N -0.910 5.910 11 Si 0.904 3.096 12 H -0.291 1.291 13 H -0.284 1.284 14 H -0.283 1.283 15 N -0.703 5.703 16 C 0.509 3.491 17 O -0.549 6.549 18 C -0.133 4.133 19 C -0.060 4.060 20 H 0.102 0.898 21 C -0.137 4.137 22 C -0.109 4.109 23 C -0.608 4.608 24 S 2.415 3.585 25 O -0.931 6.931 26 O -0.951 6.951 27 C -0.599 4.599 28 H 0.061 0.939 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.040 0.960 32 H 0.062 0.938 33 H 0.031 0.969 34 H -0.009 1.009 35 H 0.041 0.959 36 H 0.252 0.748 37 H 0.397 0.603 38 H 0.101 0.899 39 H 0.093 0.907 40 H 0.089 0.911 41 H 0.075 0.925 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.130 0.870 45 H 0.130 0.870 46 H 0.127 0.873 47 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.172 -3.725 -18.380 20.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.007 3.993 3 H 0.103 0.897 4 C 0.015 3.985 5 N -0.320 5.320 6 C 0.024 3.976 7 C -0.384 4.384 8 H 0.085 0.915 9 C -0.194 4.194 10 N -0.555 5.555 11 Si 0.734 3.266 12 H -0.217 1.217 13 H -0.210 1.210 14 H -0.209 1.209 15 N -0.354 5.354 16 C 0.296 3.704 17 O -0.428 6.428 18 C -0.174 4.174 19 C -0.080 4.080 20 H 0.120 0.880 21 C -0.175 4.175 22 C -0.147 4.147 23 C -0.737 4.737 24 S 2.598 3.402 25 O -0.929 6.929 26 O -0.948 6.948 27 C -0.729 4.729 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.080 0.920 33 H 0.049 0.951 34 H 0.009 0.991 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.232 0.768 38 H 0.120 0.880 39 H 0.111 0.889 40 H 0.107 0.893 41 H 0.094 0.906 42 H 0.105 0.895 43 H 0.104 0.896 44 H 0.148 0.852 45 H 0.149 0.851 46 H 0.145 0.855 47 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -8.543 -2.099 -18.375 20.372 hybrid contribution 1.078 -0.621 0.234 1.266 sum -7.465 -2.720 -18.140 19.804 Atomic orbital electron populations 1.22123 0.96588 1.01198 1.01789 1.21925 0.92072 0.99020 0.86264 0.89724 1.21047 0.85886 0.97462 0.94139 1.43799 0.99054 1.22755 1.66435 1.20812 0.93994 0.89094 0.93733 1.19135 0.94236 0.89705 1.35290 0.91517 1.24987 0.98728 0.96079 0.99642 1.70045 1.16988 1.16602 1.51882 0.86346 0.80255 0.81645 0.78392 1.21652 1.21021 1.20884 1.46069 1.65916 1.13928 1.09443 1.20483 0.77755 0.87400 0.84807 1.90630 1.51083 1.15987 1.85115 1.21686 1.03868 0.98962 0.92851 1.20637 0.92769 0.99907 0.94685 0.88001 1.21813 1.02854 0.98528 0.94284 1.21260 0.94554 1.00378 0.98556 1.30285 1.11294 1.14563 1.17533 1.08095 0.75727 0.77937 0.78471 1.93606 1.71676 1.47852 1.79733 1.93574 1.36889 1.84604 1.79740 1.30394 1.05468 1.17473 1.19552 0.91954 0.92962 0.93113 0.94211 0.91955 0.95103 0.99068 0.94032 0.93741 0.76753 0.88039 0.88893 0.89289 0.90637 0.89524 0.89565 0.85159 0.85149 0.85507 0.82730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.20 9.48 37.16 0.35 -1.85 16 2 C 0.11 1.95 2.88 -67.93 -0.20 1.76 16 3 H 0.08 1.73 7.58 -51.93 -0.39 1.34 16 4 C 0.14 2.70 5.29 -4.04 -0.02 2.68 16 5 N -0.60 -14.05 2.78 -181.12 -0.50 -14.55 16 6 C 0.17 3.77 8.51 59.84 0.51 4.27 16 7 C -0.25 -6.83 9.66 -15.06 -0.15 -6.98 16 8 H 0.07 1.79 7.86 -52.49 -0.41 1.38 16 9 C 0.00 0.10 5.12 -17.43 -0.09 0.01 16 10 N -0.91 -25.80 10.66 55.49 0.59 -25.21 16 11 Si 0.90 21.90 29.57 -169.99 -5.03 16.88 16 12 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 13 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 14 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 15 N -0.70 -10.78 4.52 -53.81 -0.24 -11.03 16 16 C 0.51 7.74 7.48 -10.98 -0.08 7.65 16 17 O -0.55 -10.23 13.60 5.56 0.08 -10.15 16 18 C -0.13 -1.36 5.16 -27.88 -0.14 -1.50 16 19 C -0.06 -0.58 1.67 -90.81 -0.15 -0.74 16 20 H 0.10 1.21 7.82 -51.93 -0.41 0.81 16 21 C -0.14 -0.86 4.93 -27.15 -0.13 -0.99 16 22 C -0.11 -0.68 5.73 -26.92 -0.15 -0.84 16 23 C -0.61 -3.79 6.35 37.18 0.24 -3.55 16 24 S 2.41 25.14 5.31 -107.50 -0.57 24.57 16 25 O -0.93 -13.75 17.93 -57.82 -1.04 -14.79 16 26 O -0.95 -12.92 18.10 -57.82 -1.05 -13.97 16 27 C -0.60 -5.77 5.39 37.18 0.20 -5.57 16 28 H 0.06 0.81 8.14 -51.92 -0.42 0.39 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.04 0.68 8.07 -51.93 -0.42 0.26 16 32 H 0.06 1.20 8.04 -51.93 -0.42 0.78 16 33 H 0.03 0.77 7.35 -51.93 -0.38 0.38 16 34 H -0.01 -0.16 5.76 -51.93 -0.30 -0.46 16 35 H 0.04 1.02 7.31 -51.93 -0.38 0.64 16 36 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 37 H 0.40 5.47 6.20 -40.82 -0.25 5.22 16 38 H 0.10 0.96 8.10 -51.93 -0.42 0.54 16 39 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.09 0.50 8.06 -51.93 -0.42 0.08 16 41 H 0.07 0.32 8.09 -51.93 -0.42 -0.10 16 42 H 0.09 0.62 8.01 -51.93 -0.42 0.21 16 43 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.13 0.68 8.14 -51.93 -0.42 0.25 16 45 H 0.13 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.13 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.15 1.91 5.85 -51.93 -0.30 1.61 16 LS Contribution 378.99 15.07 5.71 5.71 Total: -1.00 -36.77 378.99 -9.73 -46.49 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -7.86 Total: 1.69 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: 0.18 Total: -5.65 kcal Atomic # 7 Polarization: -50.63 SS G_CDS: -0.16 Total: -50.79 kcal Atomic # 8 Polarization: -36.90 SS G_CDS: -2.01 Total: -38.91 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.03 Total: 16.88 kcal Atomic # 16 Polarization: 25.14 SS G_CDS: -0.57 Total: 24.57 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -36.77 -9.73 -46.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754329985.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.881 kcal (2) G-P(sol) polarization free energy of solvation -36.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds