Wall clock time and date at job start Tue Mar 31 2020 17:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46903 * 109.46887 * 2 1 4 4 C 1.46906 * 110.99547 * 165.60685 * 3 2 1 5 5 C 1.52993 * 109.47119 * 293.94722 * 4 3 2 6 6 C 1.53001 * 109.47399 * 180.02562 * 5 4 3 7 7 C 1.50693 * 109.47280 * 180.02562 * 6 5 4 8 8 H 1.07998 * 120.00277 * 0.02562 * 7 6 5 9 9 C 1.37882 * 119.99786 * 179.97438 * 7 6 5 10 10 N 1.31512 * 120.00022 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99959 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47336 * 270.00367 * 11 9 7 13 13 H 1.48501 * 109.46894 * 30.00368 * 11 9 7 14 14 H 1.48498 * 109.47094 * 150.00300 * 11 9 7 15 15 C 1.46898 * 110.99726 * 289.55438 * 3 2 1 16 16 C 1.50703 * 109.47058 * 160.42333 * 15 3 2 17 17 O 1.21282 * 119.99661 * 354.43203 * 16 15 3 18 18 N 1.34776 * 120.00355 * 174.43443 * 16 15 3 19 19 C 1.46493 * 120.00006 * 179.97438 * 18 16 15 20 20 H 1.08993 * 110.01495 * 34.30096 * 19 18 16 21 21 C 1.53875 * 110.03139 * 272.91975 * 19 18 16 22 22 C 1.54189 * 108.69291 * 193.57779 * 21 19 18 23 23 S 1.82916 * 105.10989 * 27.83376 * 22 21 19 24 24 O 1.42099 * 109.35289 * 244.51803 * 23 22 21 25 25 O 1.42104 * 109.35001 * 111.31500 * 23 22 21 26 26 C 1.55053 * 110.02781 * 155.68059 * 19 18 16 27 27 H 1.08996 * 109.47282 * 66.25421 * 1 2 3 28 28 H 1.09001 * 109.47080 * 186.25306 * 1 2 3 29 29 H 1.09002 * 109.47258 * 306.25173 * 1 2 3 30 30 H 1.08999 * 109.47199 * 239.99925 * 2 1 3 31 31 H 1.08997 * 109.47205 * 119.99413 * 2 1 3 32 32 H 1.09005 * 109.46502 * 173.94779 * 4 3 2 33 33 H 1.08998 * 109.47169 * 53.95037 * 4 3 2 34 34 H 1.09006 * 109.46893 * 60.00420 * 5 4 3 35 35 H 1.09004 * 109.47525 * 300.00614 * 5 4 3 36 36 H 1.09006 * 109.46983 * 60.00196 * 6 5 4 37 37 H 1.09004 * 109.47055 * 300.00622 * 6 5 4 38 38 H 0.96991 * 120.00080 * 359.97438 * 10 9 7 39 39 H 1.08995 * 109.47368 * 280.42204 * 15 3 2 40 40 H 1.09000 * 109.47197 * 40.42887 * 15 3 2 41 41 H 0.97000 * 119.99595 * 359.97438 * 18 16 15 42 42 H 1.09003 * 109.64621 * 313.38393 * 21 19 18 43 43 H 1.09000 * 109.64607 * 73.67115 * 21 19 18 44 44 H 1.08999 * 110.27111 * 268.94124 * 22 21 19 45 45 H 1.09004 * 110.42644 * 146.80354 * 22 21 19 46 46 H 1.08998 * 110.78783 * 279.99698 * 26 19 18 47 47 H 1.08998 * 110.78837 * 43.45301 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4476 1.4385 0.3409 5 6 3.6437 0.9832 1.7883 6 6 5.1308 1.0395 2.1436 7 6 5.3240 0.5905 3.5691 8 1 4.4715 0.2941 4.1622 9 6 6.5894 0.5570 4.1158 10 7 7.6276 0.9174 3.3934 11 14 6.8289 0.0010 5.8830 12 1 6.7387 1.1750 6.7878 13 1 5.7741 -0.9814 6.2401 14 1 8.1643 -0.6326 6.0259 15 6 1.7623 2.0343 -1.2923 16 6 1.8192 3.5307 -1.1229 17 8 1.9506 4.0111 -0.0171 18 7 1.7242 4.3350 -2.2001 19 6 1.7790 5.7896 -2.0353 20 1 2.4538 6.0474 -1.2191 21 6 0.3712 6.3411 -1.7492 22 6 0.3966 7.8733 -1.9200 23 16 1.7260 8.1958 -3.1342 24 8 2.7674 8.9323 -2.5078 25 8 1.1527 8.6673 -4.3460 26 6 2.2584 6.4555 -3.3509 27 1 -0.3633 0.4138 -0.9406 28 1 -0.3633 -1.0216 0.1119 29 1 -0.3634 0.6077 0.8287 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 3.8096 2.4606 0.2292 33 1 4.0051 0.7806 -0.3257 34 1 3.2816 -0.0388 1.8999 35 1 3.0860 1.6411 2.4550 36 1 5.4926 2.0617 2.0321 37 1 5.6888 0.3819 1.4770 38 1 7.5032 1.2064 2.4759 39 1 2.5176 1.7213 -2.0130 40 1 0.7746 1.7469 -1.6531 41 1 1.6195 3.9507 -3.0846 42 1 -0.3419 5.9066 -2.4498 43 1 0.0794 6.0898 -0.7295 44 1 0.6266 8.3554 -0.9698 45 1 -0.5600 8.2293 -2.3026 46 1 3.3425 6.3912 -3.4443 47 1 1.7674 6.0052 -4.2136 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129673938.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:10:10 Heat of formation + Delta-G solvation = -111.019826 kcal Electronic energy + Delta-G solvation = -26651.762233 eV Core-core repulsion = 22768.675659 eV Total energy + Delta-G solvation = -3883.086574 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.22718 -37.98670 -37.50919 -36.73697 -36.42828 -34.08003 -33.40458 -31.72163 -30.76373 -29.99993 -27.71858 -25.58046 -24.86813 -22.91207 -22.32249 -21.33211 -20.68512 -19.95440 -19.29433 -17.76308 -17.42881 -17.03234 -16.67988 -16.17956 -15.90989 -15.67752 -15.06395 -14.98883 -14.72582 -14.56199 -14.34203 -13.77985 -13.65888 -13.48433 -13.25347 -12.94706 -12.78543 -12.77218 -12.59142 -12.48164 -12.37862 -12.11899 -11.87620 -11.67868 -11.48733 -11.36119 -11.16997 -10.97110 -10.91909 -10.69459 -10.56633 -10.08887 -9.92005 -9.68316 -9.63765 -9.48595 -8.47983 -8.26219 -8.20015 -6.30117 -3.98075 -0.50181 1.95029 2.48903 2.71853 3.05571 3.47574 3.48144 3.51273 3.66863 3.74004 3.96684 4.09988 4.12686 4.24968 4.37390 4.59772 4.63684 4.89759 4.92005 4.95157 5.07370 5.11178 5.15630 5.25751 5.36419 5.45557 5.46042 5.47684 5.64734 5.75643 5.86758 5.99368 6.02052 6.18842 6.25484 6.63230 6.64295 6.97844 7.07942 7.24262 7.27750 7.50726 7.63879 8.06920 8.30373 8.54078 8.95713 9.74045 11.10714 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013011 B = 0.002393 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.530517 B =11699.306866 C =13234.828335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.046 3.954 3 N -0.520 5.520 4 C 0.058 3.942 5 C -0.095 4.095 6 C 0.009 3.991 7 C -0.598 4.598 8 H 0.049 0.951 9 C 0.012 3.988 10 N -0.916 5.916 11 Si 1.072 2.928 12 H -0.288 1.288 13 H -0.289 1.289 14 H -0.285 1.285 15 C 0.034 3.966 16 C 0.511 3.489 17 O -0.499 6.499 18 N -0.728 5.728 19 C 0.151 3.849 20 H 0.114 0.886 21 C -0.129 4.129 22 C -0.588 4.588 23 S 2.397 3.603 24 O -0.929 6.929 25 O -0.936 6.936 26 C -0.607 4.607 27 H 0.046 0.954 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.031 0.969 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.025 0.975 34 H 0.048 0.952 35 H 0.060 0.940 36 H 0.006 0.994 37 H 0.003 0.997 38 H 0.268 0.732 39 H 0.062 0.938 40 H 0.103 0.897 41 H 0.402 0.598 42 H 0.087 0.913 43 H 0.101 0.899 44 H 0.142 0.858 45 H 0.141 0.859 46 H 0.146 0.854 47 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.747 8.311 -18.758 27.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.082 4.082 3 N -0.245 5.245 4 C -0.069 4.069 5 C -0.133 4.133 6 C -0.028 4.028 7 C -0.636 4.636 8 H 0.067 0.933 9 C -0.191 4.191 10 N -0.553 5.553 11 Si 0.900 3.100 12 H -0.214 1.214 13 H -0.215 1.215 14 H -0.211 1.211 15 C -0.098 4.098 16 C 0.297 3.703 17 O -0.371 6.371 18 N -0.383 5.383 19 C 0.044 3.956 20 H 0.132 0.868 21 C -0.169 4.169 22 C -0.718 4.718 23 S 2.579 3.421 24 O -0.926 6.926 25 O -0.933 6.933 26 C -0.736 4.736 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.049 0.951 31 H 0.107 0.893 32 H 0.090 0.910 33 H 0.044 0.956 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.025 0.975 37 H 0.021 0.979 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.121 0.879 41 H 0.237 0.763 42 H 0.106 0.894 43 H 0.120 0.880 44 H 0.160 0.840 45 H 0.159 0.841 46 H 0.164 0.836 47 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -17.423 9.486 -16.791 25.990 hybrid contribution -1.082 -1.065 -2.030 2.535 sum -18.505 8.420 -18.821 27.705 Atomic orbital electron populations 1.21807 0.95218 1.01573 1.01841 1.22189 0.95656 0.88573 1.01734 1.61757 1.19366 1.16461 1.26877 1.22342 0.84845 1.01033 0.98668 1.21492 0.99637 0.99633 0.92506 1.19194 0.90645 0.95990 0.96983 1.22080 0.95377 1.48294 0.97842 0.93300 1.25859 0.92397 0.95113 1.05720 1.70745 1.32080 1.41785 1.10671 0.83513 0.75569 0.76431 0.74478 1.21447 1.21519 1.21066 1.21971 1.03132 0.91257 0.93400 1.20859 0.75876 0.89309 0.84287 1.90779 1.45452 1.76293 1.24552 1.45892 1.77155 1.04750 1.10495 1.21472 0.96616 0.82178 0.95373 0.86772 1.22361 0.97673 0.90478 1.06404 1.30466 1.18778 1.04554 1.18007 1.08868 0.77972 0.78085 0.77182 1.93665 1.54336 1.67690 1.76873 1.93631 1.78143 1.78225 1.43277 1.31057 1.12756 1.24391 1.05351 0.93481 0.92322 0.91551 0.95077 0.89292 0.90964 0.95642 0.93361 0.92167 0.97536 0.97906 0.92165 0.92039 0.87907 0.76278 0.89401 0.88003 0.84015 0.84051 0.83588 0.83853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.84 37.16 0.37 -1.11 16 2 C 0.05 0.58 5.55 -3.82 -0.02 0.56 16 3 N -0.52 -7.56 4.00 -236.07 -0.95 -8.50 16 4 C 0.06 1.04 4.60 -3.82 -0.02 1.02 16 5 C -0.09 -2.07 5.11 -26.73 -0.14 -2.21 16 6 C 0.01 0.25 4.28 -27.89 -0.12 0.13 16 7 C -0.60 -17.70 9.11 -34.44 -0.31 -18.02 16 8 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 9 C 0.01 0.37 5.46 -17.82 -0.10 0.27 16 10 N -0.92 -28.93 13.65 55.43 0.76 -28.17 16 11 Si 1.07 26.13 29.90 -169.99 -5.08 21.05 16 12 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 14 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 15 C 0.03 0.36 5.32 -4.98 -0.03 0.33 16 16 C 0.51 5.92 7.37 -10.98 -0.08 5.84 16 17 O -0.50 -8.25 15.17 5.56 0.08 -8.17 16 18 N -0.73 -5.22 5.13 -52.32 -0.27 -5.49 16 19 C 0.15 1.02 2.90 -66.39 -0.19 0.83 16 20 H 0.11 1.01 7.59 -51.93 -0.39 0.61 16 21 C -0.13 -0.70 6.03 -25.65 -0.15 -0.85 16 22 C -0.59 -2.54 7.26 37.78 0.27 -2.27 16 23 S 2.40 14.94 6.11 -107.50 -0.66 14.28 16 24 O -0.93 -9.88 18.15 -57.71 -1.05 -10.92 16 25 O -0.94 -8.73 18.15 -57.71 -1.05 -9.77 16 26 C -0.61 -2.64 6.85 38.24 0.26 -2.37 16 27 H 0.05 0.39 6.67 -51.93 -0.35 0.05 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.03 0.35 8.07 -51.93 -0.42 -0.07 16 31 H 0.09 1.28 5.97 -51.93 -0.31 0.97 16 32 H 0.07 1.39 6.88 -51.93 -0.36 1.03 16 33 H 0.03 0.44 8.12 -51.93 -0.42 0.02 16 34 H 0.05 1.02 6.30 -51.93 -0.33 0.69 16 35 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 36 H 0.01 0.18 8.01 -51.93 -0.42 -0.24 16 37 H 0.00 0.07 8.01 -51.93 -0.42 -0.34 16 38 H 0.27 8.43 7.22 -40.82 -0.29 8.13 16 39 H 0.06 0.56 8.00 -51.93 -0.42 0.14 16 40 H 0.10 0.81 6.25 -51.93 -0.32 0.48 16 41 H 0.40 1.52 8.59 -40.82 -0.35 1.16 16 42 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.14 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.14 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.15 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.14 0.26 8.10 -51.93 -0.42 -0.16 16 LS Contribution 387.92 15.07 5.85 5.85 Total: -1.00 -41.05 387.92 -10.42 -51.47 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: -7.80 Total: -3.75 kcal Atomic # 6 Polarization: -17.60 SS G_CDS: -0.26 Total: -17.86 kcal Atomic # 7 Polarization: -41.71 SS G_CDS: -0.46 Total: -42.17 kcal Atomic # 8 Polarization: -26.86 SS G_CDS: -2.01 Total: -28.87 kcal Atomic # 14 Polarization: 26.13 SS G_CDS: -5.08 Total: 21.05 kcal Atomic # 16 Polarization: 14.94 SS G_CDS: -0.66 Total: 14.28 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -41.05 -10.42 -51.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129673938.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.553 kcal (2) G-P(sol) polarization free energy of solvation -41.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds