Wall clock time and date at job start Tue Mar 31 2020 17:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46512 * 109.47033 * 2 1 4 4 C 1.46491 * 119.99962 * 90.00019 * 3 2 1 5 5 C 1.50702 * 109.46957 * 269.99883 * 4 3 2 6 6 H 1.08002 * 120.00299 * 0.02562 * 5 4 3 7 7 C 1.37884 * 119.99942 * 179.72213 * 5 4 3 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 4 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 4 10 10 H 1.48504 * 109.47196 * 60.00645 * 9 7 5 11 11 H 1.48504 * 109.46887 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47679 * 300.00280 * 9 7 5 13 13 C 1.34774 * 119.99637 * 270.00069 * 3 2 1 14 14 O 1.21281 * 119.99656 * 179.97438 * 13 3 2 15 15 C 1.50708 * 120.00400 * 359.97438 * 13 3 2 16 16 N 1.46894 * 109.47017 * 180.02562 * 15 13 3 17 17 C 1.46473 * 111.00295 * 66.04761 * 16 15 13 18 18 C 1.53173 * 109.90138 * 162.99766 * 17 16 15 19 19 S 1.81817 * 108.67976 * 62.63757 * 18 17 16 20 20 O 1.42101 * 108.70202 * 61.93684 * 19 18 17 21 21 O 1.42101 * 108.70164 * 193.42941 * 19 18 17 22 22 C 1.81814 * 101.01682 * 307.68262 * 19 18 17 23 23 H 1.09003 * 109.60896 * 292.39260 * 22 19 18 24 24 C 1.53007 * 109.60042 * 172.07407 * 22 19 18 25 25 C 1.46473 * 111.00183 * 300.19144 * 16 15 13 26 26 H 1.08994 * 109.39764 * 76.87117 * 25 16 15 27 27 C 1.53003 * 109.39494 * 317.13068 * 25 16 15 28 28 H 1.09001 * 109.47311 * 300.00158 * 1 2 3 29 29 H 1.09003 * 109.47524 * 60.00120 * 1 2 3 30 30 H 1.09007 * 109.47128 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47453 * 240.00375 * 2 1 3 32 32 H 1.09003 * 109.47524 * 119.99880 * 2 1 3 33 33 H 1.09004 * 109.47166 * 150.00149 * 4 3 2 34 34 H 1.08994 * 109.47507 * 29.99855 * 4 3 2 35 35 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 36 36 H 1.08999 * 109.46957 * 300.00083 * 15 13 3 37 37 H 1.08998 * 109.46767 * 59.99658 * 15 13 3 38 38 H 1.09005 * 109.39749 * 283.13440 * 17 16 15 39 39 H 1.09002 * 109.39405 * 42.86426 * 17 16 15 40 40 H 1.09005 * 109.60543 * 182.39629 * 18 17 16 41 41 H 1.08997 * 109.60712 * 302.87894 * 18 17 16 42 42 H 1.08998 * 109.47247 * 59.99966 * 24 22 19 43 43 H 1.09005 * 109.46828 * 180.02562 * 24 22 19 44 44 H 1.08996 * 109.46779 * 299.99758 * 24 22 19 45 45 H 1.09003 * 109.47052 * 60.00560 * 27 25 16 46 46 H 1.09009 * 109.46565 * 180.02562 * 27 25 16 47 47 H 1.08996 * 109.47347 * 299.99950 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0719 1.2687 5 6 1.0065 2.7823 1.7037 6 1 0.1155 2.7248 1.0961 7 6 0.9932 3.5006 2.8805 8 7 2.0781 3.5703 3.6206 9 14 -0.5657 4.3748 3.4235 10 1 -1.6555 3.3811 3.5975 11 1 -0.3196 5.0709 4.7121 12 1 -0.9612 5.3678 2.3927 13 6 2.2428 2.0166 -1.1672 14 8 2.6466 3.1602 -1.1672 15 6 1.9922 1.3060 -2.4724 16 7 2.3108 2.2058 -3.5889 17 6 3.7434 2.5087 -3.6266 18 6 4.1200 3.0781 -4.9978 19 16 3.2246 4.6411 -5.2452 20 8 3.6318 5.5630 -4.2434 21 8 3.3207 5.0095 -6.6142 22 6 1.5168 4.1215 -4.8998 23 1 1.1776 3.4386 -5.6787 24 6 0.6047 5.3494 -4.8610 25 6 1.4844 3.4142 -3.5415 26 1 1.8690 4.0860 -2.7742 27 6 0.0425 3.0307 -3.2025 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.0643 2.7986 1.1383 34 1 2.5505 1.3453 2.0283 35 1 2.0689 4.0760 4.4484 36 1 2.6228 0.4188 -2.5299 37 1 0.9444 1.0114 -2.5302 38 1 3.9793 3.2401 -2.8535 39 1 4.3112 1.5962 -3.4451 40 1 5.1938 3.2620 -5.0351 41 1 3.8408 2.3694 -5.7774 42 1 0.6405 5.8592 -5.8238 43 1 -0.4183 5.0356 -4.6534 44 1 0.9422 6.0281 -4.0778 45 1 0.0171 2.5341 -2.2325 46 1 -0.5737 3.9292 -3.1674 47 1 -0.3431 2.3557 -3.9665 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000247225313.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:39:32 Heat of formation + Delta-G solvation = -116.613463 kcal Electronic energy + Delta-G solvation = -29181.507170 eV Core-core repulsion = 25298.178037 eV Total energy + Delta-G solvation = -3883.329132 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.53716 -39.13289 -38.01728 -37.13151 -36.84744 -35.28832 -34.84625 -32.85359 -31.46371 -30.16374 -29.28764 -27.68144 -25.86124 -24.58422 -24.03418 -23.25991 -21.65542 -19.94576 -19.68827 -18.69657 -18.12479 -17.86825 -17.66695 -17.27051 -17.01811 -16.63923 -16.34540 -16.00360 -15.77993 -15.10848 -14.63899 -14.60371 -14.44543 -14.26114 -14.06897 -13.81610 -13.66155 -13.52062 -13.28492 -13.20950 -13.16202 -13.11586 -13.08279 -12.91350 -12.72066 -12.69037 -12.51946 -12.42415 -12.31224 -12.11847 -11.90376 -11.72000 -11.63447 -11.49992 -11.13842 -10.89640 -10.62329 -9.39006 -9.31250 -8.20876 -6.33514 -0.97162 1.34140 1.38181 1.44665 1.69016 1.83922 2.32096 2.45384 2.51613 2.61631 3.05270 3.09362 3.39695 3.63144 3.72550 3.79331 3.99539 4.07613 4.15839 4.22924 4.37571 4.41134 4.48346 4.55367 4.58675 4.60549 4.69132 4.71802 4.77865 4.84097 4.92456 4.98096 5.00279 5.07566 5.10948 5.18350 5.25023 5.28295 5.55944 5.62421 5.67074 5.80787 5.89536 6.09364 6.73381 6.85395 7.31669 7.53123 8.85959 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014991 B = 0.004041 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.317178 B = 6927.809748 C = 7493.166030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.101 3.899 3 N -0.601 5.601 4 C 0.261 3.739 5 C -0.526 4.526 6 H 0.057 0.943 7 C 0.006 3.994 8 N -0.931 5.931 9 Si 0.959 3.041 10 H -0.259 1.259 11 H -0.283 1.283 12 H -0.280 1.280 13 C 0.462 3.538 14 O -0.588 6.588 15 C 0.041 3.959 16 N -0.507 5.507 17 C 0.045 3.955 18 C -0.570 4.570 19 S 2.390 3.610 20 O -0.988 6.988 21 O -0.974 6.974 22 C -0.531 4.531 23 H 0.181 0.819 24 C -0.151 4.151 25 C 0.076 3.924 26 H 0.054 0.946 27 C -0.143 4.143 28 H 0.034 0.966 29 H 0.057 0.943 30 H 0.091 0.909 31 H 0.113 0.887 32 H 0.071 0.929 33 H -0.008 1.008 34 H 0.017 0.983 35 H 0.264 0.736 36 H 0.141 0.859 37 H 0.136 0.864 38 H 0.042 0.958 39 H 0.121 0.879 40 H 0.153 0.847 41 H 0.178 0.822 42 H 0.084 0.916 43 H 0.105 0.895 44 H 0.051 0.949 45 H 0.046 0.954 46 H 0.067 0.933 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.296 -10.788 -19.355 22.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.021 4.021 3 N -0.332 5.332 4 C 0.139 3.861 5 C -0.565 4.565 6 H 0.075 0.925 7 C -0.193 4.193 8 N -0.572 5.572 9 Si 0.784 3.216 10 H -0.183 1.183 11 H -0.208 1.208 12 H -0.205 1.205 13 C 0.250 3.750 14 O -0.469 6.469 15 C -0.090 4.090 16 N -0.229 5.229 17 C -0.084 4.084 18 C -0.703 4.703 19 S 2.579 3.421 20 O -0.985 6.985 21 O -0.971 6.971 22 C -0.643 4.643 23 H 0.199 0.801 24 C -0.209 4.209 25 C -0.034 4.034 26 H 0.072 0.928 27 C -0.201 4.201 28 H 0.053 0.947 29 H 0.076 0.924 30 H 0.110 0.890 31 H 0.131 0.869 32 H 0.090 0.910 33 H 0.010 0.990 34 H 0.035 0.965 35 H 0.073 0.927 36 H 0.159 0.841 37 H 0.154 0.846 38 H 0.061 0.939 39 H 0.139 0.861 40 H 0.171 0.829 41 H 0.196 0.804 42 H 0.103 0.897 43 H 0.124 0.876 44 H 0.070 0.930 45 H 0.065 0.935 46 H 0.086 0.914 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.765 -9.498 -19.874 22.200 hybrid contribution -0.349 0.843 2.144 2.330 sum -3.114 -8.655 -17.730 19.974 Atomic orbital electron populations 1.22169 0.95479 1.02888 1.01709 1.21789 0.95245 0.80984 1.04045 1.48406 1.63518 1.14997 1.06286 1.18679 0.95251 0.91397 0.80760 1.21647 0.97894 1.31115 1.05857 0.92469 1.25812 0.99498 0.97163 0.96821 1.70048 1.29599 1.42768 1.14765 0.85599 0.79893 0.78876 0.77252 1.18298 1.20838 1.20532 1.22642 0.77617 0.87098 0.87607 1.90661 1.48431 1.20100 1.87711 1.22662 1.06829 0.96337 0.83129 1.61880 1.04391 1.15608 1.41030 1.21989 0.89337 1.03685 0.93409 1.30003 1.14352 1.19357 1.06565 1.08592 0.80419 0.79245 0.73822 1.93561 1.81703 1.61762 1.61469 1.93525 1.86541 1.82923 1.34119 1.29882 1.19819 1.07850 1.06759 0.80141 1.21786 1.01502 0.94261 1.03376 1.21555 0.96833 0.91769 0.93207 0.92778 1.21987 0.93240 1.02969 1.01918 0.94677 0.92383 0.89025 0.86942 0.91049 0.98957 0.96485 0.92702 0.84142 0.84609 0.93943 0.86135 0.82905 0.80449 0.89665 0.87613 0.93019 0.93528 0.91376 0.88308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.00 10.24 71.98 0.74 -3.26 16 2 C 0.10 2.62 5.98 86.37 0.52 3.14 16 3 N -0.60 -22.89 2.46 -826.15 -2.03 -24.92 16 4 C 0.26 13.57 5.20 85.64 0.45 14.02 16 5 C -0.53 -29.30 8.92 25.60 0.23 -29.07 16 6 H 0.06 3.11 7.42 -2.91 -0.02 3.09 16 7 C 0.01 0.32 5.46 84.66 0.46 0.78 16 8 N -0.93 -56.55 13.29 21.45 0.28 -56.27 16 9 Si 0.96 44.78 29.54 68.60 2.03 46.81 16 10 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 11 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 12 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 13 C 0.46 16.68 6.25 87.66 0.55 17.23 16 14 O -0.59 -27.64 11.55 -3.03 -0.04 -27.68 16 15 C 0.04 0.89 3.79 85.56 0.32 1.21 16 16 N -0.51 -10.98 4.52 -877.02 -3.96 -14.94 16 17 C 0.04 1.03 4.83 86.44 0.42 1.44 16 18 C -0.57 -9.98 6.57 72.04 0.47 -9.50 16 19 S 2.39 60.96 4.74 -56.49 -0.27 60.69 16 20 O -0.99 -36.51 18.06 -127.41 -2.30 -38.81 16 21 O -0.97 -28.10 18.11 -127.41 -2.31 -30.41 16 22 C -0.53 -10.99 2.79 30.66 0.09 -10.90 16 23 H 0.18 2.27 8.14 -2.39 -0.02 2.25 16 24 C -0.15 -3.13 8.75 71.98 0.63 -2.50 16 25 C 0.08 1.97 1.37 45.06 0.06 2.03 16 26 H 0.05 2.02 5.75 -2.39 -0.01 2.01 16 27 C -0.14 -3.20 7.86 71.98 0.57 -2.64 16 28 H 0.03 1.14 7.26 -2.39 -0.02 1.13 16 29 H 0.06 1.29 7.22 -2.39 -0.02 1.27 16 30 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 31 H 0.11 1.81 6.44 -2.39 -0.02 1.79 16 32 H 0.07 1.91 7.89 -2.39 -0.02 1.89 16 33 H -0.01 -0.47 7.42 -2.38 -0.02 -0.49 16 34 H 0.02 0.92 7.89 -2.39 -0.02 0.90 16 35 H 0.26 15.21 8.31 -92.70 -0.77 14.44 16 36 H 0.14 2.01 7.20 -2.39 -0.02 2.00 16 37 H 0.14 2.36 5.28 -2.39 -0.01 2.35 16 38 H 0.04 1.40 6.17 -2.38 -0.01 1.39 16 39 H 0.12 2.11 7.83 -2.39 -0.02 2.09 16 40 H 0.15 2.19 8.14 -2.38 -0.02 2.17 16 41 H 0.18 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.11 1.74 6.43 -2.38 -0.02 1.73 16 44 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.05 1.23 5.68 -2.39 -0.01 1.22 16 46 H 0.07 1.51 6.38 -2.38 -0.02 1.49 16 47 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -86.37 369.15 -2.13 -88.50 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: 0.97 Total: 15.05 kcal Atomic # 6 Polarization: -23.53 SS G_CDS: 5.50 Total: -18.03 kcal Atomic # 7 Polarization: -90.42 SS G_CDS: -5.70 Total: -96.12 kcal Atomic # 8 Polarization: -92.25 SS G_CDS: -4.64 Total: -96.89 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Atomic # 16 Polarization: 60.96 SS G_CDS: -0.27 Total: 60.69 kcal Total: -86.37 -2.13 -88.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247225313.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.114 kcal (2) G-P(sol) polarization free energy of solvation -86.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds