Wall clock time and date at job start Tue Mar 31 2020 17:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46503 * 109.46989 * 2 1 4 4 C 1.46494 * 119.99912 * 84.99820 * 3 2 1 5 5 C 1.50703 * 109.47345 * 84.99979 * 4 3 2 6 6 H 1.08000 * 119.99548 * 0.02562 * 5 4 3 7 7 C 1.37875 * 120.00361 * 179.97438 * 5 4 3 8 8 N 1.31524 * 119.99768 * 0.02562 * 7 5 4 9 9 Si 1.86792 * 120.00053 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47297 * 90.00305 * 9 7 5 11 11 H 1.48497 * 109.47281 * 329.99957 * 9 7 5 12 12 H 1.48504 * 109.46927 * 209.99853 * 9 7 5 13 13 S 1.65600 * 119.99670 * 264.99790 * 3 2 1 14 14 O 1.42097 * 106.40396 * 23.54048 * 13 3 2 15 15 O 1.42106 * 106.40022 * 156.46015 * 13 3 2 16 16 N 1.65600 * 107.21864 * 269.99908 * 13 3 2 17 17 C 1.47422 * 125.64612 * 84.00907 * 16 13 3 18 18 C 1.54909 * 104.83198 * 204.09277 * 17 16 13 19 19 C 1.55156 * 101.58404 * 322.99539 * 18 17 16 20 20 C 1.47017 * 125.65013 * 263.70681 * 16 13 3 21 21 H 1.09005 * 109.88419 * 59.55670 * 20 16 13 22 22 C 1.53008 * 109.88338 * 298.39481 * 20 16 13 23 23 H 1.08992 * 110.33101 * 67.93489 * 22 20 16 24 24 C 1.54478 * 110.36847 * 305.68608 * 22 20 16 25 25 C 1.54502 * 104.06467 * 217.18920 * 24 22 20 26 26 C 1.54487 * 104.06257 * 0.02562 * 25 24 22 27 27 O 1.44419 * 110.37371 * 190.18893 * 22 20 16 28 28 H 1.08998 * 109.47225 * 300.00129 * 1 2 3 29 29 H 1.09003 * 109.46876 * 60.00074 * 1 2 3 30 30 H 1.09004 * 109.47010 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47225 * 239.99870 * 2 1 3 32 32 H 1.09003 * 109.46876 * 119.99926 * 2 1 3 33 33 H 1.09002 * 109.47328 * 324.99781 * 4 3 2 34 34 H 1.09001 * 109.47202 * 204.99712 * 4 3 2 35 35 H 0.97002 * 119.99718 * 359.97438 * 8 7 5 36 36 H 1.08993 * 110.37141 * 322.93325 * 17 16 13 37 37 H 1.09006 * 110.36628 * 85.25599 * 17 16 13 38 38 H 1.09002 * 111.00313 * 81.06721 * 18 17 16 39 39 H 1.09005 * 111.00845 * 204.91710 * 18 17 16 40 40 H 1.09000 * 110.72384 * 153.86342 * 19 18 17 41 41 H 1.09002 * 110.71914 * 276.96415 * 19 18 17 42 42 H 1.08998 * 110.50944 * 335.83772 * 24 22 20 43 43 H 1.09006 * 110.51013 * 98.54280 * 24 22 20 44 44 H 1.08999 * 110.51743 * 118.64437 * 25 24 22 45 45 H 1.09004 * 110.51124 * 241.22194 * 25 24 22 46 46 H 1.08997 * 110.37361 * 142.80990 * 26 25 24 47 47 H 1.09000 * 110.37281 * 265.04293 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1582 2.1087 1.2639 5 6 3.4947 1.7889 1.8824 6 1 4.1723 1.1118 1.3836 7 6 3.8528 2.3614 3.0844 8 7 3.0278 3.1864 3.6915 9 14 5.5091 1.9644 3.8513 10 1 6.5233 2.9366 3.3701 11 1 5.9175 0.5903 3.4637 12 1 5.4034 2.0508 5.3301 13 16 2.4122 2.1201 -1.4287 14 8 1.6869 1.4414 -2.4448 15 8 2.3057 3.5186 -1.1999 16 7 4.0144 1.8137 -1.7137 17 6 4.5571 0.5989 -2.3487 18 6 6.0165 0.5028 -1.8383 19 6 6.4329 1.9970 -1.8019 20 6 5.1308 2.7106 -1.3811 21 1 5.1454 2.9022 -0.3081 22 6 4.9856 4.0279 -2.1458 23 1 4.1231 4.5850 -1.7800 24 6 4.8484 3.7580 -3.6606 25 6 5.6337 4.9134 -4.3205 26 6 6.1531 5.7444 -3.1262 27 8 6.1868 4.8192 -2.0168 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.3616 1.8098 1.9452 34 1 2.0921 3.1803 1.0756 35 1 2.1675 3.3922 3.2934 36 1 3.9883 -0.2776 -2.0387 37 1 4.5406 0.6985 -3.4341 38 1 6.0537 0.0626 -0.8418 39 1 6.6381 -0.0592 -2.5354 40 1 7.2201 2.1603 -1.0659 41 1 6.7536 2.3321 -2.7883 42 1 5.2934 2.7971 -3.9191 43 1 3.8009 3.7879 -3.9606 44 1 6.4670 4.5239 -4.9053 45 1 4.9750 5.5132 -4.9486 46 1 7.1530 6.1248 -3.3349 47 1 5.4717 6.5678 -2.9120 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000341100314.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:46 Heat of formation + Delta-G solvation = -146.439580 kcal Electronic energy + Delta-G solvation = -29876.093479 eV Core-core repulsion = 25991.470989 eV Total energy + Delta-G solvation = -3884.622490 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.04209 -38.73896 -38.45671 -37.89156 -37.02950 -34.95096 -33.00858 -31.89961 -31.72609 -31.50925 -28.10723 -27.96786 -25.07130 -24.40995 -23.45477 -22.93714 -22.37561 -21.56041 -19.91509 -19.14531 -18.66612 -18.35705 -17.63802 -17.27357 -17.00818 -16.42974 -16.05114 -15.78113 -15.63973 -15.07031 -14.88401 -14.80347 -14.72021 -14.27523 -14.23016 -14.08498 -13.78849 -13.61181 -13.34516 -13.29471 -13.14127 -12.88716 -12.80787 -12.68851 -12.64298 -12.42194 -12.33622 -12.28499 -12.08807 -12.00991 -11.93508 -11.78992 -11.57085 -11.32102 -11.28285 -10.70373 -10.56389 -10.05677 -9.77690 -8.63203 -6.38218 -0.47574 1.53066 1.61558 1.76773 1.82960 2.36207 2.56864 2.92711 3.14468 3.18862 3.54781 3.58554 3.74818 3.81817 3.89479 4.01439 4.11906 4.22567 4.28713 4.32850 4.34203 4.36161 4.54137 4.55030 4.61860 4.68848 4.80329 4.83821 4.86877 4.89171 4.92868 4.93464 4.96519 5.03422 5.04825 5.11274 5.18279 5.21925 5.25378 5.32805 5.40021 5.52321 5.76495 5.85893 5.87205 6.25193 6.52053 7.41895 8.73258 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.010283 B = 0.006525 C = 0.005033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2722.250469 B = 4290.400766 C = 5561.798514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.119 3.881 3 N -0.993 5.993 4 C 0.250 3.750 5 C -0.608 4.608 6 H 0.065 0.935 7 C -0.030 4.030 8 N -0.937 5.937 9 Si 1.110 2.890 10 H -0.278 1.278 11 H -0.261 1.261 12 H -0.286 1.286 13 S 2.804 3.196 14 O -0.996 6.996 15 O -1.011 7.011 16 N -1.003 6.003 17 C 0.112 3.888 18 C -0.120 4.120 19 C -0.106 4.106 20 C 0.157 3.843 21 H 0.052 0.948 22 C 0.049 3.951 23 H 0.052 0.948 24 C -0.150 4.150 25 C -0.144 4.144 26 C 0.034 3.966 27 O -0.382 6.382 28 H 0.045 0.955 29 H 0.046 0.954 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.015 0.985 34 H 0.006 0.994 35 H 0.255 0.745 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.069 0.931 39 H 0.117 0.883 40 H 0.080 0.920 41 H 0.095 0.905 42 H 0.100 0.900 43 H 0.056 0.944 44 H 0.101 0.899 45 H 0.087 0.913 46 H 0.118 0.882 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.524 -5.795 -16.378 18.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.006 4.006 3 N -0.833 5.833 4 C 0.126 3.874 5 C -0.647 4.647 6 H 0.083 0.917 7 C -0.228 4.228 8 N -0.574 5.574 9 Si 0.932 3.068 10 H -0.204 1.204 11 H -0.185 1.185 12 H -0.212 1.212 13 S 2.815 3.185 14 O -0.980 6.980 15 O -0.996 6.996 16 N -0.844 5.844 17 C -0.012 4.012 18 C -0.158 4.158 19 C -0.145 4.145 20 C 0.050 3.950 21 H 0.071 0.929 22 C -0.011 4.011 23 H 0.070 0.930 24 C -0.187 4.187 25 C -0.182 4.182 26 C -0.043 4.043 27 O -0.301 6.301 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.114 0.886 31 H 0.106 0.894 32 H 0.098 0.902 33 H 0.033 0.967 34 H 0.024 0.976 35 H 0.064 0.936 36 H 0.096 0.904 37 H 0.105 0.895 38 H 0.088 0.912 39 H 0.135 0.865 40 H 0.099 0.901 41 H 0.114 0.886 42 H 0.118 0.882 43 H 0.075 0.925 44 H 0.119 0.881 45 H 0.105 0.895 46 H 0.136 0.864 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 7.929 -4.995 -15.457 18.076 hybrid contribution -1.750 0.217 -0.525 1.840 sum 6.179 -4.779 -15.981 17.788 Atomic orbital electron populations 1.22202 0.95673 1.03568 1.01227 1.21300 0.94818 0.81139 1.03315 1.57615 1.79150 1.24141 1.22419 1.18800 0.96955 0.90379 0.81271 1.22586 1.02864 1.30589 1.08651 0.91695 1.27188 1.06937 0.93188 0.95507 1.70891 1.10015 1.34879 1.41632 0.83042 0.71058 0.77230 0.75507 1.20376 1.18492 1.21166 1.00966 0.72581 0.72398 0.72575 1.93528 1.70838 1.76385 1.57219 1.93508 1.86462 1.33174 1.86426 1.58793 1.22473 1.28663 1.74512 1.22316 0.95857 0.85099 0.97935 1.22814 0.94310 0.95957 1.02743 1.22565 0.93985 0.94732 1.03211 1.21121 0.87748 0.88173 0.97928 0.92947 1.23533 0.88291 0.92536 0.96733 0.92985 1.23010 1.00858 1.01665 0.93206 1.22936 1.00964 0.96262 0.98014 1.23670 1.03188 0.92169 0.85231 1.89084 1.41121 1.50201 1.49710 0.93542 0.93450 0.88550 0.89449 0.90202 0.96699 0.97607 0.93551 0.90400 0.89499 0.91248 0.86500 0.90120 0.88625 0.88178 0.92488 0.88081 0.89469 0.86450 0.93119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.21 10.24 71.98 0.74 -4.48 16 2 C 0.12 4.11 6.06 86.38 0.52 4.63 16 3 N -0.99 -42.23 2.82 -519.83 -1.47 -43.70 16 4 C 0.25 12.93 4.75 85.64 0.41 13.34 16 5 C -0.61 -32.56 9.38 25.60 0.24 -32.32 16 6 H 0.06 3.32 7.81 -2.91 -0.02 3.30 16 7 C -0.03 -1.66 5.46 84.65 0.46 -1.19 16 8 N -0.94 -57.25 13.65 21.45 0.29 -56.96 16 9 Si 1.11 49.15 29.90 68.60 2.05 51.20 16 10 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 11 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 12 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 13 S 2.80 115.50 6.23 -56.49 -0.35 115.15 16 14 O -1.00 -40.23 16.78 -128.00 -2.15 -42.37 16 15 O -1.01 -49.32 14.05 -128.00 -1.80 -51.12 16 16 N -1.00 -33.84 2.94 -484.26 -1.42 -35.26 16 17 C 0.11 2.70 6.68 86.86 0.58 3.28 16 18 C -0.12 -2.43 7.09 31.99 0.23 -2.20 16 19 C -0.11 -2.61 5.61 31.78 0.18 -2.43 16 20 C 0.16 5.42 3.11 45.35 0.14 5.56 16 21 H 0.05 2.25 8.14 -2.38 -0.02 2.24 16 22 C 0.05 1.67 2.87 31.10 0.09 1.76 16 23 H 0.05 2.22 6.22 -2.39 -0.01 2.20 16 24 C -0.15 -3.90 5.76 31.61 0.18 -3.72 16 25 C -0.14 -2.83 7.09 31.61 0.22 -2.60 16 26 C 0.03 0.79 7.63 72.49 0.55 1.34 16 27 O -0.38 -12.36 10.81 -148.98 -1.61 -13.97 16 28 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.10 2.28 8.14 -2.38 -0.02 2.26 16 31 H 0.09 2.55 7.61 -2.39 -0.02 2.54 16 32 H 0.08 2.75 8.11 -2.39 -0.02 2.73 16 33 H 0.02 0.80 7.98 -2.39 -0.02 0.78 16 34 H 0.01 0.35 6.78 -2.39 -0.02 0.33 16 35 H 0.26 15.89 7.22 -92.71 -0.67 15.22 16 36 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.09 1.72 7.76 -2.38 -0.02 1.70 16 38 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.12 1.51 8.14 -2.38 -0.02 1.49 16 40 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.10 1.96 6.36 -2.39 -0.02 1.95 16 42 H 0.10 2.19 5.62 -2.39 -0.01 2.17 16 43 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 44 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 46 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 47 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -73.02 377.53 -0.87 -73.89 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: 1.04 Total: 22.19 kcal Atomic # 6 Polarization: -23.58 SS G_CDS: 4.54 Total: -19.04 kcal Atomic # 7 Polarization: -133.32 SS G_CDS: -2.60 Total: -135.92 kcal Atomic # 8 Polarization: -101.91 SS G_CDS: -5.56 Total: -107.47 kcal Atomic # 14 Polarization: 49.15 SS G_CDS: 2.05 Total: 51.20 kcal Atomic # 16 Polarization: 115.50 SS G_CDS: -0.35 Total: 115.15 kcal Total: -73.02 -0.87 -73.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341100314.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.548 kcal (2) G-P(sol) polarization free energy of solvation -73.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds