Wall clock time and date at job start Tue Mar 31 2020 17:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46503 * 109.47447 * 2 1 4 4 C 1.46498 * 119.99958 * 268.06139 * 3 2 1 5 5 C 1.50702 * 109.46961 * 95.41213 * 4 3 2 6 6 H 1.07999 * 120.00374 * 0.02562 * 5 4 3 7 7 C 1.37883 * 119.99893 * 179.97438 * 5 4 3 8 8 N 1.31523 * 119.99729 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00305 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46945 * 59.99721 * 9 7 5 11 11 H 1.48494 * 109.47244 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47006 * 300.00411 * 9 7 5 13 13 C 1.34780 * 120.00049 * 88.05383 * 3 2 1 14 14 O 1.21282 * 119.99846 * 4.65336 * 13 3 2 15 15 C 1.50703 * 119.99922 * 184.64953 * 13 3 2 16 16 H 1.08996 * 109.49982 * 45.58476 * 15 13 3 17 17 C 1.53038 * 109.49392 * 285.51894 * 15 13 3 18 18 C 1.53047 * 109.53726 * 178.71544 * 17 15 13 19 19 C 1.53194 * 109.33707 * 61.31726 * 18 17 15 20 20 N 1.46928 * 108.77749 * 305.38375 * 19 18 17 21 21 S 1.65599 * 120.63122 * 233.63144 * 20 19 18 22 22 O 1.42100 * 104.27747 * 26.04351 * 21 20 19 23 23 O 1.42094 * 104.27857 * 153.90326 * 21 20 19 24 24 C 1.81395 * 104.44778 * 269.97794 * 21 20 19 25 25 C 1.53003 * 109.47314 * 179.97438 * 24 21 20 26 26 C 1.46931 * 118.73889 * 53.60512 * 20 19 18 27 27 H 1.09009 * 109.46616 * 58.48427 * 1 2 3 28 28 H 1.08994 * 109.47274 * 298.49181 * 1 2 3 29 29 H 1.08998 * 109.47366 * 178.48211 * 1 2 3 30 30 H 1.09007 * 109.47007 * 119.99444 * 2 1 3 31 31 H 1.08995 * 109.48024 * 240.00055 * 2 1 3 32 32 H 1.09001 * 109.47129 * 215.40587 * 4 3 2 33 33 H 1.08998 * 109.47098 * 335.41333 * 4 3 2 34 34 H 0.96997 * 119.99640 * 179.97438 * 8 7 5 35 35 H 1.08999 * 109.46417 * 298.70438 * 17 15 13 36 36 H 1.08997 * 109.46643 * 58.66909 * 17 15 13 37 37 H 1.09000 * 109.47175 * 301.37019 * 18 17 15 38 38 H 1.09000 * 109.52620 * 181.30003 * 18 17 15 39 39 H 1.08999 * 109.58861 * 185.59119 * 19 18 17 40 40 H 1.09000 * 109.70045 * 65.23753 * 19 18 17 41 41 H 1.09007 * 109.47224 * 299.99811 * 24 21 20 42 42 H 1.09001 * 109.47886 * 59.99679 * 24 21 20 43 43 H 1.08998 * 109.46611 * 300.00194 * 25 24 21 44 44 H 1.09004 * 109.47185 * 59.99800 * 25 24 21 45 45 H 1.08993 * 109.47463 * 179.97438 * 25 24 21 46 46 H 1.08997 * 109.58352 * 186.60673 * 26 20 19 47 47 H 1.08997 * 109.58386 * 66.17949 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3030 2.0575 -1.2680 5 6 1.1044 2.8708 -1.6836 6 1 0.2192 2.8832 -1.0650 7 6 1.1381 3.6002 -2.8533 8 7 2.2166 3.5863 -3.6060 9 14 -0.3478 4.6078 -3.3690 10 1 -0.6467 5.6195 -2.3238 11 1 -0.0592 5.2933 -4.6542 12 1 -1.5192 3.7110 -3.5390 13 6 2.2057 2.0298 1.1666 14 8 2.0512 1.4444 2.2174 15 6 2.6071 3.4824 1.1651 16 1 1.9919 4.0291 0.4506 17 6 4.0804 3.6047 0.7693 18 6 4.4806 5.0815 0.7364 19 6 4.3024 5.6866 2.1324 20 7 2.9241 5.4448 2.5803 21 16 1.9706 6.6987 3.0909 22 8 2.4979 7.8354 2.4209 23 8 0.6440 6.2531 2.8445 24 6 2.2843 6.8088 4.8742 25 6 1.4510 7.9455 5.4694 26 6 2.4077 4.0693 2.5660 27 1 -0.3633 0.5373 -0.8762 28 1 -0.3633 0.4902 0.9031 29 1 -0.3634 -1.0273 -0.0272 30 1 1.8933 -0.5138 0.8901 31 1 1.8934 -0.5138 -0.8899 32 1 3.1631 2.7155 -1.1438 33 1 2.5216 1.3145 -2.0350 34 1 2.2402 4.0991 -4.4290 35 1 4.6970 3.0780 1.4977 36 1 4.2291 3.1657 -0.2172 37 1 3.8481 5.6136 0.0258 38 1 5.5236 5.1696 0.4321 39 1 4.4907 6.7595 2.0924 40 1 4.9998 5.2189 2.8274 41 1 2.0086 5.8678 5.3504 42 1 3.3425 7.0063 5.0455 43 1 1.7271 8.8862 4.9932 44 1 0.3926 7.7484 5.2982 45 1 1.6391 8.0114 6.5410 46 1 1.3459 4.0751 2.8120 47 1 2.9506 3.4676 3.2949 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343870445.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:29 Heat of formation + Delta-G solvation = -113.582769 kcal Electronic energy + Delta-G solvation = -28873.437161 eV Core-core repulsion = 24990.239450 eV Total energy + Delta-G solvation = -3883.197712 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.72138 -37.54972 -37.10143 -35.86869 -35.22564 -33.33871 -32.86161 -32.39362 -31.11508 -29.86767 -27.05272 -24.73130 -24.38195 -23.87149 -22.85103 -22.14015 -20.40923 -18.64777 -18.31718 -17.63972 -16.63414 -16.45440 -16.36550 -16.02831 -15.36302 -14.85463 -14.53076 -14.44729 -14.21854 -13.94260 -13.84531 -13.49334 -13.22032 -13.12985 -12.71840 -12.68706 -12.52784 -12.24006 -12.02964 -11.99721 -11.93387 -11.80347 -11.75753 -11.45187 -11.42178 -11.09984 -10.91081 -10.85604 -10.76243 -10.65622 -10.45699 -10.35416 -10.13450 -9.93625 -9.63551 -9.05555 -8.75831 -8.47086 -7.69521 -6.15854 -4.21784 0.21762 2.63553 3.29552 3.33577 3.35807 3.42774 3.86429 3.95503 4.09134 4.37138 4.39209 4.61496 4.74166 4.94409 5.12498 5.16835 5.21593 5.31307 5.36439 5.38265 5.44766 5.52874 5.59968 5.65633 5.74927 5.86447 5.93923 5.95825 6.00259 6.02404 6.11429 6.28144 6.37140 6.45438 6.46806 6.55664 6.66851 6.74807 6.82269 6.92554 7.27595 7.57865 7.79593 8.08750 8.34384 8.82185 9.02632 9.45742 10.90567 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011397 B = 0.004791 C = 0.004142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2456.261419 B = 5843.447338 C = 6758.268479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.118 3.882 3 N -0.594 5.594 4 C 0.227 3.773 5 C -0.536 4.536 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.891 5.891 9 Si 0.890 3.110 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.527 3.473 14 O -0.579 6.579 15 C -0.117 4.117 16 H 0.121 0.879 17 C -0.111 4.111 18 C -0.127 4.127 19 C 0.118 3.882 20 N -0.997 5.997 21 S 2.604 3.396 22 O -0.954 6.954 23 O -0.947 6.947 24 C -0.636 4.636 25 C -0.147 4.147 26 C 0.139 3.861 27 H 0.069 0.931 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.050 0.950 33 H 0.035 0.965 34 H 0.265 0.735 35 H 0.059 0.941 36 H 0.089 0.911 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.090 0.910 40 H 0.066 0.934 41 H 0.131 0.869 42 H 0.129 0.871 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.079 0.921 46 H 0.093 0.907 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.904 3.833 13.912 15.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.005 4.005 3 N -0.324 5.324 4 C 0.108 3.892 5 C -0.575 4.575 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.529 5.529 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.201 1.201 13 C 0.315 3.685 14 O -0.461 6.461 15 C -0.140 4.140 16 H 0.139 0.861 17 C -0.148 4.148 18 C -0.166 4.166 19 C -0.008 4.008 20 N -0.835 5.835 21 S 2.697 3.303 22 O -0.945 6.945 23 O -0.937 6.937 24 C -0.765 4.765 25 C -0.205 4.205 26 C 0.014 3.986 27 H 0.088 0.912 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.068 0.932 33 H 0.053 0.947 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.107 0.893 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.109 0.891 40 H 0.084 0.916 41 H 0.150 0.850 42 H 0.148 0.852 43 H 0.090 0.910 44 H 0.091 0.909 45 H 0.098 0.902 46 H 0.112 0.888 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.345 4.119 13.721 14.970 hybrid contribution -0.524 0.290 0.003 0.599 sum 3.821 4.408 13.724 14.912 Atomic orbital electron populations 1.22107 0.96461 1.00754 1.02899 1.21226 0.94378 0.83521 1.01415 1.48254 1.62991 1.13190 1.07956 1.19721 0.97333 0.92974 0.79189 1.21460 1.00614 1.28431 1.06957 0.92039 1.24899 0.96139 0.96382 0.96130 1.69901 1.27537 1.41395 1.14051 0.86668 0.82997 0.80576 0.78040 1.19801 1.21141 1.20127 1.20245 0.76589 0.88346 0.83336 1.90568 1.54833 1.69093 1.31639 1.21561 0.99432 0.94137 0.98875 0.86148 1.21592 0.93640 0.96577 1.03022 1.21816 1.02030 0.96368 0.96417 1.21505 0.81343 1.01462 0.96445 1.57659 1.25511 1.21188 1.79169 1.05240 0.74205 0.73526 0.77297 1.93578 1.79930 1.50147 1.70799 1.93618 1.35730 1.80644 1.83713 1.30614 1.10075 1.08159 1.27645 1.21498 0.99693 0.96201 1.03143 1.21254 1.00199 0.80051 0.97135 0.91224 0.93030 0.93059 0.91429 0.91255 0.93236 0.94706 0.92521 0.92248 0.89282 0.90448 0.90661 0.89143 0.91608 0.85024 0.85245 0.91043 0.90937 0.90206 0.88847 0.90555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 10.23 37.16 0.38 -2.52 16 2 C 0.12 2.16 6.19 -4.04 -0.02 2.14 16 3 N -0.59 -12.31 2.47 -175.06 -0.43 -12.74 16 4 C 0.23 5.22 4.91 -5.19 -0.03 5.20 16 5 C -0.54 -13.72 8.11 -34.44 -0.28 -14.00 16 6 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 7 C 0.07 1.78 5.46 -17.81 -0.10 1.68 16 8 N -0.89 -24.15 13.29 55.43 0.74 -23.41 16 9 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 10 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 13 C 0.53 10.78 6.86 -10.98 -0.08 10.71 16 14 O -0.58 -12.52 15.47 5.56 0.09 -12.44 16 15 C -0.12 -2.17 1.90 -91.65 -0.17 -2.34 16 16 H 0.12 2.58 6.77 -51.93 -0.35 2.23 16 17 C -0.11 -1.77 4.91 -26.69 -0.13 -1.90 16 18 C -0.13 -1.78 6.08 -26.61 -0.16 -1.95 16 19 C 0.12 1.41 6.43 -3.71 -0.02 1.39 16 20 N -1.00 -13.77 3.22 -113.52 -0.37 -14.14 16 21 S 2.60 35.71 5.45 -107.50 -0.59 35.13 16 22 O -0.95 -15.30 16.59 -57.54 -0.95 -16.26 16 23 O -0.95 -16.66 16.59 -57.54 -0.95 -17.61 16 24 C -0.64 -5.63 6.90 37.16 0.26 -5.38 16 25 C -0.15 -1.21 9.92 37.16 0.37 -0.84 16 26 C 0.14 2.20 5.22 -3.71 -0.02 2.18 16 27 H 0.07 1.35 8.02 -51.92 -0.42 0.94 16 28 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 1.20 7.42 -51.93 -0.39 0.82 16 31 H 0.07 1.18 7.83 -51.93 -0.41 0.77 16 32 H 0.05 1.15 4.32 -51.93 -0.22 0.92 16 33 H 0.03 0.85 7.81 -51.93 -0.41 0.44 16 34 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.09 1.58 5.27 -51.93 -0.27 1.30 16 37 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.09 1.00 6.86 -51.93 -0.36 0.65 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.13 1.01 8.14 -51.92 -0.42 0.58 16 42 H 0.13 0.87 8.14 -51.92 -0.42 0.45 16 43 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.09 1.56 6.86 -51.93 -0.36 1.21 16 47 H 0.08 1.11 7.76 -51.93 -0.40 0.71 16 LS Contribution 381.65 15.07 5.75 5.75 Total: -1.00 -32.31 381.65 -9.52 -41.83 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -7.77 Total: 3.49 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: -0.01 Total: -5.62 kcal Atomic # 7 Polarization: -50.22 SS G_CDS: -0.06 Total: -50.28 kcal Atomic # 8 Polarization: -44.48 SS G_CDS: -1.82 Total: -46.31 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: 35.71 SS G_CDS: -0.59 Total: 35.13 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.31 -9.52 -41.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343870445.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.749 kcal (2) G-P(sol) polarization free energy of solvation -32.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds