Wall clock time and date at job start Tue Mar 31 2020 18:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47052 * 2 1 4 4 C 1.53006 * 109.47330 * 119.99504 * 2 1 3 5 5 N 1.46494 * 109.47290 * 175.00084 * 4 2 1 6 6 C 1.46498 * 120.00041 * 89.99968 * 5 4 2 7 7 C 1.36939 * 119.99692 * 270.00416 * 5 4 2 8 8 H 1.07995 * 120.00720 * 22.01386 * 7 5 4 9 9 C 1.38818 * 119.99823 * 202.01141 * 7 5 4 10 10 N 1.31618 * 119.99752 * 14.21364 * 9 7 5 11 11 Si 1.86792 * 120.00073 * 194.21379 * 9 7 5 12 12 H 1.48503 * 109.47378 * 90.00151 * 11 9 7 13 13 H 1.48503 * 109.46970 * 210.00042 * 11 9 7 14 14 H 1.48501 * 109.47212 * 329.99969 * 11 9 7 15 15 N 1.46492 * 109.47030 * 239.99701 * 2 1 3 16 16 C 1.34780 * 120.00128 * 84.72594 * 15 2 1 17 17 O 1.21283 * 119.99547 * 0.27133 * 16 15 2 18 18 C 1.50702 * 120.00371 * 180.27297 * 16 15 2 19 19 C 1.52995 * 109.47406 * 179.97438 * 18 16 15 20 20 H 1.08996 * 109.38483 * 305.00334 * 19 18 16 21 21 C 1.52582 * 109.38802 * 185.21219 * 19 18 16 22 22 C 1.52584 * 110.64716 * 169.85507 * 21 19 18 23 23 C 1.53046 * 109.98333 * 69.98548 * 22 21 19 24 24 S 1.81665 * 108.99825 * 296.35456 * 23 22 21 25 25 O 1.42098 * 108.66200 * 168.62908 * 24 23 22 26 26 O 1.42101 * 108.66330 * 299.97008 * 24 23 22 27 27 C 1.53039 * 109.38351 * 64.79218 * 19 18 16 28 28 H 1.09003 * 109.46999 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47312 * 300.00437 * 1 2 3 30 30 H 1.08992 * 109.47379 * 60.00301 * 1 2 3 31 31 H 1.09000 * 109.47180 * 295.00355 * 4 2 1 32 32 H 1.09005 * 109.46475 * 55.00002 * 4 2 1 33 33 H 1.08999 * 109.46989 * 95.14828 * 6 5 4 34 34 H 1.09006 * 109.46995 * 215.14081 * 6 5 4 35 35 H 1.08998 * 109.47276 * 335.14660 * 6 5 4 36 36 H 0.97001 * 119.99914 * 179.97438 * 10 9 7 37 37 H 0.97005 * 120.00475 * 264.99791 * 15 2 1 38 38 H 1.08997 * 109.47088 * 300.00161 * 18 16 15 39 39 H 1.09005 * 109.46697 * 59.99738 * 18 16 15 40 40 H 1.08999 * 109.24064 * 290.15970 * 21 19 18 41 41 H 1.09002 * 109.24288 * 49.55186 * 21 19 18 42 42 H 1.08992 * 109.38884 * 190.14309 * 22 21 19 43 43 H 1.09001 * 109.38452 * 309.83426 * 22 21 19 44 44 H 1.09000 * 109.54815 * 56.20736 * 23 22 21 45 45 H 1.08998 * 109.54701 * 176.40183 * 23 22 21 46 46 H 1.09001 * 109.54587 * 303.66010 * 27 19 18 47 47 H 1.08994 * 109.55423 * 63.94601 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 7 3.5001 -0.8263 1.1907 6 6 4.3343 0.2342 1.7613 7 6 4.0849 -1.9158 0.6024 8 1 3.5313 -2.5055 -0.1131 9 6 5.3897 -2.2623 0.9257 10 7 5.9684 -1.7332 1.9829 11 14 6.3242 -3.4792 -0.1396 12 1 7.0474 -2.7468 -1.2101 13 1 7.2999 -4.2226 0.6976 14 1 5.3684 -4.4359 -0.7532 15 7 2.0183 -0.6906 -1.1961 16 6 2.1418 -0.0197 -2.3585 17 8 1.8533 1.1570 -2.4130 18 6 2.6382 -0.7317 -3.5905 19 6 2.6839 0.2498 -4.7632 20 1 1.7028 0.7075 -4.8903 21 6 3.0618 -0.5002 -6.0371 22 6 2.8737 0.3903 -7.2617 23 6 3.9296 1.4982 -7.2699 24 16 3.6826 2.5614 -5.8177 25 8 4.8089 3.4173 -5.6840 26 8 2.3810 3.1275 -5.8848 27 6 3.7189 1.3393 -4.4737 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5137 -0.8899 31 1 1.7517 -0.1582 2.1370 32 1 1.6054 -1.7197 1.2952 33 1 4.6182 -0.0347 2.7787 34 1 5.2313 0.3571 1.1542 35 1 3.7742 1.1692 1.7754 36 1 6.8800 -1.9756 2.2090 37 1 2.2490 -1.6318 -1.1525 38 1 3.6382 -1.1238 -3.4053 39 1 1.9643 -1.5539 -3.8312 40 1 4.1048 -0.8105 -5.9752 41 1 2.4303 -1.3833 -6.1347 42 1 2.9733 -0.2111 -8.1652 43 1 1.8801 0.8378 -7.2344 44 1 4.9243 1.0542 -7.2319 45 1 3.8292 2.0909 -8.1791 46 1 3.4785 1.8293 -3.5302 47 1 4.7112 0.8926 -4.4118 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754329989.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:50 Heat of formation + Delta-G solvation = -99.023436 kcal Electronic energy + Delta-G solvation = -28177.276662 eV Core-core repulsion = 24294.710290 eV Total energy + Delta-G solvation = -3882.566372 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.74331 -37.76772 -36.87672 -36.27225 -36.01631 -34.09584 -32.95720 -31.49748 -30.29553 -28.17296 -27.54694 -26.22727 -25.67164 -23.29039 -21.93326 -20.94225 -20.11487 -19.82022 -18.90763 -17.09667 -16.82971 -16.61122 -16.32604 -15.82996 -15.56217 -15.41398 -15.10024 -14.58447 -14.40968 -13.93982 -13.82203 -13.43728 -13.23718 -13.12940 -12.99078 -12.63156 -12.33561 -12.17830 -12.11972 -12.02411 -11.98970 -11.66881 -11.59733 -11.55637 -11.41030 -11.09077 -10.98172 -10.93000 -10.89720 -10.67520 -10.45485 -10.36322 -10.20858 -10.05871 -9.95240 -9.31479 -8.63982 -8.45532 -6.82489 -5.80976 -3.27310 -0.01768 2.63776 3.06473 3.27202 3.31435 3.36569 3.60582 3.65350 3.81014 4.30778 4.33420 4.38761 4.52960 4.54387 4.69105 4.93806 5.04758 5.22522 5.26649 5.28339 5.33398 5.40448 5.49442 5.53070 5.57907 5.62330 5.63840 5.72031 5.80714 5.91160 5.99611 6.08231 6.11965 6.17607 6.43487 6.44124 6.72272 6.79412 7.09874 7.32690 7.60569 7.71310 8.08202 8.29087 8.72213 9.13392 9.77647 10.28110 11.23298 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012379 B = 0.003807 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.429847 B = 7352.492835 C = 8227.696691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.116 3.884 3 H 0.077 0.923 4 C 0.141 3.859 5 N -0.599 5.599 6 C 0.163 3.837 7 C -0.253 4.253 8 H 0.065 0.935 9 C 0.004 3.996 10 N -0.902 5.902 11 Si 0.899 3.101 12 H -0.288 1.288 13 H -0.291 1.291 14 H -0.279 1.279 15 N -0.695 5.695 16 C 0.510 3.490 17 O -0.557 6.557 18 C -0.135 4.135 19 C -0.057 4.057 20 H 0.099 0.901 21 C -0.139 4.139 22 C -0.107 4.107 23 C -0.610 4.610 24 S 2.415 3.585 25 O -0.949 6.949 26 O -0.935 6.935 27 C -0.599 4.599 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.031 0.969 34 H 0.039 0.961 35 H -0.002 1.002 36 H 0.253 0.747 37 H 0.403 0.597 38 H 0.100 0.900 39 H 0.096 0.904 40 H 0.077 0.923 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.131 0.869 45 H 0.130 0.870 46 H 0.156 0.844 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.261 0.306 -15.956 17.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.008 3.992 3 H 0.095 0.905 4 C 0.013 3.987 5 N -0.321 5.321 6 C 0.018 3.982 7 C -0.383 4.383 8 H 0.083 0.917 9 C -0.195 4.195 10 N -0.546 5.546 11 Si 0.729 3.271 12 H -0.216 1.216 13 H -0.217 1.217 14 H -0.205 1.205 15 N -0.345 5.345 16 C 0.297 3.703 17 O -0.437 6.437 18 C -0.176 4.176 19 C -0.077 4.077 20 H 0.117 0.883 21 C -0.177 4.177 22 C -0.146 4.146 23 C -0.739 4.739 24 S 2.598 3.402 25 O -0.946 6.946 26 O -0.932 6.932 27 C -0.729 4.729 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.049 0.951 34 H 0.058 0.942 35 H 0.016 0.984 36 H 0.063 0.937 37 H 0.239 0.761 38 H 0.118 0.882 39 H 0.114 0.886 40 H 0.096 0.904 41 H 0.105 0.895 42 H 0.103 0.897 43 H 0.103 0.897 44 H 0.150 0.850 45 H 0.148 0.852 46 H 0.174 0.826 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -7.365 2.046 -15.843 17.591 hybrid contribution 1.120 -1.970 -0.487 2.318 sum -6.245 0.075 -16.331 17.484 Atomic orbital electron populations 1.22119 0.96534 1.01363 1.01707 1.21871 0.92209 0.98317 0.86765 0.90490 1.21056 0.86086 0.98220 0.93333 1.43827 0.98879 1.21077 1.68326 1.20776 0.92835 0.86278 0.98268 1.18995 0.96782 1.05126 1.17381 0.91735 1.24995 0.98842 0.98910 0.96779 1.70068 1.13699 1.46185 1.24675 0.86348 0.80051 0.80740 0.79917 1.21561 1.21720 1.20479 1.45980 1.65216 1.14449 1.08840 1.20460 0.77577 0.87394 0.84918 1.90614 1.51503 1.16109 1.85494 1.21698 1.04111 0.98860 0.92895 1.20609 0.98931 0.94080 0.94091 0.88296 1.21829 1.03673 0.99438 0.92718 1.21241 0.97740 0.95621 0.99952 1.30301 1.08653 1.13799 1.21099 1.08078 0.75262 0.77765 0.79103 1.93583 1.53047 1.62458 1.85511 1.93582 1.39082 1.74909 1.85667 1.30397 1.07647 1.14636 1.20223 0.92952 0.92150 0.92831 0.93074 0.93046 0.95113 0.94184 0.98380 0.93670 0.76072 0.88192 0.88575 0.90428 0.89488 0.89660 0.89705 0.85036 0.85213 0.82605 0.85164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.22 9.48 37.16 0.35 -1.87 16 2 C 0.12 1.97 2.88 -67.93 -0.20 1.77 16 3 H 0.08 1.50 7.58 -51.93 -0.39 1.10 16 4 C 0.14 2.65 5.30 -4.04 -0.02 2.62 16 5 N -0.60 -13.90 2.82 -181.12 -0.51 -14.41 16 6 C 0.16 3.93 8.98 59.85 0.54 4.47 16 7 C -0.25 -6.23 8.85 -15.06 -0.13 -6.36 16 8 H 0.07 1.47 6.22 -52.49 -0.33 1.14 16 9 C 0.00 0.10 5.08 -17.43 -0.09 0.01 16 10 N -0.90 -25.26 10.72 55.49 0.59 -24.67 16 11 Si 0.90 20.28 29.58 -169.99 -5.03 15.25 16 12 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 13 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 14 H -0.28 -5.99 7.11 56.52 0.40 -5.58 16 15 N -0.69 -11.30 4.49 -53.80 -0.24 -11.54 16 16 C 0.51 8.08 7.48 -10.98 -0.08 8.00 16 17 O -0.56 -10.44 13.62 5.55 0.08 -10.36 16 18 C -0.13 -1.54 5.15 -27.88 -0.14 -1.68 16 19 C -0.06 -0.60 1.67 -90.82 -0.15 -0.75 16 20 H 0.10 1.11 7.82 -51.93 -0.41 0.71 16 21 C -0.14 -0.97 4.92 -27.16 -0.13 -1.10 16 22 C -0.11 -0.70 5.73 -26.92 -0.15 -0.86 16 23 C -0.61 -4.38 6.35 37.18 0.24 -4.15 16 24 S 2.41 28.03 5.31 -107.50 -0.57 27.45 16 25 O -0.95 -14.48 18.10 -57.81 -1.05 -15.53 16 26 O -0.94 -14.06 17.94 -57.81 -1.04 -15.10 16 27 C -0.60 -7.00 5.39 37.18 0.20 -6.80 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.05 0.91 8.07 -51.93 -0.42 0.49 16 32 H 0.05 0.93 8.04 -51.93 -0.42 0.52 16 33 H 0.03 0.80 7.36 -51.93 -0.38 0.42 16 34 H 0.04 1.04 7.31 -51.93 -0.38 0.66 16 35 H 0.00 -0.05 8.03 -51.93 -0.42 -0.47 16 36 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 37 H 0.40 6.34 6.51 -40.82 -0.27 6.08 16 38 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.10 0.84 8.09 -51.93 -0.42 0.42 16 40 H 0.08 0.47 8.09 -51.93 -0.42 0.04 16 41 H 0.09 0.48 8.06 -51.93 -0.42 0.06 16 42 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.08 0.58 8.01 -51.93 -0.42 0.17 16 44 H 0.13 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.13 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.16 2.30 5.87 -51.93 -0.31 1.99 16 47 H 0.13 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 379.66 15.07 5.72 5.72 Total: -1.00 -35.22 379.66 -9.72 -44.94 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -7.90 Total: 4.93 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: 0.22 Total: -6.70 kcal Atomic # 7 Polarization: -50.46 SS G_CDS: -0.16 Total: -50.62 kcal Atomic # 8 Polarization: -38.98 SS G_CDS: -2.01 Total: -40.99 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.03 Total: 15.25 kcal Atomic # 16 Polarization: 28.03 SS G_CDS: -0.57 Total: 27.45 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.22 -9.72 -44.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754329989.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.083 kcal (2) G-P(sol) polarization free energy of solvation -35.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds