Wall clock time and date at job start Tue Mar 31 2020 17:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46503 * 109.46989 * 2 1 4 4 C 1.46494 * 119.99912 * 84.99820 * 3 2 1 5 5 C 1.50703 * 109.47345 * 84.99979 * 4 3 2 6 6 H 1.08000 * 119.99548 * 0.02562 * 5 4 3 7 7 C 1.37875 * 120.00361 * 179.97438 * 5 4 3 8 8 N 1.31524 * 119.99768 * 0.02562 * 7 5 4 9 9 Si 1.86792 * 120.00053 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47297 * 90.00305 * 9 7 5 11 11 H 1.48497 * 109.47281 * 329.99957 * 9 7 5 12 12 H 1.48504 * 109.46927 * 209.99853 * 9 7 5 13 13 S 1.65600 * 119.99670 * 264.99790 * 3 2 1 14 14 O 1.42097 * 106.40396 * 23.54048 * 13 3 2 15 15 O 1.42106 * 106.40022 * 156.46015 * 13 3 2 16 16 N 1.65600 * 107.21864 * 269.99908 * 13 3 2 17 17 C 1.47422 * 125.64612 * 84.00907 * 16 13 3 18 18 C 1.54909 * 104.83198 * 204.09277 * 17 16 13 19 19 C 1.55156 * 101.58404 * 322.99539 * 18 17 16 20 20 C 1.47017 * 125.65013 * 263.70681 * 16 13 3 21 21 H 1.09005 * 109.88419 * 59.55670 * 20 16 13 22 22 C 1.53008 * 109.88338 * 298.39481 * 20 16 13 23 23 H 1.08992 * 110.33101 * 67.93489 * 22 20 16 24 24 C 1.54478 * 110.36847 * 305.68608 * 22 20 16 25 25 C 1.54502 * 104.06467 * 217.18920 * 24 22 20 26 26 C 1.54487 * 104.06257 * 0.02562 * 25 24 22 27 27 O 1.44419 * 110.37371 * 190.18893 * 22 20 16 28 28 H 1.08998 * 109.47225 * 300.00129 * 1 2 3 29 29 H 1.09003 * 109.46876 * 60.00074 * 1 2 3 30 30 H 1.09004 * 109.47010 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47225 * 239.99870 * 2 1 3 32 32 H 1.09003 * 109.46876 * 119.99926 * 2 1 3 33 33 H 1.09002 * 109.47328 * 324.99781 * 4 3 2 34 34 H 1.09001 * 109.47202 * 204.99712 * 4 3 2 35 35 H 0.97002 * 119.99718 * 359.97438 * 8 7 5 36 36 H 1.08993 * 110.37141 * 322.93325 * 17 16 13 37 37 H 1.09006 * 110.36628 * 85.25599 * 17 16 13 38 38 H 1.09002 * 111.00313 * 81.06721 * 18 17 16 39 39 H 1.09005 * 111.00845 * 204.91710 * 18 17 16 40 40 H 1.09000 * 110.72384 * 153.86342 * 19 18 17 41 41 H 1.09002 * 110.71914 * 276.96415 * 19 18 17 42 42 H 1.08998 * 110.50944 * 335.83772 * 24 22 20 43 43 H 1.09006 * 110.51013 * 98.54280 * 24 22 20 44 44 H 1.08999 * 110.51743 * 118.64437 * 25 24 22 45 45 H 1.09004 * 110.51124 * 241.22194 * 25 24 22 46 46 H 1.08997 * 110.37361 * 142.80990 * 26 25 24 47 47 H 1.09000 * 110.37281 * 265.04293 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1582 2.1087 1.2639 5 6 3.4947 1.7889 1.8824 6 1 4.1723 1.1118 1.3836 7 6 3.8528 2.3614 3.0844 8 7 3.0278 3.1864 3.6915 9 14 5.5091 1.9644 3.8513 10 1 6.5233 2.9366 3.3701 11 1 5.9175 0.5903 3.4637 12 1 5.4034 2.0508 5.3301 13 16 2.4122 2.1201 -1.4287 14 8 1.6869 1.4414 -2.4448 15 8 2.3057 3.5186 -1.1999 16 7 4.0144 1.8137 -1.7137 17 6 4.5571 0.5989 -2.3487 18 6 6.0165 0.5028 -1.8383 19 6 6.4329 1.9970 -1.8019 20 6 5.1308 2.7106 -1.3811 21 1 5.1454 2.9022 -0.3081 22 6 4.9856 4.0279 -2.1458 23 1 4.1231 4.5850 -1.7800 24 6 4.8484 3.7580 -3.6606 25 6 5.6337 4.9134 -4.3205 26 6 6.1531 5.7444 -3.1262 27 8 6.1868 4.8192 -2.0168 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.3616 1.8098 1.9452 34 1 2.0921 3.1803 1.0756 35 1 2.1675 3.3922 3.2934 36 1 3.9883 -0.2776 -2.0387 37 1 4.5406 0.6985 -3.4341 38 1 6.0537 0.0626 -0.8418 39 1 6.6381 -0.0592 -2.5354 40 1 7.2201 2.1603 -1.0659 41 1 6.7536 2.3321 -2.7883 42 1 5.2934 2.7971 -3.9191 43 1 3.8009 3.7879 -3.9606 44 1 6.4670 4.5239 -4.9053 45 1 4.9750 5.5132 -4.9486 46 1 7.1530 6.1248 -3.3349 47 1 5.4717 6.5678 -2.9120 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000341100314.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:47 Heat of formation + Delta-G solvation = -124.713260 kcal Electronic energy + Delta-G solvation = -29875.151355 eV Core-core repulsion = 25991.470989 eV Total energy + Delta-G solvation = -3883.680366 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.86269 -37.56658 -36.79112 -36.18401 -35.33528 -32.93891 -31.93008 -30.75434 -30.52442 -29.90977 -26.87735 -26.17337 -23.24290 -23.16186 -21.95495 -21.74604 -21.34310 -20.29925 -18.34010 -17.42618 -17.15139 -16.59933 -16.41476 -15.84123 -15.68357 -15.18917 -14.71595 -14.33290 -13.79398 -13.74232 -13.56544 -13.49754 -13.21581 -13.11363 -12.85907 -12.55614 -12.41976 -11.97445 -11.74510 -11.67925 -11.61627 -11.49148 -11.42050 -11.28972 -11.17006 -11.07541 -11.03395 -10.99631 -10.95549 -10.55536 -10.53156 -10.29865 -10.25184 -10.15107 -9.47113 -9.42599 -8.69464 -8.42542 -7.96839 -6.43120 -4.17367 1.11842 3.32668 3.40312 3.42455 3.57073 3.85739 4.18978 4.47800 4.55961 4.65410 4.72221 4.83097 5.01841 5.04791 5.13918 5.27229 5.29692 5.33522 5.41523 5.45668 5.58854 5.66901 5.70325 5.71179 5.73498 5.77503 5.82494 5.94305 5.97214 6.00317 6.06448 6.08392 6.17616 6.25891 6.28127 6.38760 6.50134 6.55149 6.60886 6.71175 7.00580 7.04427 7.23216 7.47902 7.96971 8.39287 8.74760 9.54152 10.94300 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.010283 B = 0.006525 C = 0.005033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2722.250469 B = 4290.400766 C = 5561.798514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.130 3.870 3 N -0.986 5.986 4 C 0.236 3.764 5 C -0.616 4.616 6 H 0.058 0.942 7 C 0.023 3.977 8 N -0.906 5.906 9 Si 1.067 2.933 10 H -0.285 1.285 11 H -0.289 1.289 12 H -0.284 1.284 13 S 2.796 3.204 14 O -0.994 6.994 15 O -0.974 6.974 16 N -1.005 6.005 17 C 0.126 3.874 18 C -0.131 4.131 19 C -0.114 4.114 20 C 0.161 3.839 21 H 0.099 0.901 22 C 0.051 3.949 23 H 0.096 0.904 24 C -0.152 4.152 25 C -0.154 4.154 26 C 0.045 3.955 27 O -0.364 6.364 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.080 0.920 33 H 0.027 0.973 34 H 0.039 0.961 35 H 0.270 0.730 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.074 0.926 42 H 0.081 0.919 43 H 0.069 0.931 44 H 0.072 0.928 45 H 0.073 0.927 46 H 0.089 0.911 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.118 -3.564 -14.030 15.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.003 3.997 3 N -0.827 5.827 4 C 0.113 3.887 5 C -0.655 4.655 6 H 0.076 0.924 7 C -0.182 4.182 8 N -0.542 5.542 9 Si 0.895 3.105 10 H -0.211 1.211 11 H -0.215 1.215 12 H -0.210 1.210 13 S 2.806 3.194 14 O -0.978 6.978 15 O -0.959 6.959 16 N -0.844 5.844 17 C 0.000 4.000 18 C -0.170 4.170 19 C -0.153 4.153 20 C 0.054 3.946 21 H 0.117 0.883 22 C -0.008 4.008 23 H 0.114 0.886 24 C -0.190 4.190 25 C -0.192 4.192 26 C -0.032 4.032 27 O -0.282 6.282 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.099 0.901 33 H 0.045 0.955 34 H 0.057 0.943 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.098 0.902 39 H 0.095 0.905 40 H 0.099 0.901 41 H 0.093 0.907 42 H 0.099 0.901 43 H 0.087 0.913 44 H 0.091 0.909 45 H 0.092 0.908 46 H 0.107 0.893 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.551 -2.734 -13.075 14.465 hybrid contribution -0.968 -0.509 -1.192 1.618 sum 4.583 -3.243 -14.267 15.332 Atomic orbital electron populations 1.22211 0.96846 1.01554 1.02303 1.21001 0.93681 0.82849 1.02167 1.57638 1.78270 1.22924 1.23861 1.19250 0.97785 0.91766 0.79885 1.22349 1.02539 1.31558 1.09083 0.92396 1.25749 1.04284 0.93762 0.94422 1.70763 1.09887 1.32731 1.40799 0.83574 0.74691 0.75830 0.76417 1.21135 1.21467 1.20982 1.01412 0.71820 0.73314 0.72822 1.93544 1.70106 1.76593 1.57552 1.93548 1.85546 1.30718 1.86056 1.59049 1.23640 1.27087 1.74597 1.21887 0.94852 0.86553 0.96676 1.22811 0.95040 0.96924 1.02228 1.22569 0.96407 0.94031 1.02297 1.21137 0.85838 0.87209 1.00367 0.88291 1.23728 0.89355 0.93137 0.94561 0.88599 1.23010 1.00840 0.99498 0.95604 1.22927 1.00234 0.97458 0.98532 1.23374 1.01483 0.92686 0.85675 1.89111 1.41838 1.49481 1.47742 0.92185 0.92662 0.92119 0.91949 0.90134 0.95485 0.94289 0.91975 0.91240 0.91909 0.90212 0.90544 0.90071 0.90726 0.90085 0.91259 0.90888 0.90798 0.89308 0.92361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.70 10.24 37.16 0.38 -2.32 16 2 C 0.13 2.28 6.06 -4.04 -0.02 2.25 16 3 N -0.99 -20.49 2.82 -115.66 -0.33 -20.82 16 4 C 0.24 5.79 4.75 -5.20 -0.02 5.77 16 5 C -0.62 -16.08 9.38 -34.44 -0.32 -16.41 16 6 H 0.06 1.48 7.81 -52.49 -0.41 1.07 16 7 C 0.02 0.64 5.46 -17.82 -0.10 0.54 16 8 N -0.91 -26.63 13.65 55.43 0.76 -25.87 16 9 Si 1.07 24.39 29.90 -169.99 -5.08 19.30 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 13 S 2.80 56.37 6.23 -107.50 -0.67 55.70 16 14 O -0.99 -20.34 16.78 -57.17 -0.96 -21.30 16 15 O -0.97 -22.30 14.05 -57.17 -0.80 -23.11 16 16 N -1.00 -17.19 2.94 -104.41 -0.31 -17.49 16 17 C 0.13 1.71 6.68 -2.53 -0.02 1.69 16 18 C -0.13 -1.57 7.09 -24.58 -0.17 -1.75 16 19 C -0.11 -1.54 5.61 -24.89 -0.14 -1.68 16 20 C 0.16 2.76 3.11 -66.95 -0.21 2.55 16 21 H 0.10 2.01 8.14 -51.93 -0.42 1.59 16 22 C 0.05 0.86 2.87 -25.95 -0.07 0.79 16 23 H 0.10 1.88 6.22 -51.93 -0.32 1.56 16 24 C -0.15 -2.09 5.76 -25.17 -0.14 -2.24 16 25 C -0.15 -1.71 7.09 -25.16 -0.18 -1.89 16 26 C 0.05 0.56 7.63 37.94 0.29 0.85 16 27 O -0.36 -5.90 10.81 -35.23 -0.38 -6.28 16 28 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.98 7.61 -51.93 -0.40 0.58 16 32 H 0.08 1.42 8.11 -51.93 -0.42 1.00 16 33 H 0.03 0.68 7.98 -51.93 -0.41 0.27 16 34 H 0.04 1.05 6.78 -51.93 -0.35 0.70 16 35 H 0.27 7.92 7.22 -40.82 -0.29 7.62 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.06 0.75 7.76 -51.93 -0.40 0.35 16 38 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.07 0.91 6.36 -51.93 -0.33 0.58 16 42 H 0.08 1.02 5.62 -51.93 -0.29 0.73 16 43 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 46 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 47 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 377.53 15.07 5.69 5.69 Total: -1.00 -31.77 377.53 -10.75 -42.52 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -7.93 Total: 3.51 kcal Atomic # 6 Polarization: -11.11 SS G_CDS: -0.74 Total: -11.85 kcal Atomic # 7 Polarization: -64.31 SS G_CDS: 0.12 Total: -64.18 kcal Atomic # 8 Polarization: -48.54 SS G_CDS: -2.14 Total: -50.68 kcal Atomic # 14 Polarization: 24.39 SS G_CDS: -5.08 Total: 19.30 kcal Atomic # 16 Polarization: 56.37 SS G_CDS: -0.67 Total: 55.70 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.77 -10.75 -42.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341100314.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.192 kcal (2) G-P(sol) polarization free energy of solvation -31.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds