Wall clock time and date at job start Tue Mar 31 2020 17:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46903 * 109.46887 * 2 1 4 4 C 1.46906 * 110.99547 * 165.60685 * 3 2 1 5 5 C 1.52993 * 109.47119 * 293.94722 * 4 3 2 6 6 C 1.53001 * 109.47399 * 180.02562 * 5 4 3 7 7 C 1.50693 * 109.47280 * 180.02562 * 6 5 4 8 8 H 1.07998 * 120.00277 * 0.02562 * 7 6 5 9 9 C 1.37882 * 119.99786 * 179.97438 * 7 6 5 10 10 N 1.31512 * 120.00022 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99959 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47336 * 270.00367 * 11 9 7 13 13 H 1.48501 * 109.46894 * 30.00368 * 11 9 7 14 14 H 1.48498 * 109.47094 * 150.00300 * 11 9 7 15 15 C 1.46898 * 110.99726 * 289.55438 * 3 2 1 16 16 C 1.50703 * 109.47058 * 160.42333 * 15 3 2 17 17 O 1.21282 * 119.99661 * 354.43203 * 16 15 3 18 18 N 1.34776 * 120.00355 * 174.43443 * 16 15 3 19 19 C 1.46493 * 120.00006 * 179.97438 * 18 16 15 20 20 H 1.08993 * 110.01495 * 34.30096 * 19 18 16 21 21 C 1.53875 * 110.03139 * 272.91975 * 19 18 16 22 22 C 1.54189 * 108.69291 * 193.57779 * 21 19 18 23 23 S 1.82916 * 105.10989 * 27.83376 * 22 21 19 24 24 O 1.42099 * 109.35289 * 244.51803 * 23 22 21 25 25 O 1.42104 * 109.35001 * 111.31500 * 23 22 21 26 26 C 1.55053 * 110.02781 * 155.68059 * 19 18 16 27 27 H 1.08996 * 109.47282 * 66.25421 * 1 2 3 28 28 H 1.09001 * 109.47080 * 186.25306 * 1 2 3 29 29 H 1.09002 * 109.47258 * 306.25173 * 1 2 3 30 30 H 1.08999 * 109.47199 * 239.99925 * 2 1 3 31 31 H 1.08997 * 109.47205 * 119.99413 * 2 1 3 32 32 H 1.09005 * 109.46502 * 173.94779 * 4 3 2 33 33 H 1.08998 * 109.47169 * 53.95037 * 4 3 2 34 34 H 1.09006 * 109.46893 * 60.00420 * 5 4 3 35 35 H 1.09004 * 109.47525 * 300.00614 * 5 4 3 36 36 H 1.09006 * 109.46983 * 60.00196 * 6 5 4 37 37 H 1.09004 * 109.47055 * 300.00622 * 6 5 4 38 38 H 0.96991 * 120.00080 * 359.97438 * 10 9 7 39 39 H 1.08995 * 109.47368 * 280.42204 * 15 3 2 40 40 H 1.09000 * 109.47197 * 40.42887 * 15 3 2 41 41 H 0.97000 * 119.99595 * 359.97438 * 18 16 15 42 42 H 1.09003 * 109.64621 * 313.38393 * 21 19 18 43 43 H 1.09000 * 109.64607 * 73.67115 * 21 19 18 44 44 H 1.08999 * 110.27111 * 268.94124 * 22 21 19 45 45 H 1.09004 * 110.42644 * 146.80354 * 22 21 19 46 46 H 1.08998 * 110.78783 * 279.99698 * 26 19 18 47 47 H 1.08998 * 110.78837 * 43.45301 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4476 1.4385 0.3409 5 6 3.6437 0.9832 1.7883 6 6 5.1308 1.0395 2.1436 7 6 5.3240 0.5905 3.5691 8 1 4.4715 0.2941 4.1622 9 6 6.5894 0.5570 4.1158 10 7 7.6276 0.9174 3.3934 11 14 6.8289 0.0010 5.8830 12 1 6.7387 1.1750 6.7878 13 1 5.7741 -0.9814 6.2401 14 1 8.1643 -0.6326 6.0259 15 6 1.7623 2.0343 -1.2923 16 6 1.8192 3.5307 -1.1229 17 8 1.9506 4.0111 -0.0171 18 7 1.7242 4.3350 -2.2001 19 6 1.7790 5.7896 -2.0353 20 1 2.4538 6.0474 -1.2191 21 6 0.3712 6.3411 -1.7492 22 6 0.3966 7.8733 -1.9200 23 16 1.7260 8.1958 -3.1342 24 8 2.7674 8.9323 -2.5078 25 8 1.1527 8.6673 -4.3460 26 6 2.2584 6.4555 -3.3509 27 1 -0.3633 0.4138 -0.9406 28 1 -0.3633 -1.0216 0.1119 29 1 -0.3634 0.6077 0.8287 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 3.8096 2.4606 0.2292 33 1 4.0051 0.7806 -0.3257 34 1 3.2816 -0.0388 1.8999 35 1 3.0860 1.6411 2.4550 36 1 5.4926 2.0617 2.0321 37 1 5.6888 0.3819 1.4770 38 1 7.5032 1.2064 2.4759 39 1 2.5176 1.7213 -2.0130 40 1 0.7746 1.7469 -1.6531 41 1 1.6195 3.9507 -3.0846 42 1 -0.3419 5.9066 -2.4498 43 1 0.0794 6.0898 -0.7295 44 1 0.6266 8.3554 -0.9698 45 1 -0.5600 8.2293 -2.3026 46 1 3.3425 6.3912 -3.4443 47 1 1.7674 6.0052 -4.2136 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129673938.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:10:09 Heat of formation + Delta-G solvation = -144.738247 kcal Electronic energy + Delta-G solvation = -26653.224373 eV Core-core repulsion = 22768.675659 eV Total energy + Delta-G solvation = -3884.548715 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.08766 -38.97092 -38.16660 -37.56807 -37.09436 -36.11571 -34.12969 -33.50355 -31.67883 -30.66189 -29.05235 -26.89741 -25.69559 -24.62515 -23.28620 -22.38033 -21.73736 -21.21327 -19.85144 -18.98689 -18.47456 -18.01993 -17.60763 -16.88164 -16.79208 -16.52066 -16.25211 -15.91523 -15.65938 -15.62355 -15.29407 -15.10457 -14.98657 -14.85370 -14.34814 -13.92973 -13.64610 -13.58167 -13.40998 -13.27549 -13.22702 -13.12268 -13.02126 -12.78791 -12.71833 -12.44506 -12.27426 -12.15903 -11.96814 -11.93359 -11.90105 -11.69982 -11.46729 -11.38855 -10.83796 -10.68361 -10.56295 -10.21121 -9.28287 -8.72008 -6.41821 -1.00539 1.44399 1.50301 1.60237 1.65054 1.78312 2.04942 2.54956 2.55500 2.92554 3.00980 3.13309 3.26066 3.56221 3.66095 3.83142 3.92286 3.94304 4.01282 4.05724 4.18256 4.30551 4.40065 4.48751 4.50059 4.56992 4.57891 4.68132 4.75343 4.79020 4.86754 4.88817 4.95610 5.00250 5.01394 5.16733 5.35463 5.37261 5.41089 5.52002 5.93380 6.03177 6.09783 6.16606 6.55533 6.57389 7.29937 7.40366 8.68922 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013011 B = 0.002393 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.530517 B =11699.306866 C =13234.828335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.044 3.956 3 N -0.538 5.538 4 C 0.075 3.925 5 C -0.080 4.080 6 C 0.012 3.988 7 C -0.619 4.619 8 H 0.049 0.951 9 C -0.041 4.041 10 N -0.938 5.938 11 Si 1.122 2.878 12 H -0.274 1.274 13 H -0.267 1.267 14 H -0.279 1.279 15 C 0.033 3.967 16 C 0.508 3.492 17 O -0.560 6.560 18 N -0.705 5.705 19 C 0.139 3.861 20 H 0.086 0.914 21 C -0.127 4.127 22 C -0.571 4.571 23 S 2.405 3.595 24 O -0.982 6.982 25 O -0.967 6.967 26 C -0.585 4.585 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.047 0.953 30 H 0.050 0.950 31 H 0.062 0.938 32 H 0.052 0.948 33 H 0.033 0.967 34 H 0.055 0.945 35 H 0.039 0.961 36 H -0.020 1.020 37 H -0.009 1.009 38 H 0.254 0.746 39 H 0.085 0.915 40 H 0.140 0.860 41 H 0.423 0.577 42 H 0.117 0.883 43 H 0.084 0.916 44 H 0.143 0.857 45 H 0.167 0.833 46 H 0.152 0.848 47 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.973 6.961 -20.233 29.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.083 4.083 3 N -0.262 5.262 4 C -0.053 4.053 5 C -0.118 4.118 6 C -0.026 4.026 7 C -0.656 4.656 8 H 0.067 0.933 9 C -0.238 4.238 10 N -0.575 5.575 11 Si 0.942 3.058 12 H -0.199 1.199 13 H -0.192 1.192 14 H -0.204 1.204 15 C -0.097 4.097 16 C 0.295 3.705 17 O -0.436 6.436 18 N -0.361 5.361 19 C 0.032 3.968 20 H 0.104 0.896 21 C -0.167 4.167 22 C -0.703 4.703 23 S 2.592 3.408 24 O -0.979 6.979 25 O -0.964 6.964 26 C -0.716 4.716 27 H 0.090 0.910 28 H 0.092 0.908 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.051 0.949 34 H 0.074 0.926 35 H 0.058 0.942 36 H -0.002 1.002 37 H 0.009 0.991 38 H 0.064 0.936 39 H 0.102 0.898 40 H 0.157 0.843 41 H 0.262 0.738 42 H 0.135 0.865 43 H 0.103 0.897 44 H 0.161 0.839 45 H 0.185 0.815 46 H 0.170 0.830 47 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -19.674 8.169 -18.363 28.125 hybrid contribution -0.439 -0.666 -1.630 1.814 sum -20.113 7.503 -19.993 29.335 Atomic orbital electron populations 1.21753 0.93010 1.02438 1.02440 1.22245 0.97381 0.87318 1.01378 1.61592 1.16522 1.18094 1.30038 1.21929 0.87739 0.99649 0.95958 1.21245 0.95702 0.99763 0.95121 1.19122 0.93801 0.93817 0.95811 1.22514 0.95669 1.48228 0.99233 0.93301 1.27534 0.92214 0.94315 1.09746 1.70885 1.32873 1.43422 1.10353 0.82896 0.76391 0.77048 0.69462 1.19922 1.19179 1.20418 1.22138 1.05782 0.90075 0.91735 1.21155 0.75045 0.90157 0.84189 1.90768 1.48572 1.77258 1.27030 1.45659 1.75287 1.04635 1.10554 1.21538 0.97326 0.82120 0.95813 0.89605 1.22351 0.97142 0.90969 1.06223 1.30352 1.18714 1.04054 1.17171 1.08373 0.77490 0.78469 0.76516 1.93599 1.56597 1.70085 1.77642 1.93587 1.78494 1.79523 1.44801 1.30917 1.13528 1.21758 1.05387 0.90963 0.90802 0.93366 0.93135 0.91919 0.92910 0.94921 0.92605 0.94224 1.00156 0.99069 0.93633 0.89757 0.84272 0.73791 0.86457 0.89729 0.83871 0.81508 0.83018 0.80243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.84 71.98 0.71 -1.69 16 2 C 0.04 1.02 5.55 86.30 0.48 1.49 16 3 N -0.54 -15.02 4.00 -900.80 -3.61 -18.62 16 4 C 0.08 2.71 4.60 86.30 0.40 3.11 16 5 C -0.08 -3.63 5.11 30.59 0.16 -3.47 16 6 C 0.01 0.67 4.28 29.85 0.13 0.80 16 7 C -0.62 -37.50 9.11 25.60 0.23 -37.27 16 8 H 0.05 2.89 7.74 -2.91 -0.02 2.87 16 9 C -0.04 -2.50 5.46 84.66 0.46 -2.04 16 10 N -0.94 -60.54 13.65 21.45 0.29 -60.25 16 11 Si 1.12 52.30 29.90 68.60 2.05 54.36 16 12 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 13 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 14 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 15 C 0.03 0.61 5.32 85.56 0.46 1.06 16 16 C 0.51 11.09 7.37 87.66 0.65 11.74 16 17 O -0.56 -18.95 15.17 -3.04 -0.05 -18.99 16 18 N -0.71 -8.40 5.13 -437.83 -2.24 -10.64 16 19 C 0.14 1.70 2.90 45.99 0.13 1.84 16 20 H 0.09 1.59 7.59 -2.39 -0.02 1.58 16 21 C -0.13 -1.13 6.03 31.29 0.19 -0.94 16 22 C -0.57 -4.08 7.26 72.38 0.53 -3.56 16 23 S 2.40 28.61 6.11 -56.49 -0.34 28.27 16 24 O -0.98 -21.94 18.15 -127.49 -2.31 -24.26 16 25 O -0.97 -17.17 18.15 -127.49 -2.31 -19.48 16 26 C -0.59 -3.86 6.85 72.68 0.50 -3.36 16 27 H 0.07 0.88 6.67 -2.39 -0.02 0.87 16 28 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.05 0.98 8.07 -2.39 -0.02 0.96 16 31 H 0.06 1.77 5.97 -2.39 -0.01 1.75 16 32 H 0.05 2.11 6.88 -2.38 -0.02 2.09 16 33 H 0.03 1.12 8.12 -2.39 -0.02 1.10 16 34 H 0.06 2.40 6.30 -2.38 -0.02 2.39 16 35 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 36 H -0.02 -1.20 8.01 -2.38 -0.02 -1.22 16 37 H -0.01 -0.52 8.01 -2.39 -0.02 -0.53 16 38 H 0.25 16.64 7.22 -92.71 -0.67 15.97 16 39 H 0.08 1.21 8.00 -2.39 -0.02 1.19 16 40 H 0.14 1.52 6.25 -2.39 -0.01 1.50 16 41 H 0.42 1.44 8.59 -92.71 -0.80 0.64 16 42 H 0.12 0.37 8.14 -2.39 -0.02 0.35 16 43 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.14 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.17 0.40 8.14 -2.39 -0.02 0.39 16 46 H 0.15 0.95 8.14 -2.39 -0.02 0.94 16 47 H 0.18 -0.10 8.10 -2.39 -0.02 -0.11 16 Total: -1.00 -93.89 387.92 -3.25 -97.13 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: 0.27 Total: 4.77 kcal Atomic # 6 Polarization: -37.29 SS G_CDS: 5.01 Total: -32.28 kcal Atomic # 7 Polarization: -83.96 SS G_CDS: -5.56 Total: -89.51 kcal Atomic # 8 Polarization: -58.05 SS G_CDS: -4.67 Total: -62.73 kcal Atomic # 14 Polarization: 52.30 SS G_CDS: 2.05 Total: 54.36 kcal Atomic # 16 Polarization: 28.61 SS G_CDS: -0.34 Total: 28.27 kcal Total: -93.89 -3.25 -97.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129673938.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.606 kcal (2) G-P(sol) polarization free energy of solvation -93.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds